FFCP PHASE1:Hg19::chr8:28748099..28748141,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79618 | |EntrezGene=79618 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26137 | |HGNC=26137 | ||
|TSSclassifier=strong | |||
|UniProt=E5RGZ2 | |UniProt=E5RGZ2 | ||
|association_with_transcript=0bp_to_ENST00000519047,ENST00000521516_5end | |association_with_transcript=0bp_to_ENST00000519047,ENST00000521516_5end | ||
|cluster_id=chr8:28748099..28748141,+ | |||
|description=CAGE_peak_2_at_HMBOX1_5end | |description=CAGE_peak_2_at_HMBOX1_5end | ||
|id=chr8:28748099..28748141,+ | |id=chr8:28748099..28748141,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype=CL:0000037!4.77e-08!172;CL:0000566!4.77e-08!172;CL:0000988!9.62e-08!182;CL:0002032!8.16e-07!165;CL:0000837!8.16e-07!165 | ||
| | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_disease=DOID:8692;3.72e-10;31!DOID:1240;1.44e-08;39!DOID:2531;5.24e-07;51!DOID:0060083;5.24e-07;51 | |ontology_enrichment_celltype_v019_2=CL:0000037,2.09e-08,168;CL:0000988,3.09e-08,177;CL:0002032,3.94e-07,161;CL:0000837,3.94e-07,161 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1240!2.27e-10!39;DOID:8692!2.57e-10!31;DOID:2531!2.83e-10!51;DOID:0060083!2.83e-10!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.72e-10;31!DOID:1240;1.44e-08;39!DOID:2531;5.24e-07;51!DOID:0060083;5.24e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,1.70e-10,39;DOID:8692,2.14e-10,31;DOID:2531,2.15e-10,51;DOID:0060083,2.15e-10,51 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.92e-12!94;UBERON:0001016!2.92e-12!94;UBERON:0001017!1.37e-11!82;UBERON:0005743!9.70e-11!86;UBERON:0001049!2.69e-10!57;UBERON:0005068!2.69e-10!57;UBERON:0006241!2.69e-10!57;UBERON:0007135!2.69e-10!57;UBERON:0002780!6.47e-09!41;UBERON:0001890!6.47e-09!41;UBERON:0006240!6.47e-09!41;UBERON:0002616!7.63e-09!59;UBERON:0003080!7.72e-09!42;UBERON:0007023!1.39e-08!115;UBERON:0002346!2.99e-08!90;UBERON:0000955!3.61e-08!69;UBERON:0006238!3.61e-08!69;UBERON:0002020!2.28e-07!34;UBERON:0003528!2.28e-07!34;UBERON:0002791!3.29e-07!33;UBERON:0001893!3.53e-07!34;UBERON:0003075!4.84e-07!86;UBERON:0007284!4.84e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.99e-13,89;UBERON:0001017,6.27e-12,81;UBERON:0001049,1.81e-10,56;UBERON:0005068,1.81e-10,56;UBERON:0006241,1.81e-10,56;UBERON:0007135,1.81e-10,56;UBERON:0000073,3.46e-09,53;UBERON:0002616,3.46e-09,53;UBERON:0002780,5.53e-09,41;UBERON:0001890,5.53e-09,41;UBERON:0003080,5.53e-09,41;UBERON:0006240,5.53e-09,41;UBERON:0002346,1.50e-08,86;UBERON:0007023,1.71e-08,114;UBERON:0000955,1.94e-08,68;UBERON:0006238,1.94e-08,68;UBERON:0003528,2.01e-07,34;UBERON:0002020,2.01e-07,34;UBERON:0003075,2.69e-07,82;UBERON:0007284,2.69e-07,82;UBERON:0001893,3.14e-07,34;UBERON:0002791,7.03e-07,32 | |||
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| ||
|short_description=p2@HMBOX1 | |short_description=p2@HMBOX1 | ||
}} | }} |
Latest revision as of 21:02, 17 September 2015
Short description: | p2@HMBOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMBOX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000519047, ENST00000521516_5end |
EntrezGene: | HMBOX1 |
HGNC: | 26137 |
UniProt: | E5RGZ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.09e-08 | 168 |
hematopoietic cell | 3.09e-08 | 177 |
hematopoietic oligopotent progenitor cell | 3.94e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.94e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.99e-13 | 89 |
central nervous system | 6.27e-12 | 81 |
neural tube | 1.81e-10 | 56 |
neural rod | 1.81e-10 | 56 |
future spinal cord | 1.81e-10 | 56 |
neural keel | 1.81e-10 | 56 |
regional part of nervous system | 3.46e-09 | 53 |
regional part of brain | 3.46e-09 | 53 |
regional part of forebrain | 5.53e-09 | 41 |
forebrain | 5.53e-09 | 41 |
anterior neural tube | 5.53e-09 | 41 |
future forebrain | 5.53e-09 | 41 |
neurectoderm | 1.50e-08 | 86 |
adult organism | 1.71e-08 | 114 |
brain | 1.94e-08 | 68 |
future brain | 1.94e-08 | 68 |
brain grey matter | 2.01e-07 | 34 |
gray matter | 2.01e-07 | 34 |
neural plate | 2.69e-07 | 82 |
presumptive neural plate | 2.69e-07 | 82 |
telencephalon | 3.14e-07 | 34 |
regional part of telencephalon | 7.03e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
leukemia | 1.70e-10 | 39 |
myeloid leukemia | 2.14e-10 | 31 |
hematologic cancer | 2.15e-10 | 51 |
immune system cancer | 2.15e-10 | 51 |