FFCP PHASE1:Hg19::chr4:41750860..41750867,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8929 | |EntrezGene=8929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9143 | |HGNC=9143 | ||
|TSSclassifier=strong | |||
|UniProt=Q99453 | |UniProt=Q99453 | ||
|association_with_transcript=119bp_to_ENST00000226382,NM_003924,uc003gwf.3_5end | |association_with_transcript=119bp_to_ENST00000226382,NM_003924,uc003gwf.3_5end | ||
|cluster_id=chr4:41750860..41750867,- | |||
|coexpression_cluster_id=C1368 | |||
|description=CAGE_peak_8_at_PHOX2B_5end | |description=CAGE_peak_8_at_PHOX2B_5end | ||
|id=chr4:41750860..41750867,- | |id=chr4:41750860..41750867,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000333;5.92e-105;5!CL:0002321;1.31e-35;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,6.92e-13,41;CL:0000133,3.00e-09,59;CL:0000221,1.04e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000221;1.07e-07;72 | |||
|ontology_enrichment_disease=DOID:169!2.50e-36!6;DOID:171!5.74e-22!10;DOID:3095!3.82e-10!22;DOID:2994!3.82e-10!22 | |||
|ontology_enrichment_disease_v019=DOID:169;1.22e-87;6!DOID:171;5.64e-53;10!DOID:3095;1.56e-24;22!DOID:2994;1.56e-24;22!DOID:5409;1.38e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.10e-87,6;DOID:171,5.27e-53,10;DOID:3095,1.51e-24,22;DOID:2994,1.51e-24,22;DOID:5409,1.44e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0000013!1.71e-43!5;UBERON:0002410!1.71e-43!5;UBERON:0000988!2.17e-39!3;UBERON:0002148!5.34e-27!2;UBERON:0009662!5.34e-27!2;UBERON:0002298!3.13e-26!8;UBERON:0000010!2.30e-24!8;UBERON:0006331!2.32e-18!3;UBERON:0004733!1.28e-17!12;UBERON:0002028!1.28e-17!12;UBERON:0007277!1.28e-17!12;UBERON:0004732!2.72e-16!13;UBERON:0002135!1.23e-14!1;UBERON:0003076!3.65e-14!15;UBERON:0003057!3.65e-14!15;UBERON:0002680!1.30e-13!9;UBERON:0001895!1.30e-13!9;UBERON:0010092!1.30e-13!9;UBERON:0000073!5.41e-08!94;UBERON:0001016!5.41e-08!94;UBERON:0002133!5.74e-08!2;UBERON:0000160!7.69e-08!27;UBERON:0002308!9.93e-07!9;UBERON:0000125!9.93e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;5.92e-105;5!UBERON:0002410;5.92e-105;5!UBERON:0000010;9.32e-59;8!UBERON:0001052;1.57e-09;4!UBERON:0004907;7.01e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,5.18e-105,5;UBERON:0002410,5.18e-105,5;UBERON:0000010,8.65e-59,8;UBERON:0001052,1.57e-09,4;UBERON:0004907,7.01e-08,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24366922344972,2.47997066212368,4.560712313821,9.17360960812917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,3.65263488203798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.28768015307174,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24366922344972,2.47997066212368,4.560712313821,9.17360960812917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,3.65263488203798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.28768015307174,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@PHOX2B | |short_description=p8@PHOX2B | ||
}} | }} |
Latest revision as of 19:56, 17 September 2015
Short description: | p8@PHOX2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PHOX2B_5end |
Coexpression cluster: | C1368_neuroblastoma_rectum_small_colon_locus_duodenum_temporal |
Association with transcript: | 119bp_to_ENST00000226382, NM_003924, uc003gwf.3_5end |
EntrezGene: | PHOX2B |
HGNC: | 9143 |
UniProt: | Q99453 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 6.92e-13 | 41 |
neurectodermal cell | 3.00e-09 | 59 |
ectodermal cell | 1.04e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 5.18e-105 | 5 |
autonomic nervous system | 5.18e-105 | 5 |
peripheral nervous system | 8.65e-59 | 8 |
rectum | 1.57e-09 | 4 |
lower digestive tract | 7.01e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.10e-87 | 6 |
neuroectodermal tumor | 5.27e-53 | 10 |
germ cell and embryonal cancer | 1.51e-24 | 22 |
germ cell cancer | 1.51e-24 | 22 |
lung small cell carcinoma | 1.44e-09 | 4 |