FFCP PHASE1:Hg19::chr19:3982959..3983004,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26812 | |EntrezGene=26812 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10166 | |HGNC=10166 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-389bp_to_NR_002602,uc002lzf.1_5end | |association_with_transcript=-389bp_to_NR_002602,uc002lzf.1_5end | ||
|cluster_id=chr19:3982959..3983004,- | |||
|coexpression_cluster_id=C2488 | |||
|description=CAGE_peak_2_at_SNORD37_5end | |description=CAGE_peak_2_at_SNORD37_5end | ||
|id=chr19:3982959..3983004,- | |id=chr19:3982959..3983004,- | ||
|ontology_enrichment_celltype=CL:0000183!1.68e-08!59;CL:0000393!2.66e-08!60;CL:0000211!2.66e-08!60;CL:0000055!3.49e-08!180;CL:0000680!4.29e-08!57;CL:0000056!4.29e-08!57;CL:0000355!4.29e-08!57;CL:0000187!5.75e-08!54;CL:0000220!6.67e-08!246;CL:0002321!7.64e-08!248;CL:0000192!1.87e-07!42;CL:0000514!1.87e-07!42;CL:0000222!1.90e-07!119;CL:0000144!4.19e-07!625;CL:0002371!7.11e-07!591 | |ontology_enrichment_celltype=CL:0000183!1.68e-08!59;CL:0000393!2.66e-08!60;CL:0000211!2.66e-08!60;CL:0000055!3.49e-08!180;CL:0000680!4.29e-08!57;CL:0000056!4.29e-08!57;CL:0000355!4.29e-08!57;CL:0000187!5.75e-08!54;CL:0000220!6.67e-08!246;CL:0002321!7.64e-08!248;CL:0000192!1.87e-07!42;CL:0000514!1.87e-07!42;CL:0000222!1.90e-07!119;CL:0000144!4.19e-07!625;CL:0002371!7.11e-07!591 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.82e-08,61;CL:0000211,2.82e-08,61;CL:0000680,3.99e-08,58;CL:0000056,3.99e-08,58;CL:0000355,3.99e-08,58;CL:0000187,5.38e-08,55;CL:0002321,8.80e-08,250;CL:0000222,9.59e-08,121;CL:0000192,1.83e-07,43;CL:0000514,1.83e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!9.35e-11!70;UBERON:0000486!4.85e-10!82;UBERON:0000914!1.30e-09!83;UBERON:0002329!1.30e-09!83;UBERON:0003077!1.30e-09!83;UBERON:0003059!1.30e-09!83;UBERON:0007282!1.30e-09!83;UBERON:0009618!1.30e-09!83;UBERON:0007285!1.30e-09!83;UBERON:0001134!6.04e-09!61;UBERON:0002036!6.04e-09!61;UBERON:0003082!6.04e-09!61;UBERON:0002385!1.20e-08!63;UBERON:0001015!1.20e-08!63;UBERON:0000383!1.20e-08!63;UBERON:0005256!4.13e-07!143 | |ontology_enrichment_uberon=UBERON:0004290!9.35e-11!70;UBERON:0000486!4.85e-10!82;UBERON:0000914!1.30e-09!83;UBERON:0002329!1.30e-09!83;UBERON:0003077!1.30e-09!83;UBERON:0003059!1.30e-09!83;UBERON:0007282!1.30e-09!83;UBERON:0009618!1.30e-09!83;UBERON:0007285!1.30e-09!83;UBERON:0001134!6.04e-09!61;UBERON:0002036!6.04e-09!61;UBERON:0003082!6.04e-09!61;UBERON:0002385!1.20e-08!63;UBERON:0001015!1.20e-08!63;UBERON:0000383!1.20e-08!63;UBERON:0005256!4.13e-07!143 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,8.05e-12,78;UBERON:0002329,8.36e-11,71;UBERON:0003059,8.36e-11,71;UBERON:0007282,8.36e-11,71;UBERON:0004290,8.36e-11,71;UBERON:0009618,8.36e-11,71;UBERON:0007524,1.16e-10,73;UBERON:0003077,3.23e-10,72;UBERON:0007285,3.23e-10,72;UBERON:0000486,3.57e-10,83;UBERON:0001134,5.55e-09,62;UBERON:0002036,5.55e-09,62;UBERON:0003082,5.55e-09,62;UBERON:0002385,1.34e-08,64;UBERON:0001015,1.34e-08,64;UBERON:0000383,1.34e-08,64;UBERON:0005256,4.32e-08,122 | |||
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| ||
|short_description=p2@SNORD37 | |short_description=p2@SNORD37 | ||
}} | }} |
Latest revision as of 22:13, 17 September 2015
Short description: | p2@SNORD37 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SNORD37_5end |
Coexpression cluster: | C2488_skeletal_Bronchial_Mesenchymal_Adipocyte_iPS_Smooth_pancreas |
Association with transcript: | -389bp_to_NR_002602, uc002lzf.1_5end |
EntrezGene: | SNORD37 |
HGNC: | 10166 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.82e-08 | 61 |
electrically active cell | 2.82e-08 | 61 |
muscle precursor cell | 3.99e-08 | 58 |
myoblast | 3.99e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.99e-08 | 58 |
muscle cell | 5.38e-08 | 55 |
embryonic cell | 8.80e-08 | 250 |
mesodermal cell | 9.59e-08 | 121 |
smooth muscle cell | 1.83e-07 | 43 |
smooth muscle myoblast | 1.83e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 8.05e-12 | 78 |
somite | 8.36e-11 | 71 |
presomitic mesoderm | 8.36e-11 | 71 |
presumptive segmental plate | 8.36e-11 | 71 |
dermomyotome | 8.36e-11 | 71 |
trunk paraxial mesoderm | 8.36e-11 | 71 |
dense mesenchyme tissue | 1.16e-10 | 73 |
paraxial mesoderm | 3.23e-10 | 72 |
presumptive paraxial mesoderm | 3.23e-10 | 72 |
multilaminar epithelium | 3.57e-10 | 83 |
skeletal muscle tissue | 5.55e-09 | 62 |
striated muscle tissue | 5.55e-09 | 62 |
myotome | 5.55e-09 | 62 |
muscle tissue | 1.34e-08 | 64 |
musculature | 1.34e-08 | 64 |
musculature of body | 1.34e-08 | 64 |
trunk mesenchyme | 4.32e-08 | 122 |