FFCP PHASE1:Hg19::chr6:31783311..31783328,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:31783311..31783328,+
|short_description=p1@HSPA1A,p1@HSPA1B
|description=CAGE_peak_1_at_HSPA1A_5end,CAGE_peak_1_at_HSPA1B_5end
|association_with_transcript...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3303,3304 | |EntrezGene=3303,3304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5232,5233 | |HGNC=5232,5233 | ||
|TSSclassifier=strong | |||
|UniProt=Q5SP16,E7EP11,E7EP94,F5H1D3 | |UniProt=Q5SP16,E7EP11,E7EP94,F5H1D3 | ||
|association_with_transcript=0bp_to_ENST00000375652,ENST00000435626,ENST00000458062,ENST00000541556,uc003nxi.1,uc011doj.1_5end | |||
|cluster_id=chr6:31783311..31783328,+ | |||
|coexpression_cluster_id=C411 | |||
|description=CAGE_peak_1_at_HSPA1A_5end,CAGE_peak_1_at_HSPA1B_5end | |||
|id=chr6:31783311..31783328,+ | |||
|ontology_enrichment_celltype=CL:0000557!1.27e-10!71;CL:0000860!5.19e-10!45;CL:0000839!5.57e-10!70;CL:0000766!6.57e-10!76;CL:0002009!7.55e-10!65;CL:0002057!1.02e-09!42;CL:0002194!5.83e-09!63;CL:0000576!5.83e-09!63;CL:0000040!5.83e-09!63;CL:0000559!5.83e-09!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.73e-13;33!CL:0002057;5.73e-13;33!CL:0000473;1.10e-11;39!CL:0000234;1.10e-11;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,9.18e-11,48;CL:0000234,9.18e-11,48;CL:0000557,1.71e-10,67;CL:0000839,7.64e-10,66;CL:0000766,9.40e-10,72;CL:0002009,1.00e-09,61;CL:0000860,1.01e-09,42;CL:0002057,1.01e-09,42;CL:0002194,7.95e-09,59;CL:0000576,7.95e-09,59;CL:0000040,7.95e-09,59;CL:0000559,7.95e-09,59 | |||
|ontology_enrichment_development_v019=CL:0002057;1.60e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.28e-37!115;UBERON:0000062!1.29e-24!511;UBERON:0000468!5.06e-18!659;UBERON:0001049!2.84e-17!57;UBERON:0005068!2.84e-17!57;UBERON:0006241!2.84e-17!57;UBERON:0007135!2.84e-17!57;UBERON:0000467!1.38e-16!625;UBERON:0000480!3.53e-16!626;UBERON:0002616!4.24e-13!59;UBERON:0003080!1.40e-12!42;UBERON:0002050!2.59e-12!605;UBERON:0005423!2.59e-12!605;UBERON:0000922!3.53e-12!612;UBERON:0000923!5.36e-12!604;UBERON:0005291!5.36e-12!604;UBERON:0006598!5.36e-12!604;UBERON:0002532!5.36e-12!604;UBERON:0002780!5.50e-12!41;UBERON:0001890!5.50e-12!41;UBERON:0006240!5.50e-12!41;UBERON:0000064!1.21e-10!219;UBERON:0003075!1.26e-10!86;UBERON:0007284!1.26e-10!86;UBERON:0002346!2.00e-10!90;UBERON:0000955!5.79e-10!69;UBERON:0006238!5.79e-10!69;UBERON:0002020!9.03e-10!34;UBERON:0003528!9.03e-10!34;UBERON:0001893!2.01e-09!34;UBERON:0002791!2.43e-09!33;UBERON:0001017!2.73e-09!82;UBERON:0004111!1.05e-08!241;UBERON:0005743!1.36e-08!86;UBERON:0002371!1.54e-08!80;UBERON:0001869!1.95e-08!32;UBERON:0000477!2.19e-08!286;UBERON:0002405!5.00e-08!115;UBERON:0001474!1.01e-07!86;UBERON:0000025!1.37e-07!194;UBERON:0002619!3.29e-07!22;UBERON:0000153!3.62e-07!129;UBERON:0007811!3.62e-07!129;UBERON:0002390!3.87e-07!102;UBERON:0003061!3.87e-07!102;UBERON:0004765!4.71e-07!101;UBERON:0001434!4.71e-07!101;UBERON:0000073!6.39e-07!94;UBERON:0001016!6.39e-07!94;UBERON:0000033!7.18e-07!123;UBERON:0002193!8.94e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;6.69e-10;114!UBERON:0002780;3.65e-09;41!UBERON:0001890;3.65e-09;41!UBERON:0000073;4.64e-09;53!UBERON:0002616;4.64e-09;53!UBERON:0003528;3.21e-08;34!UBERON:0002020;3.21e-08;34!UBERON:0002791;3.92e-08;32!UBERON:0001893;5.17e-08;34!UBERON:0001869;9.45e-08;32!UBERON:0002619;3.37e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.12e-36,114;UBERON:0001049,1.16e-16,56;UBERON:0005068,1.16e-16,56;UBERON:0006241,1.16e-16,56;UBERON:0007135,1.16e-16,56;UBERON:0000073,2.58e-15,53;UBERON:0002616,2.58e-15,53;UBERON:0002780,5.47e-12,41;UBERON:0001890,5.47e-12,41;UBERON:0003080,5.47e-12,41;UBERON:0006240,5.47e-12,41;UBERON:0000922,1.17e-11,592;UBERON:0005423,1.45e-11,581;UBERON:0011216,8.27e-11,223;UBERON:0003075,2.15e-10,82;UBERON:0007284,2.15e-10,82;UBERON:0002050,2.42e-10,564;UBERON:0002346,3.48e-10,86;UBERON:0000923,7.95e-10,560;UBERON:0010316,7.95e-10,560;UBERON:0005291,7.95e-10,560;UBERON:0006598,7.95e-10,560;UBERON:0010317,7.95e-10,560;UBERON:0002532,7.95e-10,560;UBERON:0003528,9.00e-10,34;UBERON:0002020,9.00e-10,34;UBERON:0000955,1.57e-09,68;UBERON:0006238,1.57e-09,68;UBERON:0001893,2.00e-09,34;UBERON:0002791,6.79e-09,32;UBERON:0001017,6.84e-09,81;UBERON:0004111,1.40e-08,240;UBERON:0001869,1.95e-08,32;UBERON:0002371,2.27e-08,76;UBERON:0010371,1.28e-07,104;UBERON:0001474,1.54e-07,82;UBERON:0000025,1.90e-07,192;UBERON:0002405,1.98e-07,93;UBERON:0002619,3.28e-07,22;UBERON:0001016,3.95e-07,89;UBERON:0004765,5.34e-07,90;UBERON:0002390,6.00e-07,98;UBERON:0003061,6.00e-07,98 | |||
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| ||
|short_description=p1@HSPA1A,p1@HSPA1B | |||
}} | }} |
Latest revision as of 00:14, 18 September 2015
Short description: | p1@HSPA1A, p1@HSPA1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HSPA1A_5end, CAGE_peak_1_at_HSPA1B_5end |
Coexpression cluster: | C411_vagina_Mast_breast_heart_CD14_aorta_liver |
Association with transcript: | 0bp_to_ENST00000375652, ENST00000435626, ENST00000458062, ENST00000541556, uc003nxi.1, uc011doj.1_5end |
EntrezGene: | 3303,3304 |
HGNC: | 5233&submit=Submit 5232, 5233 |
UniProt: | Q5SP16E7EP11E7EP94F5H1D3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 9.18e-11 | 48 |
phagocyte | 9.18e-11 | 48 |
granulocyte monocyte progenitor cell | 1.71e-10 | 67 |
myeloid lineage restricted progenitor cell | 7.64e-10 | 66 |
myeloid leukocyte | 9.40e-10 | 72 |
macrophage dendritic cell progenitor | 1.00e-09 | 61 |
classical monocyte | 1.01e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.01e-09 | 42 |
monopoietic cell | 7.95e-09 | 59 |
monocyte | 7.95e-09 | 59 |
monoblast | 7.95e-09 | 59 |
promonocyte | 7.95e-09 | 59 |