FFCP PHASE1:Hg19::chr4:55096175..55096225,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5156 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8803 | |||
|TSSclassifier=strong | |||
|UniProt=D6RG11 | |||
|association_with_transcript=-263bp_to_ENST00000504461_5end | |||
|cluster_id=chr4:55096175..55096225,+ | |||
|description=CAGE_peak_8_at_PDGFRA_5end | |||
|id=chr4:55096175..55096225,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.36e-26!180;CL:0000057!1.88e-20!75;CL:0002620!1.08e-09!23;CL:0000680!7.87e-09!57;CL:0000056!7.87e-09!57;CL:0000355!7.87e-09!57;CL:0000187!2.32e-08!54;CL:0002334!1.50e-07!12;CL:0000192!1.62e-07!42;CL:0000514!1.62e-07!42;CL:0000183!2.14e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;7.23e-11;23!CL:1000306;3.33e-08;4!CL:0002547;3.33e-08;4!CL:0002334;9.25e-08;12!CL:0002615;1.65e-07;3!CL:0002579;2.14e-07;3!CL:0002580;3.30e-07;3!CL:0000136;5.37e-07;13!CL:0000057;5.80e-07;73!CL:0000135;7.52e-07;3!CL:0000388;7.52e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.18e-20,76;CL:0000048,1.06e-11,427;CL:0000723,2.98e-11,433;CL:0000034,1.13e-10,441;CL:0002620,1.23e-10,23;CL:0000136,1.61e-09,15;CL:0002320,7.10e-09,361;CL:1000306,1.94e-08,4;CL:0002547,1.94e-08,4;CL:0002334,9.18e-08,12;CL:0002615,2.07e-07,3;CL:0002579,2.16e-07,3;CL:0000134,2.64e-07,354;CL:0002580,3.68e-07,3;CL:0000135,9.78e-07,3;CL:0000388,9.78e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.54e-11!365;UBERON:0000914!1.23e-09!83;UBERON:0002329!1.23e-09!83;UBERON:0003077!1.23e-09!83;UBERON:0003059!1.23e-09!83;UBERON:0007282!1.23e-09!83;UBERON:0009618!1.23e-09!83;UBERON:0007285!1.23e-09!83;UBERON:0003102!7.63e-09!95;UBERON:0004457!1.31e-07!12;UBERON:0000042!1.31e-07!12;UBERON:0001134!1.44e-07!61;UBERON:0002036!1.44e-07!61;UBERON:0003082!1.44e-07!61;UBERON:0002385!1.89e-07!63;UBERON:0001015!1.89e-07!63;UBERON:0000383!1.89e-07!63;UBERON:0004290!2.80e-07!70;UBERON:0003688!2.98e-07!6;UBERON:0002358!2.98e-07!6;UBERON:0003684!2.98e-07!6;UBERON:0001178!2.98e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;3.04e-13;6!UBERON:0002358;3.04e-13;6!UBERON:0003684;3.04e-13;6!UBERON:0001178;3.04e-13;6!UBERON:0004457;1.76e-08;9!UBERON:0000042;1.76e-08;9!UBERON:0004797;3.33e-08;4!UBERON:0000415;3.33e-08;4!UBERON:0007240;3.33e-08;4!UBERON:0005742;3.33e-08;4!UBERON:0005734;3.33e-08;4!UBERON:0004664;3.33e-08;4!UBERON:0004663;3.33e-08;4!UBERON:0002384;3.69e-07;198!UBERON:0007846;7.52e-07;3!UBERON:0000043;7.52e-07;3!UBERON:0007845;7.52e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.83e-13,6;UBERON:0002358,3.83e-13,6;UBERON:0003684,3.83e-13,6;UBERON:0001178,3.83e-13,6;UBERON:0002384,1.07e-08,371;UBERON:0000415,1.94e-08,4;UBERON:0007240,1.94e-08,4;UBERON:0005742,1.94e-08,4;UBERON:0005734,1.94e-08,4;UBERON:0004664,1.94e-08,4;UBERON:0004663,1.94e-08,4;UBERON:0003102,2.99e-07,99;UBERON:0007846,9.78e-07,3;UBERON:0000043,9.78e-07,3;UBERON:0007845,9.78e-07,3 | |||
|phase1_expression=2.54349730978779,1.49870366723688,6.06103937612676,3.00219895059391,7.59833860526389,7.85104671690332,2.53299878168311,0,0.261185628199839,0,0,0,0,1.48519623552056,3.97676850873499,0,0,0,0,0,0.612002073732759,0,1.14494394852423,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,1.02290049474824,0.361439152384566,5.51471701699479,1.30361867064741,0.795285947051099,3.89307896242109,0.0945348171640679,0.221729397462564,0.614843499851882,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.8994576749687,3.70745706277013,8.03142538096678,1.41867352879343,0.560677600142307,0,0,0.622422070799533,0.134710672069688,0.163461903113459,0.302714855289863,0,0,0,0,0.298897361103602,0.117434498643765,0.161872944368132,0,0.408308342509787,0,0.206651562351531,5.94001428641027,2.71993622206413,0,0,0.168336113954066,0.125118519871964,0.277064115484183,1.31693286264251,2.75839016219118,1.65261864797256,0.226864366320042,0.89694817844431,1.06778694409284,1.05965950579781,2.70081986475962,2.37020817248409,0.515281080091258,1.30281799432113,2.70042131586026,3.11798416515836,1.51460264546469,3.40584624976508,3.07127507955743,2.13005755509969,1.5112814734146,1.18692414617341,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,3.71494342425583,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,2.94017422771084,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0.775630294546667,0,0,12.233153362904,5.2003718455683,0.257207374262142,0,0,6.14805372730035,0,0,0,6.39705507736582,0,1.50719688529793,0,0.499864955910285,0,0,0,0.958499421966331,5.7430967917057,0,1.01346914667305,0.61642896765115,0,0,0,0,0,1.27047312111232,0,0,0,0,0,0,0,2.57652132610194,0.500170521059677,3.25518028439683,0.623912584592421,1.24900292158013,0.788512075169673,0.937131319941706,1.80567659836631,0,3.10419213877515,1.32845119707087,0.553107505625109,0,0,0.343143423810856,0,0,0,0,0,0,3.47350930946288,4.910783145218,3.08726103876381,6.53509661204075,3.58195074346692,4.02134802859019,1.48418066444991,0.154209693802656,0.177561725313127,0.410635780069046,0,0.348631135379878,0,0,0,1.60740227430449,0.910455840033585,1.18011973463482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.915694648183434,1.32015199872941,0,0,1.6068392984416,0.193341436584244,0,0.15350367472613,0,0,0.145016693914229,0,3.11612124763581,0,0,0,0,0,8.81474571125792,0.6970372701606,0.308033580176089,0.532306030317022,1.73986598415015,0.55597265731176,0.572499546967965,4.46590043231601,1.58189712359363,1.14378116354295,0,3.85145089230528,0.95460974377781,0.78494864019923,0.899362287916574,0.823611089208164,0.353437207037059,0.202182481573316,1.58510321173008,0,0,0.487426979262569,0,5.59649636772742,1.1312434556297,1.13008116620243,2.2054613741845,0,0.438450885253763,0,3.9353685122798,0,0,0,0.143411352204052,1.3754865741837,0,0.354761064070598,0.633322905892992,0.987884678879706,0,0.349934720244983,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.19924798825107,0.276283915531148,0,0,0,0.622079175323615,0,0,0,0,0,2.22273980289274,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0.173624994933292,0.885741385813839,0,0,0,0.295547618953547,0.438770794307945,0,0,0.923403102045565,1.13942055847001,0,0,0,0,2.01514705484097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.265372693510018,0,0,0,0,0.471807930864739,0,0.468528891450678,0,0,0,0,0,1.22429104652196,1.45329133145522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0.176512253383001,0.451961481561065,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0.343189995723929,0,0.124252535565433,0,0,0,0.203996435272644,0,0,0.136905378891993,0,1.71906176567983,0,0.279282401272254,0.229160424011684,0.717873024576814,0,0,0,0,2.16179930125442,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0.157611414598396,0.944182586429966,0,0,0,0,0,1.27134268827375,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0.106787412567695,1.57204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0.298509605773748,1.40227985908335,0.554805861502613,1.32582103692562,1.25783950876288,0,0.457680136793847,0.756154618816195,0.310874401165561,0.591420599958536,0.159296767163702,0,0.465788870628778,0.414706207840855,0.265841714557995,0.521745061811734,1.20206087197775,0,0.406870733204662,0.363697318405119,0.429642228169954,0.464033759878494,2.78667122089031,0,2.40376993627955,1.6837474438296,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0.920529751259204,0,0,0,0,0,0.109209638192014,0,0.212574920101683,0,0,0.9540130519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| |||
|short_description=p8@PDGFRA | |||
}} |
Latest revision as of 00:49, 18 September 2015
Short description: | p8@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PDGFRA_5end |
Coexpression cluster: | NA |
Association with transcript: | -263bp_to_ENST00000504461_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | D6RG11 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.18e-20 | 76 |
multi fate stem cell | 1.06e-11 | 427 |
somatic stem cell | 2.98e-11 | 433 |
stem cell | 1.13e-10 | 441 |
skin fibroblast | 1.23e-10 | 23 |
fat cell | 1.61e-09 | 15 |
connective tissue cell | 7.10e-09 | 361 |
fibroblast of tunica adventitia of artery | 1.94e-08 | 4 |
fibroblast of the aortic adventitia | 1.94e-08 | 4 |
preadipocyte | 9.18e-08 | 12 |
adipocyte of omentum tissue | 2.07e-07 | 3 |
omentum preadipocyte | 2.16e-07 | 3 |
mesenchymal cell | 2.64e-07 | 354 |
preadipocyte of the breast | 3.68e-07 | 3 |
fibrocyte | 9.78e-07 | 3 |
tendon cell | 9.78e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 3.83e-13 | 6 |
peritoneum | 3.83e-13 | 6 |
abdominal cavity | 3.83e-13 | 6 |
visceral peritoneum | 3.83e-13 | 6 |
connective tissue | 1.07e-08 | 371 |
artery wall | 1.94e-08 | 4 |
tunica adventitia of artery | 1.94e-08 | 4 |
adventitia | 1.94e-08 | 4 |
tunica adventitia of blood vessel | 1.94e-08 | 4 |
aorta tunica adventitia | 1.94e-08 | 4 |
aorta wall | 1.94e-08 | 4 |
surface structure | 2.99e-07 | 99 |
dense regular connective tissue | 9.78e-07 | 3 |
tendon | 9.78e-07 | 3 |
regular connective tissue | 9.78e-07 | 3 |