FFCP PHASE1:Hg19::chr6:31554962..31554987,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7940 | |EntrezGene=7940 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14189 | |HGNC=14189 | ||
|TSSclassifier=strong | |||
|UniProt=Q5STA5,Q5SP24,O00453,Q2HNT3 | |UniProt=Q5STA5,Q5SP24,O00453,Q2HNT3 | ||
|association_with_transcript=0bp_to_ENST00000376086,ENST00000376092,ENST00000376093,ENST00000376102,NM_001166538,NM_007161,NM_205840,uc003nus.2,uc003nut.2,uc003nuu.2,uc010jst.1,uc010jsu.1,uc010jsx.2_5end | |association_with_transcript=0bp_to_ENST00000376086,ENST00000376092,ENST00000376093,ENST00000376102,NM_001166538,NM_007161,NM_205840,uc003nus.2,uc003nut.2,uc003nuu.2,uc010jst.1,uc010jsu.1,uc010jsx.2_5end | ||
|cluster_id=chr6:31554962..31554987,+ | |||
|coexpression_cluster_id=C92 | |coexpression_cluster_id=C92 | ||
|description=CAGE_peak_5_at_LST1_5end | |description=CAGE_peak_5_at_LST1_5end | ||
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|ontology_enrichment_celltype=CL:0000763!1.67e-60!112;CL:0000049!1.67e-60!112;CL:0000037!2.44e-57!172;CL:0000566!2.44e-57!172;CL:0000766!1.34e-52!76;CL:0000988!9.24e-52!182;CL:0002032!1.12e-51!165;CL:0000837!1.12e-51!165;CL:0002009!1.99e-50!65;CL:0002194!7.57e-49!63;CL:0000576!7.57e-49!63;CL:0000040!7.57e-49!63;CL:0000559!7.57e-49!63;CL:0000738!4.78e-46!140;CL:0000839!1.29e-45!70;CL:0000557!2.78e-45!71;CL:0002057!1.38e-44!42;CL:0000860!2.68e-40!45;CL:0002087!2.16e-38!119;CL:0002031!6.64e-37!124;CL:0002393!4.38e-11!9;CL:0002397!4.38e-11!9;CL:0000134!1.22e-09!358;CL:0000094!5.63e-09!8;CL:0002320!7.42e-09!365 | |ontology_enrichment_celltype=CL:0000763!1.67e-60!112;CL:0000049!1.67e-60!112;CL:0000037!2.44e-57!172;CL:0000566!2.44e-57!172;CL:0000766!1.34e-52!76;CL:0000988!9.24e-52!182;CL:0002032!1.12e-51!165;CL:0000837!1.12e-51!165;CL:0002009!1.99e-50!65;CL:0002194!7.57e-49!63;CL:0000576!7.57e-49!63;CL:0000040!7.57e-49!63;CL:0000559!7.57e-49!63;CL:0000738!4.78e-46!140;CL:0000839!1.29e-45!70;CL:0000557!2.78e-45!71;CL:0002057!1.38e-44!42;CL:0000860!2.68e-40!45;CL:0002087!2.16e-38!119;CL:0002031!6.64e-37!124;CL:0002393!4.38e-11!9;CL:0002397!4.38e-11!9;CL:0000134!1.22e-09!358;CL:0000094!5.63e-09!8;CL:0002320!7.42e-09!365 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.14e-48;33!CL:0002057;2.14e-48;33!CL:0000473;8.32e-47;39!CL:0000234;8.32e-47;39!CL:0000576;1.39e-45;48!CL:0000766;1.98e-35;69!CL:0000763;1.59e-26;100!CL:0000738;3.35e-13;136!CL:0000094;4.49e-13;8!CL:0002087;6.99e-13;104!CL:0002393;3.51e-11;6!CL:0002397;3.51e-11;6!CL:0000988;3.84e-11;177!CL:0000235;4.36e-09;6!CL:0000081;5.25e-09;11!CL:0000840;9.10e-08;5!CL:0000451;5.66e-07;10!CL:0000875;7.66e-07;3!CL:0002396;7.66e-07;3 | |ontology_enrichment_celltype_v019=CL:0000860;2.14e-48;33!CL:0002057;2.14e-48;33!CL:0000473;8.32e-47;39!CL:0000234;8.32e-47;39!CL:0000576;1.39e-45;48!CL:0000766;1.98e-35;69!CL:0000763;1.59e-26;100!CL:0000738;3.35e-13;136!CL:0000094;4.49e-13;8!CL:0002087;6.99e-13;104!CL:0002393;3.51e-11;6!CL:0002397;3.51e-11;6!CL:0000988;3.84e-11;177!CL:0000235;4.36e-09;6!CL:0000081;5.25e-09;11!CL:0000840;9.10e-08;5!CL:0000451;5.66e-07;10!CL:0000875;7.66e-07;3!CL:0002396;7.66e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.38e-87,108;CL:0000049,1.38e-87,108;CL:0000766,2.22e-86,72;CL:0002009,3.81e-84,61;CL:0002194,1.10e-81,59;CL:0000576,1.10e-81,59;CL:0000040,1.10e-81,59;CL:0000559,1.10e-81,59;CL:0000473,1.12e-76,48;CL:0000234,1.12e-76,48;CL:0000557,6.53e-75,67;CL:0000839,4.59e-71,66;CL:0000860,1.07e-68,42;CL:0002057,1.07e-68,42;CL:0000037,8.73e-68,168;CL:0000988,6.23e-63,177;CL:0002032,4.72e-61,161;CL:0000837,4.72e-61,161;CL:0000738,2.62e-57,136;CL:0002087,3.68e-48,115;CL:0002031,3.20e-43,120;CL:0000134,1.12e-18,354;CL:0002320,8.19e-18,361;CL:0002393,2.30e-16,9;CL:0002397,2.30e-16,9;CL:0000219,8.62e-15,386;CL:0000094,4.36e-13,8;CL:0000034,1.50e-11,441;CL:0000048,3.57e-11,427;CL:0000723,1.10e-10,433;CL:0000235,4.08e-09,6;CL:0000081,5.14e-09,11;CL:0000840,6.90e-08,5;CL:0001029,6.90e-08,5;CL:0000451,4.79e-07,10;CL:0000875,7.66e-07,3;CL:0002396,7.66e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;6.84e-49;42!CL:0000049;4.25e-23;108 | |ontology_enrichment_development_v019=CL:0002057;6.84e-49;42!CL:0000049;4.25e-23;108 | ||
|ontology_enrichment_disease=DOID:8692!8.74e-11!31;DOID:1240!5.46e-08!39 | |ontology_enrichment_disease=DOID:8692!8.74e-11!31;DOID:1240!5.46e-08!39 | ||
|ontology_enrichment_disease_v019=DOID:8692;1.27e-11;31!DOID:1240;9.10e-08;39 | |ontology_enrichment_disease_v019=DOID:8692;1.27e-11;31!DOID:1240;9.10e-08;39 | ||
|ontology_enrichment_disease_v019_2=DOID:8692,2.82e-12,31;DOID:1240,7.94e-10,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.16e-47!102;UBERON:0003061!1.16e-47!102;UBERON:0002193!3.74e-43!112;UBERON:0002371!6.60e-39!80;UBERON:0001474!1.94e-34!86;UBERON:0002405!1.48e-29!115;UBERON:0004765!1.78e-27!101;UBERON:0001434!1.78e-27!101;UBERON:0007023!4.67e-26!115;UBERON:0003081!3.35e-12!216;UBERON:0001049!2.59e-10!57;UBERON:0005068!2.59e-10!57;UBERON:0006241!2.59e-10!57;UBERON:0007135!2.59e-10!57;UBERON:0002204!6.38e-10!167;UBERON:0000178!9.78e-09!15;UBERON:0000179!9.78e-09!15;UBERON:0000463!9.78e-09!15;UBERON:0002780!2.15e-08!41;UBERON:0001890!2.15e-08!41;UBERON:0006240!2.15e-08!41;UBERON:0002384!3.75e-08!375;UBERON:0002020!4.55e-08!34;UBERON:0003528!4.55e-08!34;UBERON:0001893!4.80e-08!34;UBERON:0003080!5.07e-08!42;UBERON:0002791!1.06e-07!33;UBERON:0002616!1.62e-07!59;UBERON:0001869!4.20e-07!32 | |ontology_enrichment_uberon=UBERON:0002390!1.16e-47!102;UBERON:0003061!1.16e-47!102;UBERON:0002193!3.74e-43!112;UBERON:0002371!6.60e-39!80;UBERON:0001474!1.94e-34!86;UBERON:0002405!1.48e-29!115;UBERON:0004765!1.78e-27!101;UBERON:0001434!1.78e-27!101;UBERON:0007023!4.67e-26!115;UBERON:0003081!3.35e-12!216;UBERON:0001049!2.59e-10!57;UBERON:0005068!2.59e-10!57;UBERON:0006241!2.59e-10!57;UBERON:0007135!2.59e-10!57;UBERON:0002204!6.38e-10!167;UBERON:0000178!9.78e-09!15;UBERON:0000179!9.78e-09!15;UBERON:0000463!9.78e-09!15;UBERON:0002780!2.15e-08!41;UBERON:0001890!2.15e-08!41;UBERON:0006240!2.15e-08!41;UBERON:0002384!3.75e-08!375;UBERON:0002020!4.55e-08!34;UBERON:0003528!4.55e-08!34;UBERON:0001893!4.80e-08!34;UBERON:0003080!5.07e-08!42;UBERON:0002791!1.06e-07!33;UBERON:0002616!1.62e-07!59;UBERON:0001869!4.20e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.49e-13;15!UBERON:0000179;1.49e-13;15!UBERON:0000463;1.49e-13;15!UBERON:0002390;2.07e-08;32 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.49e-13;15!UBERON:0000179;1.49e-13;15!UBERON:0000463;1.49e-13;15!UBERON:0002390;2.07e-08;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.42e-79,98;UBERON:0003061,2.42e-79,98;UBERON:0002193,6.64e-72,108;UBERON:0002371,4.15e-66,76;UBERON:0001474,7.51e-60,82;UBERON:0002405,3.71e-58,93;UBERON:0004765,8.34e-53,90;UBERON:0001434,1.37e-45,100;UBERON:0003081,2.18e-27,203;UBERON:0002204,1.17e-20,167;UBERON:0002384,1.23e-16,371;UBERON:0000178,1.61e-13,15;UBERON:0000179,1.61e-13,15;UBERON:0000463,1.61e-13,15;UBERON:0000926,3.40e-11,315;UBERON:0004120,3.40e-11,315;UBERON:0006603,3.40e-11,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.236132343941038,82.2131338614209,26.1003990706105,37.4655018424904,0,0,0,0.0774672005803016,0,3.81680571135301,26.5917796095301,19.6533558520739,18.0119022694157,2.01523926815932,0.32389366601898,2.31818010870768,26.4624794578808,21.1610528465733,22.3177336292791,27.1941973179651,19.3248907370258,28.1832797514544,35.9615490402688,26.3845527724974,44.9316236788312,23.0979606093534,9.68227025375739,23.0225027210381,28.2363509313907,18.8305243539914,36.1804809956586,36.4239831921374,21.8231738411744,26.2128221577607,22.4298884126967,25.9302754908121,24.2948107803636,31.3425977718871,10.7803192691317,21.7987787148451,33.9185698096603,19.8163508999677,43.8721466304336,28.4537766237683,25.411156883142,31.6462387440884,168.58171847693,176.674173270951,153.470128512131,51.7834989585342,40.0972303886822,29.0913311921715,372.511656069812,331.793017568082,293.541295099767,0,0,0,2.13365111283254,0.400395987036012,0.574752439954483,0.661044872784862,1.90810750907073,0,0.587237189370939,0,1.32171328579026,3.92355994087075,6.58460211937693,0,0,0,0.167186495390678,0,0,1.94826728407911,0.111410456885174,0,0,0,0,0,1.15106533222573,0,0.869409257205157,0.14828656316206,0,0,0.339928028092699,0,0,0,0.95569624297229,0,0,1.6563263098555,0.76791966692651,4.99722906209383,3.31488152861624,0.821127996921047,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.589405839739707,0,0,1.62273696827342,1.91542711029194,2.39324328933957,2.8618874916641,5.71994910780128,4.08603251462521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.495845917967,15.511210565933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94848165003288,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.90920814609754,4.91408956792399,6.53977114070404,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.72990245129524,8.53837055434615,6.32501818449095,0,0,0,0,0,0,0,0.591092280605782,0.215627574859517,1.54011643535698,0,0,0,0.167516265334349,0,11.2351053592077,5.9832291840805,5.8018171881045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.7482101159539,21.5714200818617,9.71220776011343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.657779629937804,0.261435451024901,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.188287601553558,0,0,0,0,9.13405696617905,5.35246044999663,12.5322381178316,10.0057345692271,11.1067813733272,11.0240462902762,6.48037724685738,9.51750211553125,0,0,0,0,0,0,0,4.7899049143876,10.9158060975449,7.83192256078367,0,0.561594356226918,5.02116293873023,3.76031749855256,2.50634477090067,4.06300266723848,6.42352300414798,3.63239472943886,8.94277099149685,1.71752672377882,4.91585222893533,4.92087437363315,6.00656910162871,10.5509571517102,0,0,1.6227340708559,0.33307196799782,1.4098700508785,0,0.73254089635947,0,0,0,0,0.593929361665277,0,0.994147647766298,1.26602474769461,0,0,0,0,0.552567831062295,0,0,0,0,0,0,6.13886844272246,0.197286811273867,16.7638164642858,0,0.969332746095218,1.39152147242777,0,0,0,0,0,0,0,0,0,0,0,0.723578631752448,0,0.110579259931225,0.591095237907095,0,0,0,0.153900517007594,0,0,0,0,0,0,0,2.04386596391473,0.627921025580099,1.32969345520125,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,1.21322039365219,0,0.702793337176017,0,0,0,0,0,0,2.40109002588254,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0,0,0,0.50648636764703,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,1.9166753044879,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.953423842781029,0,0,0,2.69968669861801,4.6428117273477,0.303747783290123,0,0.551639951094387,0.262272940674991,0,0,0,2.85878130549347,0,0,0,0,0,0,0.82092520749339,0,0,0.879313402068495,2.65013777824443,0.646414781807753,0.66116300871345,0,0,2.99004755189545,0.314408610199332,1.24271716604159,3.47316215268366,0,0,0,0.544017803369474,0,0,0,0,0.886068179966986,0.244052529803926,0.625954653532499,0,1.66393577305278,1.42821726765182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0.163565394255844,0,0,0,0.19998739585493,10.7758646991082,0,0,0,0,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,1.27707087245721,0.205116364240755,0,0.207471757392654,0.322951291263702,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.337687923091973,1.56215619722769,0.620060389503552,0.126831620387814,0,0.548257766857182,0,0,0,0,0.336283722218824,0,0.682986574053893,0.79832133146375,0.115233987555779,0,0.747667062745149,0.526182188502793,0,0,0.156986185701028,0.314231179832004,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,1.15981443133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| ||
|short_description=p5@LST1 | |short_description=p5@LST1 | ||
}} | }} |
Latest revision as of 22:05, 17 September 2015
Short description: | p5@LST1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LST1_5end |
Coexpression cluster: | C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole |
Association with transcript: | 0bp_to_ENST00000376086, ENST00000376092, ENST00000376093, ENST00000376102, NM_001166538, NM_007161, NM_205840, uc003nus.2, uc003nut.2, uc003nuu.2, uc010jst.1, uc010jsu.1, uc010jsx.2_5end |
EntrezGene: | LST1 |
HGNC: | 14189 |
UniProt: | Q5STA5Q5SP24O00453Q2HNT3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.42e-79 | 98 |
blood island | 2.42e-79 | 98 |
hemolymphoid system | 6.64e-72 | 108 |
bone marrow | 4.15e-66 | 76 |
bone element | 7.51e-60 | 82 |
immune system | 3.71e-58 | 93 |
skeletal element | 8.34e-53 | 90 |
skeletal system | 1.37e-45 | 100 |
lateral plate mesoderm | 2.18e-27 | 203 |
musculoskeletal system | 1.17e-20 | 167 |
connective tissue | 1.23e-16 | 371 |
blood | 1.61e-13 | 15 |
haemolymphatic fluid | 1.61e-13 | 15 |
organism substance | 1.61e-13 | 15 |
mesoderm | 3.40e-11 | 315 |
mesoderm-derived structure | 3.40e-11 | 315 |
presumptive mesoderm | 3.40e-11 | 315 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.82e-12 | 31 |
leukemia | 7.94e-10 | 39 |