FFCP PHASE1:Hg19::chr2:165630270..165630300,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22837 | |EntrezGene=22837 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23571 | |HGNC=23571 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-6bp_to_ENST00000452626_5end | |association_with_transcript=-6bp_to_ENST00000452626_5end | ||
|cluster_id=chr2:165630270..165630300,- | |||
|coexpression_cluster_id=C161 | |||
|description=CAGE_peak_10_at_COBLL1_5end | |description=CAGE_peak_10_at_COBLL1_5end | ||
|id=chr2:165630270..165630300,- | |id=chr2:165630270..165630300,- | ||
|ontology_enrichment_celltype=CL:0000077!1.09e-09!19;CL:0002541!1.01e-08!3;CL:0002586!2.33e-08!3 | |ontology_enrichment_celltype=CL:0000077!1.09e-09!19;CL:0002541!1.01e-08!3;CL:0002586!2.33e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000077;1.13e-25;19!CL:0002541;6.76e-24;3!CL:0002586;5.71e-11;3!CL:0000149;1.91e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.11e-25,19;CL:0002541,6.77e-24,3;CL:0002586,5.71e-11,3;CL:0000149,1.91e-08,4;CL:0000213,1.12e-07,58;CL:0000215,1.12e-07,58;CL:0000076,5.58e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.04e-09;1!UBERON:0005425;9.17e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.14e-15!115;UBERON:0005743!7.97e-10!86;UBERON:0002346!2.00e-09!90;UBERON:0000073!2.70e-09!94;UBERON:0001016!2.70e-09!94;UBERON:0003075!3.29e-09!86;UBERON:0007284!3.29e-09!86;UBERON:0000476!1.01e-08!3;UBERON:0000920!1.01e-08!3;UBERON:0001781!2.33e-08!3;UBERON:0001782!2.33e-08!3;UBERON:0005424!2.33e-08!3;UBERON:0000966!5.53e-08!5;UBERON:0005388!5.53e-08!5;UBERON:0001802!5.53e-08!5;UBERON:0001017!9.42e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;6.76e-24;3!UBERON:0000920;6.76e-24;3!UBERON:0005631;1.64e-12;10!UBERON:0000158;1.64e-12;10!UBERON:0001781;5.71e-11;3!UBERON:0001782;5.71e-11;3!UBERON:0000941;9.17e-09;1!UBERON:0001785;9.17e-09;1!UBERON:0002464;9.17e-09;1!UBERON:0004904;9.17e-09;1!UBERON:0001021;9.17e-09;1!UBERON:0000478;6.35e-08;24!UBERON:0000966;6.37e-07;5!UBERON:0005388;6.37e-07;5!UBERON:0001802;6.37e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.77e-24,3;UBERON:0003124,3.84e-18,7;UBERON:0001781,1.97e-17,4;UBERON:0005631,9.50e-14,14;UBERON:0000158,9.50e-14,14;UBERON:0000966,8.13e-12,6;UBERON:0005388,8.13e-12,6;UBERON:0001802,8.13e-12,6;UBERON:0001782,5.71e-11,3;UBERON:0005424,5.71e-11,3;UBERON:0000941,8.49e-09,1;UBERON:0001785,8.49e-09,1;UBERON:0002464,8.49e-09,1;UBERON:0004904,8.49e-09,1;UBERON:0001021,8.49e-09,1;UBERON:0003902,8.49e-09,1;UBERON:0005425,8.49e-09,1;UBERON:0000478,6.07e-08,24 | |||
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| ||
|short_description=p10@COBLL1 | |short_description=p10@COBLL1 | ||
}} | }} |
Latest revision as of 23:02, 17 September 2015
Short description: | p10@COBLL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_COBLL1_5end |
Coexpression cluster: | C161_mesothelioma_Mesothelial_acute_mesenchymal_extraskeletal_renal_placenta |
Association with transcript: | -6bp_to_ENST00000452626_5end |
EntrezGene: | COBLL1 |
HGNC: | 23571 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.11e-25 | 19 |
chorionic membrane mesenchymal stem cell | 6.77e-24 | 3 |
retinal pigment epithelial cell | 5.71e-11 | 3 |
visual pigment cell | 1.91e-08 | 4 |
lining cell | 1.12e-07 | 58 |
barrier cell | 1.12e-07 | 58 |
squamous epithelial cell | 5.58e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 6.77e-24 | 3 |
chorion | 3.84e-18 | 7 |
layer of retina | 1.97e-17 | 4 |
extraembryonic membrane | 9.50e-14 | 14 |
membranous layer | 9.50e-14 | 14 |
retina | 8.13e-12 | 6 |
photoreceptor array | 8.13e-12 | 6 |
posterior segment of eyeball | 8.13e-12 | 6 |
pigmented layer of retina | 5.71e-11 | 3 |
presumptive retinal pigmented epithelium | 5.71e-11 | 3 |
cranial nerve II | 8.49e-09 | 1 |
cranial nerve | 8.49e-09 | 1 |
nerve trunk | 8.49e-09 | 1 |
nerve connecting eye with brain | 8.49e-09 | 1 |
nerve | 8.49e-09 | 1 |
retinal neural layer | 8.49e-09 | 1 |
presumptive neural retina | 8.49e-09 | 1 |
extraembryonic structure | 6.07e-08 | 24 |