FFCP PHASE1:Hg19::chr13:76056435..76056485,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:76056435..76056485,-
|short_description=p4@TBC1D4
|description=CAGE_peak_4_at_TBC1D4_5end
|association_with_transcript=-185bp_to_ENST00000377625,ENST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9882 | |EntrezGene=9882 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19165 | |HGNC=19165 | ||
|TSSclassifier=strong | |||
|UniProt=O60343 | |UniProt=O60343 | ||
|association_with_transcript=-185bp_to_ENST00000377625,ENST00000377636,ENST00000425511,ENST00000431480,NM_014832,uc001vjl.1,uc010aer.2,uc010aes.2_5end | |||
|cluster_id=chr13:76056435..76056485,- | |||
|description=CAGE_peak_4_at_TBC1D4_5end | |||
|id=chr13:76056435..76056485,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.86e-23!115;UBERON:0002616!6.81e-16!59;UBERON:0001049!1.59e-15!57;UBERON:0005068!1.59e-15!57;UBERON:0006241!1.59e-15!57;UBERON:0007135!1.59e-15!57;UBERON:0000955!4.93e-15!69;UBERON:0006238!4.93e-15!69;UBERON:0001017!1.83e-13!82;UBERON:0005743!6.46e-12!86;UBERON:0003080!9.10e-12!42;UBERON:0000073!1.11e-11!94;UBERON:0001016!1.11e-11!94;UBERON:0002020!1.46e-11!34;UBERON:0003528!1.46e-11!34;UBERON:0002619!1.84e-11!22;UBERON:0001893!1.91e-11!34;UBERON:0002780!2.96e-11!41;UBERON:0001890!2.96e-11!41;UBERON:0006240!2.96e-11!41;UBERON:0002791!5.73e-11!33;UBERON:0001869!8.55e-11!32;UBERON:0001950!2.97e-10!20;UBERON:0000956!5.49e-10!25;UBERON:0000203!5.49e-10!25;UBERON:0002346!1.43e-09!90;UBERON:0000477!4.16e-09!286;UBERON:0004111!4.79e-09!241;UBERON:0003075!4.89e-09!86;UBERON:0007284!4.89e-09!86;UBERON:0000475!1.26e-08!365;UBERON:0000468!2.67e-08!659;UBERON:0000483!5.20e-08!309;UBERON:0000025!5.57e-08!194;UBERON:0000119!5.64e-08!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.74e-15;22!UBERON:0001950;7.31e-14;20!UBERON:0000956;1.27e-12;25!UBERON:0000203;1.27e-12;25!UBERON:0003528;4.35e-12;34!UBERON:0002020;4.35e-12;34!UBERON:0001893;6.45e-12;34!UBERON:0001869;7.44e-12;32!UBERON:0002791;7.75e-12;32!UBERON:0002780;1.83e-09;41!UBERON:0001890;1.83e-09;41!UBERON:0000073;3.13e-09;53!UBERON:0002616;3.13e-09;53!UBERON:0007023;6.56e-08;114!UBERON:0001017;2.25e-07;75!UBERON:0000955;2.76e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.92e-31,114;UBERON:0000955,2.68e-16,68;UBERON:0006238,2.68e-16,68;UBERON:0002619,1.33e-15,22;UBERON:0001049,1.90e-15,56;UBERON:0005068,1.90e-15,56;UBERON:0006241,1.90e-15,56;UBERON:0007135,1.90e-15,56;UBERON:0000073,2.21e-15,53;UBERON:0002616,2.21e-15,53;UBERON:0003528,1.29e-14,34;UBERON:0002020,1.29e-14,34;UBERON:0001893,1.84e-14,34;UBERON:0001950,6.08e-14,20;UBERON:0001017,1.08e-13,81;UBERON:0001869,1.41e-13,32;UBERON:0002791,1.57e-13,32;UBERON:0002780,9.33e-13,41;UBERON:0001890,9.33e-13,41;UBERON:0003080,9.33e-13,41;UBERON:0006240,9.33e-13,41;UBERON:0000956,1.00e-12,25;UBERON:0000203,1.00e-12,25;UBERON:0001016,2.99e-12,89;UBERON:0002346,8.64e-10,86;UBERON:0003075,1.50e-09,82;UBERON:0007284,1.50e-09,82;UBERON:0010371,1.12e-08,104;UBERON:0000479,2.16e-08,773;UBERON:0010314,5.91e-08,132;UBERON:0000025,4.90e-07,192;UBERON:0000483,7.04e-07,306;UBERON:0004111,7.26e-07,240 | |||
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|phase1_expression=1.2717486548939,3.21150785836475,1.40954404095971,2.00146596706261,4.46961094427288,0.872338524100369,0,4.42203911398782,1.04474251279935,0,0,0,0,1.23766352960047,0,1.34465029290355,0.602694528023977,2.92124036154949,1.95173119516203,0.984968464614303,1.63200552995402,0.940364164434263,0,0.821246550437305,0.627713197974014,0.61130724598361,0,0.157421562627358,0,0,0,0,0,0,0.309868802321207,0,0,0.553995408531877,0.401088894940283,0.217010870715852,0.223915474239924,0.32389366601898,0.257575567634187,0,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0.316462387440884,0,0,0,0.44931452458598,0.150176892841506,0.16072558669708,0.285012743741249,0.19891667719909,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,9.75227465255847,0,0.895037932904712,0,1.50401373190767,1.73815822752988,0,0.973269740605272,0.756278537312543,0.443458794925128,1.40535657109002,2.5540919722054,0,0,0,0,0,11.2090593423511,3.43196946468077,7.4291500265913,0.39752481473341,0,1.04142150482278,0,0,1.92582629358047,0.417989933073621,1.8089173141853,1.77883131343355,1.00416183829401,1.61131726843659,0.760272105718513,2.68468263302986,1.10298924103761,1.62028389576352,1.87529429396568,0.898117490504679,1.23872628531654,1.53316637465883,1.89853131913626,0.732806975721629,0,0,0.436094052142534,0.993943903390637,0.506522046658319,1.05927344650575,0.860509862246441,0.354668382198357,0.560677600142307,0,1.2333377420858,0,0.942974704487816,0.980771418680752,3.17850598054356,4.03323147135999,0,0.312160076830321,1.71141546463335,0.896692083310806,0.587172493218824,0.485618833104395,1.82586048712923,0,0.245668634623536,0.826606249406124,1.18800285728205,1.23633464639278,1.82032272387605,0.718618141816238,0.673344455816265,0.750711119231785,0,0.877955241761676,0,0.751190294532984,0.907457465280168,1.97328599257748,1.06778694409284,0.211931901159562,0.900273288253207,1.64884046781502,1.54584324027377,0.558350568994769,1.35021065793013,1.07180705677318,1.26216887122057,1.10459878370759,1.13152239773168,3.55009592516614,0.503760491138201,0.67824236924195,0,0.272746120590835,0,0.609868530647977,0.662648841607426,0.116193942869518,0.829288440122964,0.756962552626885,0.36497735907583,3.12899064659632,3.21620469096443,1.38134921352481,6.96551892047969,2.88751792667834,0.118306800039844,0.168584690078102,0.482022059766964,0,0,0.474541238222193,0.269662616320329,0.196221465125346,0,2.21446636387394,0,2.057870056657,0,0,0,2.36315962672562,0,1.8448265781467,0.343135620597051,0.439001141634502,0,0.201057944823262,0.185176890317059,0,0,0,0,0.70445216541493,0.577465791044295,0,1.14152491340759,0,0,0.738651018262192,0,0.148631162288728,0,0,0.283550194484773,0.0895585227028483,0,1.15014803749563,0.985326475791887,3.34584049250259,4.14656231081544,3.02651902175619,3.02981840223312,0.444485260045183,0,1.17217447210047,0,0.616964956219941,0.300343057843917,0,0.336393253036082,0.43596006883328,0.7333828582095,1.55126058909333,10.7296933755565,0,1.06375246633948,0,1.28603687131071,0,0.532844358032199,1.00084595560703,0.542621605391443,0,0.325736184293735,0.355391948742546,1.58390374586686,0,1.74306691720059,0.299918973546171,0,0.502257091432126,0,0.479249710983165,0,0,2.02693829334611,1.64381058040307,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,1.59498939234882,2.50085260529839,0,0,0.178428988797162,0,0.468565659970853,1.50473049863859,0,0,0.664225598535437,1.47495334833363,1.30325421702124,1.37060810223918,0.686286847621712,0.206768026122887,0,0.106727557803444,0,1.66435439510497,0.30239029332968,0.992431231275107,1.68808170616869,1.12264037773229,1.92208723883551,0.511707249066704,0.64341568457443,2.96836132889982,0.462629081407967,1.24293207719189,1.23190734020714,1.03850885836724,1.16210378459959,1.93375119346596,0.802025881213139,0.0920809889358963,0.229628896329213,0.546273504020151,0.655622074797121,0.451199612907412,0.15403067420883,0,0,0.422206515571503,2.27466768141793,0.850468526382578,1.0795795805107,1.54227252690289,1.35473218771926,0,0.254876273045038,0,0,0,0,0,0,0,1.854738209659,1.28197250745681,0.660075999364704,0,0,1.6068392984416,0.773365746336976,0.924291702687866,2.30255512089194,0.413509717453592,3.00776685631166,1.45016693914229,1.10794615640931,1.4245125703478,0.330569830721956,0.192190067365106,0.510450849978337,0.50578890427775,0.464845549297286,1.5740617341532,1.3940745403212,0.924100740528266,0,1.73986598415015,0.37064843820784,0.286249773483982,1.116475108079,0.316379424718726,1.33441135746677,0,2.56763392820352,0.318203247925937,0,1.79872457583315,2.74537029736055,0.706874414074119,0.404364963146632,0,0,0,0.243713489631284,1.05650146756755,0.9554993798559,0.424216295861138,0,0.551365343546124,0,0.876901770507525,1.15755106853338,0.655894752046633,0.202910376962704,0,0.845086807596724,1.72093622644862,1.3754865741837,0,0,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| ||
|short_description=p4@TBC1D4 | |||
}} | }} |
Latest revision as of 23:44, 17 September 2015
Short description: | p4@TBC1D4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TBC1D4_5end |
Coexpression cluster: | NA |
Association with transcript: | -185bp_to_ENST00000377625, ENST00000377636, ENST00000425511, ENST00000431480, NM_014832, uc001vjl.1, uc010aer.2, uc010aes.2_5end |
EntrezGene: | TBC1D4 |
HGNC: | 19165 |
UniProt: | O60343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.92e-31 | 114 |
brain | 2.68e-16 | 68 |
future brain | 2.68e-16 | 68 |
regional part of cerebral cortex | 1.33e-15 | 22 |
neural tube | 1.90e-15 | 56 |
neural rod | 1.90e-15 | 56 |
future spinal cord | 1.90e-15 | 56 |
neural keel | 1.90e-15 | 56 |
regional part of nervous system | 2.21e-15 | 53 |
regional part of brain | 2.21e-15 | 53 |
brain grey matter | 1.29e-14 | 34 |
gray matter | 1.29e-14 | 34 |
telencephalon | 1.84e-14 | 34 |
neocortex | 6.08e-14 | 20 |
central nervous system | 1.08e-13 | 81 |
cerebral hemisphere | 1.41e-13 | 32 |
regional part of telencephalon | 1.57e-13 | 32 |
regional part of forebrain | 9.33e-13 | 41 |
forebrain | 9.33e-13 | 41 |
anterior neural tube | 9.33e-13 | 41 |
future forebrain | 9.33e-13 | 41 |
cerebral cortex | 1.00e-12 | 25 |
pallium | 1.00e-12 | 25 |
nervous system | 2.99e-12 | 89 |
neurectoderm | 8.64e-10 | 86 |
neural plate | 1.50e-09 | 82 |
presumptive neural plate | 1.50e-09 | 82 |
ecto-epithelium | 1.12e-08 | 104 |
tissue | 2.16e-08 | 773 |
structure with developmental contribution from neural crest | 5.91e-08 | 132 |
tube | 4.90e-07 | 192 |
epithelium | 7.04e-07 | 306 |
anatomical conduit | 7.26e-07 | 240 |