FFCP PHASE1:Hg19::chr4:41216492..41216550,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:41216492..41216550,- to FFCP PHASE1:Hg19::chr4:41216492..41216550,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=323 | |EntrezGene=323 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=582 | |HGNC=582 | ||
|TSSclassifier=strong | |||
|UniProt=D6RDY3,E9PG87,D6RB00,D6RB55 | |UniProt=D6RDY3,E9PG87,D6RB00,D6RB55 | ||
|association_with_transcript=0bp_to_ENST00000503264,ENST00000503503,ENST00000505266,ENST00000508593,ENST00000508707,ENST00000509446_5end | |||
|cluster_id=chr4:41216492..41216550,- | |||
|coexpression_cluster_id=C2790 | |||
|description=CAGE_peak_1_at_APBB2_5end | |||
|id=chr4:41216492..41216550,- | |||
|ontology_enrichment_celltype=CL:0000222!2.73e-13!119;CL:0000220!2.77e-11!246;CL:0002321!4.51e-11!248;CL:0000055!1.07e-09!180;CL:0000680!5.22e-08!57;CL:0000056!5.22e-08!57;CL:0000355!5.22e-08!57;CL:0000076!2.32e-07!62;CL:0000187!2.84e-07!54;CL:0000183!8.15e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.06e-13,121;CL:0002321,2.02e-11,250;CL:0000680,2.29e-08,58;CL:0000056,2.29e-08,58;CL:0000355,2.29e-08,58;CL:0000187,1.27e-07,55;CL:0000076,1.99e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.11e-30!312;UBERON:0000475!3.21e-30!365;UBERON:0000483!3.51e-30!309;UBERON:0004111!1.03e-24!241;UBERON:0000477!4.17e-24!286;UBERON:0000481!2.15e-23!347;UBERON:0000025!1.19e-22!194;UBERON:0000468!7.73e-19!659;UBERON:0000467!1.89e-15!625;UBERON:0003075!2.47e-15!86;UBERON:0007284!2.47e-15!86;UBERON:0000480!3.39e-15!626;UBERON:0000033!6.65e-15!123;UBERON:0004121!6.79e-15!169;UBERON:0000922!8.17e-15!612;UBERON:0002050!1.11e-14!605;UBERON:0005423!1.11e-14!605;UBERON:0000923!2.01e-14!604;UBERON:0005291!2.01e-14!604;UBERON:0006598!2.01e-14!604;UBERON:0002532!2.01e-14!604;UBERON:0000955!2.43e-14!69;UBERON:0006238!2.43e-14!69;UBERON:0002100!2.77e-14!216;UBERON:0000153!8.24e-14!129;UBERON:0007811!8.24e-14!129;UBERON:0002616!1.08e-13!59;UBERON:0000924!1.67e-13!173;UBERON:0006601!1.67e-13!173;UBERON:0001049!2.11e-13!57;UBERON:0005068!2.11e-13!57;UBERON:0006241!2.11e-13!57;UBERON:0007135!2.11e-13!57;UBERON:0002346!2.83e-13!90;UBERON:0002049!3.79e-13!79;UBERON:0007798!3.79e-13!79;UBERON:0000490!5.92e-13!138;UBERON:0005743!2.19e-12!86;UBERON:0001017!3.62e-12!82;UBERON:0000073!5.58e-12!94;UBERON:0001016!5.58e-12!94;UBERON:0003914!1.77e-11!118;UBERON:0004872!2.03e-11!84;UBERON:0005256!2.32e-11!143;UBERON:0003056!1.15e-10!61;UBERON:0000055!1.41e-10!69;UBERON:0001981!1.80e-10!60;UBERON:0007500!1.80e-10!60;UBERON:0004537!1.80e-10!60;UBERON:0006965!1.80e-10!60;UBERON:0003080!3.69e-10!42;UBERON:0002780!6.68e-10!41;UBERON:0001890!6.68e-10!41;UBERON:0006240!6.68e-10!41;UBERON:0000062!1.49e-09!511;UBERON:0001893!1.55e-09!34;UBERON:0002020!1.86e-09!34;UBERON:0003528!1.86e-09!34;UBERON:0000914!3.55e-09!83;UBERON:0002329!3.55e-09!83;UBERON:0003077!3.55e-09!83;UBERON:0003059!3.55e-09!83;UBERON:0007282!3.55e-09!83;UBERON:0009618!3.55e-09!83;UBERON:0007285!3.55e-09!83;UBERON:0002791!4.88e-09!33;UBERON:0007023!8.69e-09!115;UBERON:0000064!1.10e-08!219;UBERON:0004290!1.14e-08!70;UBERON:0003104!1.22e-08!238;UBERON:0009142!1.22e-08!238;UBERON:0001869!2.00e-08!32;UBERON:0001637!2.11e-08!42;UBERON:0003509!2.11e-08!42;UBERON:0004572!2.11e-08!42;UBERON:0001134!5.00e-08!61;UBERON:0002036!5.00e-08!61;UBERON:0003082!5.00e-08!61;UBERON:0002385!6.20e-08!63;UBERON:0001015!6.20e-08!63;UBERON:0000383!6.20e-08!63;UBERON:0004535!9.20e-08!110;UBERON:0001009!1.66e-07!113;UBERON:0002619!2.41e-07!22;UBERON:0004573!8.28e-07!33;UBERON:0004571!8.28e-07!33;UBERON:0001950!8.99e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.91e-08;34!UBERON:0003528;4.35e-08;34!UBERON:0002020;4.35e-08;34!UBERON:0002791;1.21e-07;32!UBERON:0001869;1.39e-07;32!UBERON:0002780;1.62e-07;41!UBERON:0001890;1.62e-07;41!UBERON:0002619;2.27e-07;22!UBERON:0000073;3.02e-07;53!UBERON:0002616;3.02e-07;53!UBERON:0001950;8.66e-07;20 | |||
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| ||
|short_description=p1@APBB2 | |||
}} | }} |
Latest revision as of 19:09, 17 September 2015
Short description: | p1@APBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_APBB2_5end |
Coexpression cluster: | C2790_anaplastic_mesothelioma_corpus_optic_substantia_thalamus_granulosa |
Association with transcript: | 0bp_to_ENST00000503264, ENST00000503503, ENST00000505266, ENST00000508593, ENST00000508707, ENST00000509446_5end |
EntrezGene: | APBB2 |
HGNC: | 582 |
UniProt: | D6RDY3E9PG87D6RB00D6RB55 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.06e-13 | 121 |
embryonic cell | 2.02e-11 | 250 |
muscle precursor cell | 2.29e-08 | 58 |
myoblast | 2.29e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.29e-08 | 58 |
muscle cell | 1.27e-07 | 55 |
squamous epithelial cell | 1.99e-07 | 63 |