FFCP PHASE1:Hg19::chr1:36948505..36948540,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1441 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2439 | |||
|TSSclassifier=strong | |||
|UniProt=Q99062 | |||
|association_with_transcript=0bp_to_ENST00000489551,uc001cav.1,uc001caw.1,uc001cax.1,uc001cay.1_5end | |||
|cluster_id=chr1:36948505..36948540,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_CSF3R_5end | |||
|id=chr1:36948505..36948540,- | |||
|ontology_enrichment_celltype=CL:0000766!3.75e-38!76;CL:0000763!9.48e-37!112;CL:0000049!9.48e-37!112;CL:0002194!4.34e-36!63;CL:0000576!4.34e-36!63;CL:0000040!4.34e-36!63;CL:0000559!4.34e-36!63;CL:0002009!3.85e-34!65;CL:0000037!1.15e-33!172;CL:0000566!1.15e-33!172;CL:0002057!1.19e-33!42;CL:0000839!1.19e-31!70;CL:0002032!7.95e-31!165;CL:0000837!7.95e-31!165;CL:0000557!1.59e-30!71;CL:0000860!5.75e-30!45;CL:0000988!2.54e-29!182;CL:0000738!3.15e-28!140;CL:0002087!2.67e-27!119;CL:0002031!5.39e-23!124;CL:0000094!3.03e-08!8;CL:0002393!3.55e-07!9;CL:0002397!3.55e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.77e-29;33!CL:0002057;3.77e-29;33!CL:0000473;5.29e-28;39!CL:0000234;5.29e-28;39!CL:0000576;3.23e-27;48!CL:0000766;1.23e-20;69!CL:0000763;4.50e-15;100!CL:0002087;1.48e-09;104!CL:0000094;2.73e-09;8!CL:0000738;2.85e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.99e-49,72;CL:0002194,8.99e-47,59;CL:0000576,8.99e-47,59;CL:0000040,8.99e-47,59;CL:0000559,8.99e-47,59;CL:0002009,1.98e-44,61;CL:0000763,3.70e-44,108;CL:0000049,3.70e-44,108;CL:0000473,4.63e-43,48;CL:0000234,4.63e-43,48;CL:0000557,4.27e-40,67;CL:0000839,3.25e-39,66;CL:0000860,1.11e-38,42;CL:0002057,1.11e-38,42;CL:0000037,2.46e-37,168;CL:0002032,5.18e-34,161;CL:0000837,5.18e-34,161;CL:0000988,1.85e-33,177;CL:0000738,4.72e-33,136;CL:0002087,3.28e-31,115;CL:0002031,2.78e-25,120;CL:0000094,2.74e-09,8;CL:0002393,4.69e-08,9;CL:0002397,4.69e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;6.47e-28;42!CL:0000049;8.60e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.95e-39!115;UBERON:0002390!1.33e-32!102;UBERON:0003061!1.33e-32!102;UBERON:0002193!1.07e-28!112;UBERON:0002371!2.02e-25!80;UBERON:0002405!1.14e-22!115;UBERON:0001474!7.59e-22!86;UBERON:0004765!2.35e-17!101;UBERON:0001434!2.35e-17!101;UBERON:0001049!1.02e-12!57;UBERON:0005068!1.02e-12!57;UBERON:0006241!1.02e-12!57;UBERON:0007135!1.02e-12!57;UBERON:0003080!1.25e-10!42;UBERON:0002780!2.99e-10!41;UBERON:0001890!2.99e-10!41;UBERON:0006240!2.99e-10!41;UBERON:0002616!1.95e-09!59;UBERON:0002020!2.04e-08!34;UBERON:0003528!2.04e-08!34;UBERON:0001893!2.38e-08!34;UBERON:0003081!2.62e-08!216;UBERON:0000178!4.10e-08!15;UBERON:0000179!4.10e-08!15;UBERON:0000463!4.10e-08!15;UBERON:0001017!4.42e-08!82;UBERON:0000955!4.82e-08!69;UBERON:0006238!4.82e-08!69;UBERON:0002791!4.88e-08!33;UBERON:0005743!1.36e-07!86;UBERON:0001869!1.94e-07!32;UBERON:0003075!2.36e-07!86;UBERON:0007284!2.36e-07!86;UBERON:0000073!5.56e-07!94;UBERON:0001016!5.56e-07!94;UBERON:0002346!7.21e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.82e-09;15!UBERON:0000179;1.82e-09;15!UBERON:0000463;1.82e-09;15!UBERON:0007023;5.70e-09;114!UBERON:0002780;1.06e-07;41!UBERON:0001890;1.06e-07;41!UBERON:0001893;1.17e-07;34!UBERON:0003528;4.02e-07;34!UBERON:0002020;4.02e-07;34!UBERON:0002791;5.42e-07;32!UBERON:0002619;6.52e-07;22!UBERON:0001869;7.74e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.96e-43,98;UBERON:0003061,5.96e-43,98;UBERON:0002193,1.89e-38,108;UBERON:0007023,1.55e-35,114;UBERON:0002371,5.07e-34,76;UBERON:0002405,6.34e-30,93;UBERON:0001474,9.27e-30,82;UBERON:0004765,5.08e-25,90;UBERON:0001434,4.39e-21,100;UBERON:0003081,4.45e-14,203;UBERON:0001049,3.62e-12,56;UBERON:0005068,3.62e-12,56;UBERON:0006241,3.62e-12,56;UBERON:0007135,3.62e-12,56;UBERON:0000073,7.30e-11,53;UBERON:0002616,7.30e-11,53;UBERON:0002780,4.50e-10,41;UBERON:0001890,4.50e-10,41;UBERON:0003080,4.50e-10,41;UBERON:0006240,4.50e-10,41;UBERON:0000178,1.83e-09,15;UBERON:0000179,1.83e-09,15;UBERON:0000463,1.83e-09,15;UBERON:0003528,1.29e-08,34;UBERON:0002020,1.29e-08,34;UBERON:0001893,1.52e-08,34;UBERON:0002791,1.06e-07,32;UBERON:0000955,1.30e-07,68;UBERON:0006238,1.30e-07,68;UBERON:0001869,1.57e-07,32;UBERON:0001017,2.86e-07,81;UBERON:0003075,4.10e-07,82;UBERON:0007284,4.10e-07,82;UBERON:0002619,6.91e-07,22 | |||
|phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0.331397375727916,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,101.094619150168,73.6952444346648,132.832233805193,0,0,0,0,0,78.6849177417391,203.870310339731,263.515403975766,189.450490134939,30.6764199708696,39.5150272543155,51.5151135268373,155.139920777796,133.012332178461,147.73369326338,166.884048498282,145.142264471704,164.4540829453,195.630826779062,173.420798320201,189.185783910868,229.600623370588,189.772496973645,165.220313645097,185.606946789008,136.998887329039,123.822639929242,221.910821968904,201.543429003787,198.194508997703,158.988326689997,167.549472402171,164.096528955087,272.216265833612,211.067303585104,201.171586425571,191.953980256152,197.642026081256,215.885711636886,205.835830895345,265.159897911047,214.245036297479,29.9982506562957,27.2133503955256,38.5771907735412,154.78885371987,130.503719879269,200.424806611259,4.56020389985998,5.37075028437543,8.03722276564389,1.75996244461323,7.09980194640771,1.77901850772711,12.8019066769952,0.800791974072025,4.59801951963587,7.93253847341835,3.81621501814146,1.70763890732835,4.69789751496751,1.91136614062614,35.686258716337,53.2483134832459,51.0965124463649,0.196709770113833,0.393010762749165,0.616804496998528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91139248594458,0.651083453856419,0,9.63680762097746,5.63141089079441,18.7396089828519,17.5215166512572,2.46338399076314,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.263504357079378,7.33482822787191,0,0,3.24547393654683,3.48259474598534,3.45690697349049,5.96226560763355,4.0039643754609,2.60020250930695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2007.01575755124,2466.28247998335,0,0,0,0,0,1.41867352879343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0.161646056818812,0,0,0,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,1.26755034821831,0.982827216677626,1.77236972004421,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.1746625235162,13.806251643215,20.5111003958445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,2.17048642156577,0,0,0.355391948742546,0,0,0,0,42.5683232244167,34.1534822173846,18.9750545534728,0,0,0,0,0,0,0,7.09310736726938,0.862510299438069,6.16046574142792,0,0,0,0.670065061337395,0,1676.27771959379,1585.55573378133,1924.54564439695,0.36807447515742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,52.9326146874592,92.1099637495494,62.1154386416046,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0,0,0.229628896329213,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.784306353074702,0,0,0,154.25239443664,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0,0,0,0,1.95053495635836,0,0,0,0,0,0,0,0,0,0,0,1.8589409885985,0,0,0,0,0,0.844430541190656,0,0,0,0,2.01090682660736,0,154.207545672364,0,1.68471475667626,0,0,565.296636684637,562.008347249646,573.065070297208,300.64850062773,314.280776637852,658.848884171801,490.888576449446,482.220107186916,0,0,0,0,0,0,0,21.5545721147442,2.68107518185313,6.98522822988813,120.110117901586,44.6467513200399,9.81409119842727,7.36395510133209,100.253790836027,0,3.21176150207399,13.7223800889912,47.2689323836262,33.3200184413092,19.6634089157413,17.8940886313933,17.0186124546147,18.7572571585959,0,0,0,2.33150377598474,0,0,6.59286806723523,0,0,0,1.67121139316383,4.75143489332222,0,1.9882952955326,7.31480965334666,0.111308705022906,0,0,3.98495976502139,1.38141957765574,0,0,0,0,0,0,12.7893092556718,4.04437963111428,184.401981107144,0,3.87733098438087,3.4324196319885,1.99613798001194,0,0.0874599999961957,4.34999745260876,0,0,0,0,0,0,7.08593108651071,3.61789315876224,0,1.43753037910592,0.886642856860642,1.09692698576986,0,0,2.07765697960252,0,148.944282234687,67.3182333073291,19.9911164336495,4.14701507651495,1.37396390102793,7.99552164027952,0,1.09886179476517,0.664846727600626,0,0,0,0,0.158936578980379,0,0,0,0,0,2.38835424159016,1.22206028986725,0,0,0,8.76214728748802,1.60515529459758,3.74823113160543,0,0,0,1.18375320854817,1.20990716048664,1.22429104652196,14.9120327923232,0,0,0,0,0,0,0,0,0,0,0,1.92199335066233,0,0,0,0,2.23074737923365,0,1.12990370390266,0,0,1.7727022867646,0,0,2.34798294213288,0,0,0,0.171594997861965,0,0,18.6198287347268,0,0,0,0,0.600420288709789,8.07741735462759,144.353644515679,0,0,2.23425921017803,1.3749625440701,2.15361907373044,2.39614800598789,4.29226048136571,14.059801818838,4.16537529417703,0,11.6495949527454,3.38767683921062,3.70871362715249,4.85305515750131,0.0984274815147488,0,7.15706720828373,6.81017030557878,0.160753148465019,0,0,0,0,2.36923270966296,0,1.26089131678717,2.7800931711549,0,0,0,4.2881719582402,3.97255182219259,0,0,0,0,0,0,0,0.226624183040251,3.51725360827398,55.652893343133,4.91275234173892,7.53725829933333,0,0,47.9475482428949,38.9866676647172,24.0258652101373,57.5552585301863,0,0,0,0,0,0,0,0,0,1.95242023843141,4.63206443614049,2.2936367827602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| |||
|short_description=p1@CSF3R | |||
}} |
Latest revision as of 21:29, 17 September 2015
Short description: | p1@CSF3R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CSF3R_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000489551, uc001cav.1, uc001caw.1, uc001cax.1, uc001cay.1_5end |
EntrezGene: | CSF3R |
HGNC: | 2439 |
UniProt: | Q99062 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.99e-49 | 72 |
monopoietic cell | 8.99e-47 | 59 |
monocyte | 8.99e-47 | 59 |
monoblast | 8.99e-47 | 59 |
promonocyte | 8.99e-47 | 59 |
macrophage dendritic cell progenitor | 1.98e-44 | 61 |
myeloid cell | 3.70e-44 | 108 |
common myeloid progenitor | 3.70e-44 | 108 |
defensive cell | 4.63e-43 | 48 |
phagocyte | 4.63e-43 | 48 |
granulocyte monocyte progenitor cell | 4.27e-40 | 67 |
myeloid lineage restricted progenitor cell | 3.25e-39 | 66 |
classical monocyte | 1.11e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.11e-38 | 42 |
hematopoietic stem cell | 2.46e-37 | 168 |
hematopoietic oligopotent progenitor cell | 5.18e-34 | 161 |
hematopoietic multipotent progenitor cell | 5.18e-34 | 161 |
hematopoietic cell | 1.85e-33 | 177 |
leukocyte | 4.72e-33 | 136 |
nongranular leukocyte | 3.28e-31 | 115 |
hematopoietic lineage restricted progenitor cell | 2.78e-25 | 120 |
granulocyte | 2.74e-09 | 8 |
intermediate monocyte | 4.69e-08 | 9 |
CD14-positive, CD16-positive monocyte | 4.69e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.96e-43 | 98 |
blood island | 5.96e-43 | 98 |
hemolymphoid system | 1.89e-38 | 108 |
adult organism | 1.55e-35 | 114 |
bone marrow | 5.07e-34 | 76 |
immune system | 6.34e-30 | 93 |
bone element | 9.27e-30 | 82 |
skeletal element | 5.08e-25 | 90 |
skeletal system | 4.39e-21 | 100 |
lateral plate mesoderm | 4.45e-14 | 203 |
neural tube | 3.62e-12 | 56 |
neural rod | 3.62e-12 | 56 |
future spinal cord | 3.62e-12 | 56 |
neural keel | 3.62e-12 | 56 |
regional part of nervous system | 7.30e-11 | 53 |
regional part of brain | 7.30e-11 | 53 |
regional part of forebrain | 4.50e-10 | 41 |
forebrain | 4.50e-10 | 41 |
anterior neural tube | 4.50e-10 | 41 |
future forebrain | 4.50e-10 | 41 |
blood | 1.83e-09 | 15 |
haemolymphatic fluid | 1.83e-09 | 15 |
organism substance | 1.83e-09 | 15 |
brain grey matter | 1.29e-08 | 34 |
gray matter | 1.29e-08 | 34 |
telencephalon | 1.52e-08 | 34 |
regional part of telencephalon | 1.06e-07 | 32 |
brain | 1.30e-07 | 68 |
future brain | 1.30e-07 | 68 |
cerebral hemisphere | 1.57e-07 | 32 |
central nervous system | 2.86e-07 | 81 |
neural plate | 4.10e-07 | 82 |
presumptive neural plate | 4.10e-07 | 82 |
regional part of cerebral cortex | 6.91e-07 | 22 |