FFCP PHASE1:Hg19::chr19:39971470..39971498,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=92609 | |EntrezGene=92609 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23656 | |HGNC=23656 | ||
|TSSclassifier=strong | |||
|UniProt=Q330K1 | |UniProt=Q330K1 | ||
|association_with_transcript=-19bp_to_ENST00000544017_5end | |association_with_transcript=-19bp_to_ENST00000544017_5end | ||
|cluster_id=chr19:39971470..39971498,+ | |||
|coexpression_cluster_id=C2487 | |coexpression_cluster_id=C2487 | ||
|description=CAGE_peak_1_at_TIMM50_5end | |description=CAGE_peak_1_at_TIMM50_5end | ||
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|ontology_enrichment_celltype=CL:0000066!2.61e-27!254;CL:0002321!1.16e-25!248;CL:0000220!6.57e-25!246;CL:0000548!3.91e-19!679;CL:0000004!3.91e-19!679;CL:0000255!3.91e-19!679;CL:0000012!1.83e-18!682;CL:0000222!1.76e-12!119;CL:0000144!3.04e-11!625;CL:0000055!4.49e-09!180;CL:0000183!5.00e-08!59;CL:0000221!5.78e-08!71;CL:0000003!6.22e-08!722;CL:1000449!7.73e-08!16;CL:0000393!2.48e-07!60;CL:0000211!2.48e-07!60;CL:1000497!3.47e-07!18;CL:0002518!3.47e-07!18 | |ontology_enrichment_celltype=CL:0000066!2.61e-27!254;CL:0002321!1.16e-25!248;CL:0000220!6.57e-25!246;CL:0000548!3.91e-19!679;CL:0000004!3.91e-19!679;CL:0000255!3.91e-19!679;CL:0000012!1.83e-18!682;CL:0000222!1.76e-12!119;CL:0000144!3.04e-11!625;CL:0000055!4.49e-09!180;CL:0000183!5.00e-08!59;CL:0000221!5.78e-08!71;CL:0000003!6.22e-08!722;CL:1000449!7.73e-08!16;CL:0000393!2.48e-07!60;CL:0000211!2.48e-07!60;CL:1000497!3.47e-07!18;CL:0002518!3.47e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:1000449;6.91e-09;15!CL:1000497;4.39e-08;17!CL:0002518;4.39e-08;17!CL:0002681;2.37e-07;12!CL:0002584;2.37e-07;12 | |ontology_enrichment_celltype_v019=CL:1000449;6.91e-09;15!CL:1000497;4.39e-08;17!CL:0002518;4.39e-08;17!CL:0002681;2.37e-07;12!CL:0002584;2.37e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.01e-27,253;CL:0002321,1.38e-25,250;CL:0000222,2.30e-12,121;CL:1000449,6.87e-09,15;CL:1000497,4.43e-08,17;CL:0002518,4.43e-08,17;CL:0000221,1.17e-07,72;CL:0002681,2.37e-07,12;CL:0002584,2.37e-07,12;CL:0000393,5.97e-07,61;CL:0000211,5.97e-07,61;CL:0000213,8.36e-07,58;CL:0000215,8.36e-07,58 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!5.28e-15!235;DOID:14566!1.43e-14!239;DOID:0050686!6.22e-08!137;DOID:0050687!1.12e-07!143;DOID:8692!3.24e-07!31;DOID:1240!8.24e-07!39 | |ontology_enrichment_disease=DOID:162!5.28e-15!235;DOID:14566!1.43e-14!239;DOID:0050686!6.22e-08!137;DOID:0050687!1.12e-07!143;DOID:8692!3.24e-07!31;DOID:1240!8.24e-07!39 | ||
|ontology_enrichment_disease_v019=DOID:8692;4.20e-07;31 | |ontology_enrichment_disease_v019=DOID:8692;4.20e-07;31 | ||
|ontology_enrichment_disease_v019_2=DOID:162,5.28e-15,235;DOID:14566,1.43e-14,239;DOID:0050686,6.22e-08,137;DOID:0050687,1.12e-07,143;DOID:8692,3.24e-07,31;DOID:1240,8.24e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0003104!8.32e-12!238;UBERON:0009142!8.32e-12!238;UBERON:0002100!1.26e-11!216;UBERON:0000119!6.97e-11!312;UBERON:0000483!2.58e-10!309;UBERON:0005256!1.26e-09!143;UBERON:0000490!1.54e-09!138;UBERON:0003914!1.63e-09!118;UBERON:0004211!7.73e-08!16;UBERON:0001285!7.73e-08!16;UBERON:0007684!7.73e-08!16;UBERON:0003220!7.73e-08!16;UBERON:0004208!7.73e-08!16;UBERON:0009569!9.67e-08!113;UBERON:0000486!1.30e-07!82;UBERON:0004290!1.99e-07!70;UBERON:0000481!2.22e-07!347;UBERON:0005177!7.52e-07!107;UBERON:0002113!7.66e-07!27;UBERON:0003918!7.66e-07!27;UBERON:0005095!7.66e-07!27;UBERON:0007687!7.66e-07!27;UBERON:0006555!9.00e-07!17;UBERON:0005103!9.00e-07!17;UBERON:0000083!9.00e-07!17;UBERON:0009201!9.00e-07!17;UBERON:0004819!9.00e-07!17;UBERON:0006553!9.00e-07!17;UBERON:0003074!9.00e-07!17;UBERON:0003060!9.00e-07!17 | |ontology_enrichment_uberon=UBERON:0003104!8.32e-12!238;UBERON:0009142!8.32e-12!238;UBERON:0002100!1.26e-11!216;UBERON:0000119!6.97e-11!312;UBERON:0000483!2.58e-10!309;UBERON:0005256!1.26e-09!143;UBERON:0000490!1.54e-09!138;UBERON:0003914!1.63e-09!118;UBERON:0004211!7.73e-08!16;UBERON:0001285!7.73e-08!16;UBERON:0007684!7.73e-08!16;UBERON:0003220!7.73e-08!16;UBERON:0004208!7.73e-08!16;UBERON:0009569!9.67e-08!113;UBERON:0000486!1.30e-07!82;UBERON:0004290!1.99e-07!70;UBERON:0000481!2.22e-07!347;UBERON:0005177!7.52e-07!107;UBERON:0002113!7.66e-07!27;UBERON:0003918!7.66e-07!27;UBERON:0005095!7.66e-07!27;UBERON:0007687!7.66e-07!27;UBERON:0006555!9.00e-07!17;UBERON:0005103!9.00e-07!17;UBERON:0000083!9.00e-07!17;UBERON:0009201!9.00e-07!17;UBERON:0004819!9.00e-07!17;UBERON:0006553!9.00e-07!17;UBERON:0003074!9.00e-07!17;UBERON:0003060!9.00e-07!17 | ||
|ontology_enrichment_uberon_v019=UBERON:0002113;2.58e-09;24!UBERON:0011143;2.58e-09;24!UBERON:0006554;2.64e-09;30!UBERON:0001008;2.64e-09;30!UBERON:0006555;6.91e-09;15!UBERON:0004819;6.91e-09;15!UBERON:0001285;6.91e-09;15!UBERON:0007684;6.91e-09;15!UBERON:0000353;6.92e-08;15!UBERON:0001225;2.37e-07;12!UBERON:0008987;2.37e-07;12!UBERON:0001851;2.50e-07;15!UBERON:0000490;5.76e-07;33 | |ontology_enrichment_uberon_v019=UBERON:0002113;2.58e-09;24!UBERON:0011143;2.58e-09;24!UBERON:0006554;2.64e-09;30!UBERON:0001008;2.64e-09;30!UBERON:0006555;6.91e-09;15!UBERON:0004819;6.91e-09;15!UBERON:0001285;6.91e-09;15!UBERON:0007684;6.91e-09;15!UBERON:0000353;6.92e-08;15!UBERON:0001225;2.37e-07;12!UBERON:0008987;2.37e-07;12!UBERON:0001851;2.50e-07;15!UBERON:0000490;5.76e-07;33 | ||
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| ||
|short_description=p1@TIMM50 | |short_description=p1@TIMM50 | ||
}} | }} |
Latest revision as of 23:48, 17 September 2015
Short description: | p1@TIMM50 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TIMM50_5end |
Coexpression cluster: | C2487_Alveolar_Mesenchymal_Renal_Placental_Bronchial_acute_Tracheal |
Association with transcript: | -19bp_to_ENST00000544017_5end |
EntrezGene: | TIMM50 |
HGNC: | 23656 |
UniProt: | Q330K1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.01e-27 | 253 |
embryonic cell | 1.38e-25 | 250 |
mesodermal cell | 2.30e-12 | 121 |
epithelial cell of nephron | 6.87e-09 | 15 |
kidney cell | 4.43e-08 | 17 |
kidney epithelial cell | 4.43e-08 | 17 |
ectodermal cell | 1.17e-07 | 72 |
kidney cortical cell | 2.37e-07 | 12 |
renal cortical epithelial cell | 2.37e-07 | 12 |
electrically responsive cell | 5.97e-07 | 61 |
electrically active cell | 5.97e-07 | 61 |
lining cell | 8.36e-07 | 58 |
barrier cell | 8.36e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.28e-15 | 235 |
disease of cellular proliferation | 1.43e-14 | 239 |
organ system cancer | 6.22e-08 | 137 |
cell type cancer | 1.12e-07 | 143 |
myeloid leukemia | 3.24e-07 | 31 |
leukemia | 8.24e-07 | 39 |