FFCP PHASE1:Hg19::chr5:42951689..42951748,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:42951689..42951748,+
|short_description=p3@LOC100129186
|description=CAGE_peak_3_at_LOC100129186_5end
|association_with_transcript=154bp_to_AK128204_5end
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=100129186 | |EntrezGene=100129186 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=154bp_to_AK128204_5end | |||
|cluster_id=chr5:42951689..42951748,+ | |||
|coexpression_cluster_id=C23 | |||
|description=CAGE_peak_3_at_LOC100129186_5end | |||
|id=chr5:42951689..42951748,+ | |||
|ontology_enrichment_celltype=CL:0000738!9.01e-31!140;CL:0002087!1.84e-24!119;CL:0000988!7.99e-24!182;CL:0002031!3.14e-23!124;CL:0000037!5.16e-23!172;CL:0000566!5.16e-23!172;CL:0000791!1.11e-19!18;CL:0000789!1.11e-19!18;CL:0002420!1.11e-19!18;CL:0002419!1.11e-19!18;CL:0000790!1.11e-19!18;CL:0002032!3.13e-19!165;CL:0000837!3.13e-19!165;CL:0000542!6.82e-18!53;CL:0000051!6.82e-18!53;CL:0000084!9.66e-18!25;CL:0000827!9.66e-18!25;CL:0000838!3.35e-17!52;CL:0000625!1.53e-11!11;CL:0000134!1.80e-10!358;CL:0002320!4.22e-10!365;CL:0000766!1.15e-09!76;CL:0000557!3.81e-09!71;CL:0000624!4.76e-09!6;CL:0002057!1.02e-08!42;CL:0000219!2.88e-08!390;CL:0000080!7.42e-08!6;CL:0000839!8.66e-08!70;CL:0000860!1.06e-07!45;CL:0000034!2.54e-07!444;CL:0002009!6.93e-07!65;CL:0000048!7.20e-07!430;CL:0000723!9.78e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.24e-45;18!CL:0000789;1.24e-45;18!CL:0002419;1.24e-45;18!CL:0000084;7.47e-36;25!CL:0000625;6.83e-29;11!CL:0000624;1.87e-21;6!CL:0000542;4.71e-16;53!CL:0000898;6.97e-12;3!CL:0000623;1.29e-11;3!CL:0000226;4.96e-11;3!CL:0000842;4.96e-11;3!CL:0000767;1.21e-10;3!CL:0002087;1.45e-08;104!CL:0000815;2.06e-08;2!CL:0000792;2.06e-08;2!CL:0002677;2.06e-08;2!CL:0000094;8.22e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,9.68e-46,18;CL:0000789,9.68e-46,18;CL:0002420,9.68e-46,18;CL:0002419,9.68e-46,18;CL:0000790,9.68e-46,18;CL:0000084,5.35e-36,25;CL:0000827,5.35e-36,25;CL:0000838,2.69e-29,52;CL:0000625,5.55e-29,11;CL:0000542,1.26e-28,53;CL:0000051,1.26e-28,53;CL:0000738,4.41e-26,136;CL:0000037,4.82e-22,168;CL:0000988,9.69e-22,177;CL:0002087,9.86e-22,115;CL:0000624,1.78e-21,6;CL:0002031,2.22e-17,120;CL:0002032,1.16e-16,161;CL:0000837,1.16e-16,161;CL:0000898,6.62e-12,3;CL:0000623,1.34e-11,3;CL:0000825,1.34e-11,3;CL:0000226,5.14e-11,3;CL:0000842,5.14e-11,3;CL:0000767,1.01e-10,3;CL:0000815,1.95e-08,2;CL:0000792,1.95e-08,2;CL:0002677,1.95e-08,2;CL:0000094,7.14e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;1.24e-45;18!CL:0000051;4.71e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.29e-17!102;UBERON:0003061!7.29e-17!102;UBERON:0002193!1.81e-15!112;UBERON:0002371!8.58e-10!80;UBERON:0001474!9.09e-10!86;UBERON:0002384!1.87e-09!375;UBERON:0002405!1.62e-08!115;UBERON:0004177!6.63e-08!7;UBERON:0004765!8.91e-08!101;UBERON:0001434!8.91e-08!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.40e-07;2!UBERON:0005058;1.40e-07;2!UBERON:0009113;1.40e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.51e-08,4;UBERON:0005058,2.51e-08,4;UBERON:0009113,2.51e-08,4;UBERON:0003295,2.51e-08,4;UBERON:0005562,2.51e-08,4 | |||
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| ||
|short_description=p3@LOC100129186 | |||
}} | }} |
Latest revision as of 23:34, 17 September 2015
Short description: | p3@LOC100129186 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LOC100129186_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | 154bp_to_AK128204_5end |
EntrezGene: | LOC100129186 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 9.68e-46 | 18 |
alpha-beta T cell | 9.68e-46 | 18 |
immature T cell | 9.68e-46 | 18 |
mature T cell | 9.68e-46 | 18 |
immature alpha-beta T cell | 9.68e-46 | 18 |
T cell | 5.35e-36 | 25 |
pro-T cell | 5.35e-36 | 25 |
lymphoid lineage restricted progenitor cell | 2.69e-29 | 52 |
CD8-positive, alpha-beta T cell | 5.55e-29 | 11 |
lymphocyte | 1.26e-28 | 53 |
common lymphoid progenitor | 1.26e-28 | 53 |
leukocyte | 4.41e-26 | 136 |
hematopoietic stem cell | 4.82e-22 | 168 |
hematopoietic cell | 9.69e-22 | 177 |
nongranular leukocyte | 9.86e-22 | 115 |
CD4-positive, alpha-beta T cell | 1.78e-21 | 6 |
hematopoietic lineage restricted progenitor cell | 2.22e-17 | 120 |
hematopoietic oligopotent progenitor cell | 1.16e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.16e-16 | 161 |
naive T cell | 6.62e-12 | 3 |
natural killer cell | 1.34e-11 | 3 |
pro-NK cell | 1.34e-11 | 3 |
single nucleate cell | 5.14e-11 | 3 |
mononuclear cell | 5.14e-11 | 3 |
basophil | 1.01e-10 | 3 |
regulatory T cell | 1.95e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.95e-08 | 2 |
naive regulatory T cell | 1.95e-08 | 2 |
granulocyte | 7.14e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.51e-08 | 4 |
hemolymphoid system gland | 2.51e-08 | 4 |
thymic region | 2.51e-08 | 4 |
pharyngeal gland | 2.51e-08 | 4 |
thymus primordium | 2.51e-08 | 4 |