FFCP PHASE1:Hg19::chr21:17566560..17566576,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr21:17566560..17566576,+
|short_description=p20@LINC00478
|description=CAGE_peak_20_at_LINC00478_5end
|association_with_transcript=-122bp_to_ENST00000419952,N...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=388815 | |EntrezGene=388815 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=1274 | |HGNC=1274 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-122bp_to_ENST00000419952,NR_027791,uc002ykc.2_5end | |||
|cluster_id=chr21:17566560..17566576,+ | |||
|description=CAGE_peak_20_at_LINC00478_5end | |||
|id=chr21:17566560..17566576,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000594;1.82e-08;3!CL:0002605;3.12e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000594,1.49e-08,3;CL:0002605,1.86e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006298;8.72e-07;1!UBERON:0006242;8.72e-07;1!UBERON:0004874;8.72e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.79e-15!82;UBERON:0005743!8.51e-15!86;UBERON:0007023!1.82e-14!115;UBERON:0001049!7.79e-14!57;UBERON:0005068!7.79e-14!57;UBERON:0006241!7.79e-14!57;UBERON:0007135!7.79e-14!57;UBERON:0000955!2.34e-13!69;UBERON:0006238!2.34e-13!69;UBERON:0003075!2.40e-13!86;UBERON:0007284!2.40e-13!86;UBERON:0002616!3.12e-13!59;UBERON:0000073!8.97e-13!94;UBERON:0001016!8.97e-13!94;UBERON:0000033!2.72e-12!123;UBERON:0002346!3.99e-12!90;UBERON:0002780!5.00e-11!41;UBERON:0001890!5.00e-11!41;UBERON:0006240!5.00e-11!41;UBERON:0000153!5.92e-11!129;UBERON:0007811!5.92e-11!129;UBERON:0003080!1.42e-10!42;UBERON:0001893!6.01e-10!34;UBERON:0002791!1.52e-09!33;UBERON:0002020!4.51e-09!34;UBERON:0003528!4.51e-09!34;UBERON:0003056!7.18e-09!61;UBERON:0001869!7.40e-09!32;UBERON:0004121!1.38e-08!169;UBERON:0000956!1.57e-08!25;UBERON:0000203!1.57e-08!25;UBERON:0000924!5.22e-08!173;UBERON:0006601!5.22e-08!173;UBERON:0000475!1.29e-07!365;UBERON:0001737!3.15e-07!9;UBERON:0000468!6.84e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;3.12e-08;3!UBERON:0004054;3.12e-08;3!UBERON:0005795;2.22e-07;1!UBERON:0006834;2.22e-07;1!UBERON:0007029;8.72e-07;1!UBERON:0001000;8.72e-07;1!UBERON:0000989;8.72e-07;1!UBERON:0001736;8.72e-07;1!UBERON:0002135;8.72e-07;1!UBERON:0001301;8.72e-07;1!UBERON:0008811;8.72e-07;1!UBERON:0002426;8.72e-07;1!UBERON:0003831;8.72e-07;1!UBERON:0003898;8.72e-07;1!UBERON:0004830;8.72e-07;1!UBERON:0003830;8.72e-07;1!UBERON:0005175;8.72e-07;1!UBERON:0001774;8.72e-07;1!UBERON:0001103;8.72e-07;1!UBERON:0005352;8.72e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,2.08e-08,3;UBERON:0004054,2.08e-08,3;UBERON:0006834,2.22e-07,1;UBERON:0001301,5.06e-07,1;UBERON:0002426,7.15e-07,1;UBERON:0003831,7.15e-07,1;UBERON:0003898,7.15e-07,1;UBERON:0004830,7.15e-07,1;UBERON:0003830,7.15e-07,1;UBERON:0005175,7.15e-07,1;UBERON:0001774,7.15e-07,1;UBERON:0001103,7.15e-07,1;UBERON:0010084,7.15e-07,1;UBERON:0001000,8.02e-07,1;UBERON:0005352,8.02e-07,1;UBERON:0000989,8.98e-07,1;UBERON:0008811,8.98e-07,1;UBERON:0006258,8.98e-07,1;UBERON:0005876,8.98e-07,1;UBERON:0004874,8.98e-07,1;UBERON:0007029,9.51e-07,1 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.492484232307152,0.408001382488506,0,1.71741592278634,0.547497700291537,1.88313959392204,0,0,0,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579386075843295,0,0,0.472674085820339,0,0.087834785693126,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.17859945656816,0.22452937262617,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0.454072282934794,1.15235184896,0.234321431833797,0,0,0,0,0,0.140450806702248,0,0,0.103325781175765,1.18800285728205,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0.515281080091258,0,0,0.0974370051611986,0,0.552299391853796,0.484938170456436,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0.828147600278907,0.842923450390509,0.241011029883482,0,0.871517776369625,0.71181185733329,0.539325232640658,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0.148631162288728,0.93733833986777,0.16798212819886,0.283550194484773,0,0,0,0,0.088048434013226,0,0.432359860250884,0.37872730027914,0,0,0,0,0,0,0,0.336393253036082,0,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0.335032530668698,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.434418072340414,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0.561320188866147,0.128139149255701,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0.200506470303285,0,0,0.364182336013434,0.262248829918848,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.0915694648183434,0.082509499920588,0,0,0,0,0.308097234229289,0.15350367472613,0.413509717453592,2.0409846524972,1.88521702088497,0.767039646744908,0.0890320356467374,0.330569830721956,0,0.255225424989168,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0,0,0.899362287916574,2.19629623788844,0.706874414074119,0,0,0,0.48763373908959,0.487426979262569,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,0,0.329294892959902,0,0.699869440489966,0,0,1.08890984861323,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0.557409525377156,0.28853842595289,0,0,0,0,0.846694330895531,0,0.280797178113459,0,0,2.50634477090067,0.338583555603207,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0,0,0.811367035427949,0,0,0,0.293016358543788,1.57768678274367,0,0,0,0,0,0,0.562677665642051,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,0,3.99227596002388,0,0,0,0.1137934482855,0,0,0,0,0,0,0.482385754501632,0,0.221158519862449,0,0.219385397153973,0,0,4.00141344219745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.269604531922708,1.60515529459758,0,0,0,0,1.57833761139756,0,0.91821828489147,0.568679216656392,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,1.92199335066233,0,3.19295893253981,2.63121541510268,3.36673373918158,0,0,0.225980740780532,0,0,0.316553979779393,0,0,1.06726497369676,0,0,0.229073192331831,0,0,0,0.235694034616795,0,0,0,0.577901179803038,0,0,0,0,0,1.11712960508902,0,0.717873024576814,0.199679000498991,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0,0,0.795229689809303,0.408610218334727,0,0,0,0,0,0.0607495566580247,0,0.394028536495991,0.0524545881349981,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0.244052529803926,0.1251909307065,0,0.554645257684261,0.124192805882767,2.62862406378839,0,0.151649117541648,0,0,0,0,0,0.701139929541673,0,0,1.25783950876288,0,0,0,0,0,0,0,0.155262956876259,0.829412415681711,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0,0.0642292250964595,1.41696576325585,0.319267718114302,0,0.504143392443436,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,2.48194083552549,0,0,0,0,0,0.135075169236789,0,0,0.19024743058172,2.18789923607288,0.548257766857182,1.48863353516788,0,0,0.535701835878287,0.672567444437648,0,1.59363533945908,0,0,0,0.135939465953663,0.0657727735628491,0,0,0.941917114206168,0.157115589916002,0,0.913158720509496,0,0,1.71543706023975,0,0.23248285073625,0,0,0,0,0,3.01159151174194,0,0,0.423387050190929,0,0,0,0.111855431797792,0,0,0,0,0,1.45713297917742,0,0,0.118920090777569,0,0,0,0,0.218559560503957,0,0,0,0.196308467114945,0.297046400327086,1.6906229103336,0.169927114687817,0,0,0,0,0,0,0,1.37618785021362,0.286679166302903,0.473314686579554,0,0,0,0,0.924351257262837,0.432626562123789,0,0,0.126698501011437,0,0,0,0,0.6820082839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| ||
|short_description=p20@LINC00478 | |||
}} | }} |
Latest revision as of 19:34, 17 September 2015
Short description: | p20@LINC00478 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_LINC00478_5end |
Coexpression cluster: | NA |
Association with transcript: | -122bp_to_ENST00000419952, NR_027791, uc002ykc.2_5end |
EntrezGene: | LINC00478 |
HGNC: | 1274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skeletal muscle satellite cell | 1.49e-08 | 3 |
astrocyte of the cerebral cortex | 1.86e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 2.08e-08 | 3 |
internal male genitalia | 2.08e-08 | 3 |
uterus or analog | 2.22e-07 | 1 |
epididymis | 5.06e-07 | 1 |
chest muscle | 7.15e-07 | 1 |
respiratory system muscle | 7.15e-07 | 1 |
skeletal muscle of trunk | 7.15e-07 | 1 |
respiratory system skeletal muscle | 7.15e-07 | 1 |
thoracic segment muscle | 7.15e-07 | 1 |
chest organ | 7.15e-07 | 1 |
muscle of trunk | 7.15e-07 | 1 |
diaphragm | 7.15e-07 | 1 |
future diaphragm | 7.15e-07 | 1 |
vas deferens | 8.02e-07 | 1 |
spermatic cord | 8.02e-07 | 1 |
penis | 8.98e-07 | 1 |
intromittent organ | 8.98e-07 | 1 |
lateral plate mesenchyme | 8.98e-07 | 1 |
undifferentiated genital tubercle | 8.98e-07 | 1 |
somatopleure | 8.98e-07 | 1 |
surface | 9.51e-07 | 1 |