FFCP PHASE1:Hg19::chr4:48782259..48782335,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:48782259..48782335,- to FFCP PHASE1:Hg19::chr4:48782259..48782335,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=285527 | |EntrezGene=285527 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29127 | |HGNC=29127 | ||
|TSSclassifier=strong | |||
|UniProt=O94915,F2Z2S2,F5GX82,B3KXG5,Q6ZR29 | |UniProt=O94915,F2Z2S2,F5GX82,B3KXG5,Q6ZR29 | ||
|association_with_transcript=0bp_to_ENST00000264319,ENST00000358350,ENST00000505437,ENST00000507711,ENST00000509886,ENST00000514783,ENST00000537810,NM_015030,uc003gyh.1,uc003gyk.2,uc003gym.1,uc003gyn.3_5end | |||
|cluster_id=chr4:48782259..48782335,- | |||
|description=CAGE_peak_1_at_FRYL_5end | |||
|id=chr4:48782259..48782335,- | |||
|ontology_enrichment_celltype=CL:0000738!5.03e-25!140;CL:0000037!2.19e-23!172;CL:0000566!2.19e-23!172;CL:0002032!1.42e-20!165;CL:0000837!1.42e-20!165;CL:0000988!7.00e-20!182;CL:0002031!1.14e-17!124;CL:0002087!1.31e-17!119;CL:0000838!7.02e-16!52;CL:0000542!1.46e-15!53;CL:0000051!1.46e-15!53;CL:0000791!8.38e-10!18;CL:0000789!8.38e-10!18;CL:0002420!8.38e-10!18;CL:0002419!8.38e-10!18;CL:0000790!8.38e-10!18;CL:0000084!2.14e-09!25;CL:0000827!2.14e-09!25;CL:0000763!1.11e-07!112;CL:0000049!1.11e-07!112;CL:0000625!1.17e-07!11;CL:0000766!2.78e-07!76;CL:0000236!2.90e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;8.31e-10;18!CL:0000789;8.31e-10;18!CL:0002419;8.31e-10;18!CL:0000542;1.43e-09;53!CL:0000084;2.08e-09;25!CL:0000625;1.20e-07;11!CL:0000236;2.04e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.06e-27,136;CL:0000037,1.19e-25,168;CL:0002032,1.02e-22,161;CL:0000837,1.02e-22,161;CL:0000988,1.73e-22,177;CL:0002031,5.63e-20,120;CL:0002087,5.67e-20,115;CL:0000838,7.02e-16,52;CL:0000542,1.46e-15,53;CL:0000051,1.46e-15,53;CL:0000791,8.38e-10,18;CL:0000789,8.38e-10,18;CL:0002420,8.38e-10,18;CL:0002419,8.38e-10,18;CL:0000790,8.38e-10,18;CL:0000084,2.14e-09,25;CL:0000827,2.14e-09,25;CL:0000763,4.09e-09,108;CL:0000049,4.09e-09,108;CL:0000766,5.01e-09,72;CL:0000625,1.17e-07,11;CL:0000557,2.67e-07,67;CL:0000236,2.90e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;8.31e-10;18!CL:0000051;1.43e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.19e-28!115;UBERON:0001049!3.80e-18!57;UBERON:0005068!3.80e-18!57;UBERON:0006241!3.80e-18!57;UBERON:0007135!3.80e-18!57;UBERON:0003080!1.13e-15!42;UBERON:0002780!1.84e-15!41;UBERON:0001890!1.84e-15!41;UBERON:0006240!1.84e-15!41;UBERON:0002616!1.60e-14!59;UBERON:0000955!4.51e-13!69;UBERON:0006238!4.51e-13!69;UBERON:0001893!6.45e-13!34;UBERON:0002020!9.40e-13!34;UBERON:0003528!9.40e-13!34;UBERON:0001017!1.53e-12!82;UBERON:0002791!2.05e-12!33;UBERON:0001869!1.13e-11!32;UBERON:0005743!3.00e-11!86;UBERON:0000073!5.20e-10!94;UBERON:0001016!5.20e-10!94;UBERON:0003075!5.69e-10!86;UBERON:0007284!5.69e-10!86;UBERON:0002390!3.10e-09!102;UBERON:0003061!3.10e-09!102;UBERON:0002193!3.51e-09!112;UBERON:0002346!7.85e-09!90;UBERON:0000956!1.05e-08!25;UBERON:0000203!1.05e-08!25;UBERON:0000153!3.53e-08!129;UBERON:0007811!3.53e-08!129;UBERON:0002619!5.93e-08!22;UBERON:0003056!2.29e-07!61;UBERON:0001950!2.33e-07!20;UBERON:0000033!7.27e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.11e-11;41!UBERON:0001890;1.11e-11;41!UBERON:0001893;6.88e-11;34!UBERON:0003528;1.01e-10;34!UBERON:0002020;1.01e-10;34!UBERON:0002791;1.12e-10;32!UBERON:0001869;1.87e-10;32!UBERON:0000073;3.24e-10;53!UBERON:0002616;3.24e-10;53!UBERON:0007023;1.27e-08;114!UBERON:0000956;1.31e-08;25!UBERON:0000203;1.31e-08;25!UBERON:0002619;7.31e-08;22!UBERON:0001950;2.83e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.66e-28,114;UBERON:0001049,6.40e-18,56;UBERON:0005068,6.40e-18,56;UBERON:0006241,6.40e-18,56;UBERON:0007135,6.40e-18,56;UBERON:0000073,2.08e-16,53;UBERON:0002616,2.08e-16,53;UBERON:0002780,1.84e-15,41;UBERON:0001890,1.84e-15,41;UBERON:0003080,1.84e-15,41;UBERON:0006240,1.84e-15,41;UBERON:0001893,6.45e-13,34;UBERON:0000955,7.59e-13,68;UBERON:0006238,7.59e-13,68;UBERON:0003528,9.40e-13,34;UBERON:0002020,9.40e-13,34;UBERON:0001017,2.54e-12,81;UBERON:0002791,8.43e-12,32;UBERON:0001869,1.13e-11,32;UBERON:0002390,6.09e-11,98;UBERON:0003061,6.09e-11,98;UBERON:0001016,6.59e-11,89;UBERON:0002193,8.66e-11,108;UBERON:0003075,3.62e-10,82;UBERON:0007284,3.62e-10,82;UBERON:0002346,5.60e-09,86;UBERON:0000956,1.05e-08,25;UBERON:0000203,1.05e-08,25;UBERON:0002619,5.93e-08,22;UBERON:0010371,1.02e-07,104;UBERON:0003056,1.34e-07,61;UBERON:0001950,2.33e-07,20;UBERON:0002405,3.97e-07,93 | |||
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| ||
|short_description=p1@FRYL | |||
}} | }} |
Latest revision as of 23:02, 17 September 2015
Short description: | p1@FRYL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FRYL_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000264319, ENST00000358350, ENST00000505437, ENST00000507711, ENST00000509886, ENST00000514783, ENST00000537810, NM_015030, uc003gyh.1, uc003gyk.2, uc003gym.1, uc003gyn.3_5end |
EntrezGene: | FRYL |
HGNC: | 29127 |
UniProt: | O94915F2Z2S2F5GX82B3KXG5Q6ZR29 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.06e-27 | 136 |
hematopoietic stem cell | 1.19e-25 | 168 |
hematopoietic oligopotent progenitor cell | 1.02e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.02e-22 | 161 |
hematopoietic cell | 1.73e-22 | 177 |
hematopoietic lineage restricted progenitor cell | 5.63e-20 | 120 |
nongranular leukocyte | 5.67e-20 | 115 |
lymphoid lineage restricted progenitor cell | 7.02e-16 | 52 |
lymphocyte | 1.46e-15 | 53 |
common lymphoid progenitor | 1.46e-15 | 53 |
mature alpha-beta T cell | 8.38e-10 | 18 |
alpha-beta T cell | 8.38e-10 | 18 |
immature T cell | 8.38e-10 | 18 |
mature T cell | 8.38e-10 | 18 |
immature alpha-beta T cell | 8.38e-10 | 18 |
T cell | 2.14e-09 | 25 |
pro-T cell | 2.14e-09 | 25 |
myeloid cell | 4.09e-09 | 108 |
common myeloid progenitor | 4.09e-09 | 108 |
myeloid leukocyte | 5.01e-09 | 72 |
CD8-positive, alpha-beta T cell | 1.17e-07 | 11 |
granulocyte monocyte progenitor cell | 2.67e-07 | 67 |
B cell | 2.90e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.66e-28 | 114 |
neural tube | 6.40e-18 | 56 |
neural rod | 6.40e-18 | 56 |
future spinal cord | 6.40e-18 | 56 |
neural keel | 6.40e-18 | 56 |
regional part of nervous system | 2.08e-16 | 53 |
regional part of brain | 2.08e-16 | 53 |
regional part of forebrain | 1.84e-15 | 41 |
forebrain | 1.84e-15 | 41 |
anterior neural tube | 1.84e-15 | 41 |
future forebrain | 1.84e-15 | 41 |
telencephalon | 6.45e-13 | 34 |
brain | 7.59e-13 | 68 |
future brain | 7.59e-13 | 68 |
brain grey matter | 9.40e-13 | 34 |
gray matter | 9.40e-13 | 34 |
central nervous system | 2.54e-12 | 81 |
regional part of telencephalon | 8.43e-12 | 32 |
cerebral hemisphere | 1.13e-11 | 32 |
hematopoietic system | 6.09e-11 | 98 |
blood island | 6.09e-11 | 98 |
nervous system | 6.59e-11 | 89 |
hemolymphoid system | 8.66e-11 | 108 |
neural plate | 3.62e-10 | 82 |
presumptive neural plate | 3.62e-10 | 82 |
neurectoderm | 5.60e-09 | 86 |
cerebral cortex | 1.05e-08 | 25 |
pallium | 1.05e-08 | 25 |
regional part of cerebral cortex | 5.93e-08 | 22 |
ecto-epithelium | 1.02e-07 | 104 |
pre-chordal neural plate | 1.34e-07 | 61 |
neocortex | 2.33e-07 | 20 |
immune system | 3.97e-07 | 93 |