FFCP PHASE1:Hg19::chr11:35236421..35236435,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:35236421..35236435,+
|short_description=p6@CD44
|description=CAGE_peak_6_at_CD44_5end
|association_with_transcript=208bp_to_ENST00000527326_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=960 | |EntrezGene=960 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1681 | |HGNC=1681 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=208bp_to_ENST00000527326_5end | |||
|cluster_id=chr11:35236421..35236435,+ | |||
|coexpression_cluster_id=C620 | |||
|description=CAGE_peak_6_at_CD44_5end | |||
|id=chr11:35236421..35236435,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.82e-19!42;CL:0000860!4.40e-18!45;CL:0002009!3.21e-16!65;CL:0002194!1.74e-15!63;CL:0000576!1.74e-15!63;CL:0000040!1.74e-15!63;CL:0000559!1.74e-15!63;CL:0000557!3.84e-15!71;CL:0002371!1.32e-14!591;CL:0000048!2.58e-14!430;CL:0000723!5.11e-14!436;CL:0000839!6.15e-14!70;CL:0000766!1.92e-13!76;CL:0000144!2.26e-13!625;CL:0000003!2.36e-13!722;CL:0000034!2.75e-12!444;CL:0000548!3.49e-11!679;CL:0000004!3.49e-11!679;CL:0000255!3.49e-11!679;CL:0000012!6.76e-11!682;CL:0002320!7.76e-11!365;CL:0000134!2.03e-10!358;CL:0000055!3.75e-10!180;CL:0000219!1.90e-09!390;CL:0000057!9.84e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.14e-18;33!CL:0002057;1.14e-18;33!CL:0000473;5.97e-16;39!CL:0000234;5.97e-16;39!CL:0000576;1.33e-10;48!CL:0000766;1.06e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.00e-21,48;CL:0000234,1.00e-21,48;CL:0000860,4.57e-21,42;CL:0002057,4.57e-21,42;CL:0002009,3.95e-18,61;CL:0002194,2.60e-17,59;CL:0000576,2.60e-17,59;CL:0000040,2.60e-17,59;CL:0000559,2.60e-17,59;CL:0000557,2.91e-17,67;CL:0000839,8.00e-16,66;CL:0000048,3.09e-15,427;CL:0000766,3.33e-15,72;CL:0000723,3.98e-15,433;CL:0000034,1.03e-13,441;CL:0002320,1.04e-11,361;CL:0000134,1.97e-11,354;CL:0000219,4.76e-11,386;CL:0002031,1.82e-07,120;CL:0002087,2.30e-07,115;CL:0000763,9.82e-07,108;CL:0000049,9.82e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.53e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!6.63e-18!167;UBERON:0002371!1.36e-14!80;UBERON:0002390!8.74e-13!102;UBERON:0003061!8.74e-13!102;UBERON:0004765!1.46e-12!101;UBERON:0001434!1.46e-12!101;UBERON:0001474!6.03e-12!86;UBERON:0002384!6.94e-10!375;UBERON:0002193!8.31e-10!112;UBERON:0003081!1.70e-09!216;UBERON:0000926!1.55e-07!448;UBERON:0004120!1.55e-07!448;UBERON:0006603!1.55e-07!448;UBERON:0003102!5.53e-07!95 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.81e-19,167;UBERON:0002371,1.31e-16,76;UBERON:0004765,9.77e-15,90;UBERON:0001434,1.59e-14,100;UBERON:0001474,4.26e-14,82;UBERON:0002390,3.92e-13,98;UBERON:0003061,3.92e-13,98;UBERON:0000926,7.15e-11,315;UBERON:0004120,7.15e-11,315;UBERON:0006603,7.15e-11,315;UBERON:0002384,9.16e-11,371;UBERON:0002193,6.51e-10,108;UBERON:0002405,8.74e-10,93;UBERON:0003081,1.35e-09,203;UBERON:0003102,2.19e-07,99;UBERON:0002199,9.03e-07,46;UBERON:0002416,9.03e-07,46 | |||
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| ||
|short_description=p6@CD44 | |||
}} | }} |
Latest revision as of 19:34, 17 September 2015
Short description: | p6@CD44 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CD44_5end |
Coexpression cluster: | C620_CD14_Smooth_Fibroblast_Mast_signet_normal_meningioma |
Association with transcript: | 208bp_to_ENST00000527326_5end |
EntrezGene: | CD44 |
HGNC: | 1681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.00e-21 | 48 |
phagocyte | 1.00e-21 | 48 |
classical monocyte | 4.57e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.57e-21 | 42 |
macrophage dendritic cell progenitor | 3.95e-18 | 61 |
monopoietic cell | 2.60e-17 | 59 |
monocyte | 2.60e-17 | 59 |
monoblast | 2.60e-17 | 59 |
promonocyte | 2.60e-17 | 59 |
granulocyte monocyte progenitor cell | 2.91e-17 | 67 |
myeloid lineage restricted progenitor cell | 8.00e-16 | 66 |
multi fate stem cell | 3.09e-15 | 427 |
myeloid leukocyte | 3.33e-15 | 72 |
somatic stem cell | 3.98e-15 | 433 |
stem cell | 1.03e-13 | 441 |
connective tissue cell | 1.04e-11 | 361 |
mesenchymal cell | 1.97e-11 | 354 |
motile cell | 4.76e-11 | 386 |
hematopoietic lineage restricted progenitor cell | 1.82e-07 | 120 |
nongranular leukocyte | 2.30e-07 | 115 |
myeloid cell | 9.82e-07 | 108 |
common myeloid progenitor | 9.82e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.81e-19 | 167 |
bone marrow | 1.31e-16 | 76 |
skeletal element | 9.77e-15 | 90 |
skeletal system | 1.59e-14 | 100 |
bone element | 4.26e-14 | 82 |
hematopoietic system | 3.92e-13 | 98 |
blood island | 3.92e-13 | 98 |
mesoderm | 7.15e-11 | 315 |
mesoderm-derived structure | 7.15e-11 | 315 |
presumptive mesoderm | 7.15e-11 | 315 |
connective tissue | 9.16e-11 | 371 |
hemolymphoid system | 6.51e-10 | 108 |
immune system | 8.74e-10 | 93 |
lateral plate mesoderm | 1.35e-09 | 203 |
surface structure | 2.19e-07 | 99 |
integument | 9.03e-07 | 46 |
integumental system | 9.03e-07 | 46 |