FFCP PHASE1:Hg19::chr1:156933510..156933528,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:156933510..156933528,-
|short_description=p5@ARHGEF11
|description=CAGE_peak_5_at_ARHGEF11_5end
|association_with_transcript=29bp_to_ENST00000486670_5end
...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9826 | |EntrezGene=9826 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14580 | |HGNC=14580 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=29bp_to_ENST00000486670_5end | |||
|cluster_id=chr1:156933510..156933528,- | |||
|coexpression_cluster_id=C687 | |||
|description=CAGE_peak_5_at_ARHGEF11_5end | |||
|id=chr1:156933510..156933528,- | |||
|ontology_enrichment_celltype=CL:0000738!1.09e-68!140;CL:0002087!3.65e-65!119;CL:0002031!1.34e-57!124;CL:0000766!2.25e-53!76;CL:0002194!1.23e-51!63;CL:0000576!1.23e-51!63;CL:0000040!1.23e-51!63;CL:0000559!1.23e-51!63;CL:0002009!3.13e-51!65;CL:0000037!1.94e-50!172;CL:0000566!1.94e-50!172;CL:0002057!2.01e-48!42;CL:0002032!2.26e-47!165;CL:0000837!2.26e-47!165;CL:0000988!8.43e-47!182;CL:0000557!1.31e-46!71;CL:0000839!7.12e-46!70;CL:0000860!8.50e-46!45;CL:0000763!6.53e-32!112;CL:0000049!6.53e-32!112;CL:0000084!7.74e-16!25;CL:0000827!7.74e-16!25;CL:0000791!4.44e-15!18;CL:0000789!4.44e-15!18;CL:0002420!4.44e-15!18;CL:0002419!4.44e-15!18;CL:0000790!4.44e-15!18;CL:0000542!1.96e-13!53;CL:0000051!1.96e-13!53;CL:0000838!6.40e-13!52;CL:0000134!1.52e-11!358;CL:0002320!9.15e-11!365;CL:0002393!1.00e-09!9;CL:0002397!1.00e-09!9;CL:0000625!6.14e-09!11;CL:0000219!8.78e-09!390;CL:0000624!4.85e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.59e-53;33!CL:0002057;1.59e-53;33!CL:0000473;2.03e-52;39!CL:0000234;2.03e-52;39!CL:0000576;1.68e-44;48!CL:0000766;9.62e-34;69!CL:0000084;6.56e-22;25!CL:0002087;4.91e-21;104!CL:0000791;7.84e-20;18!CL:0000789;7.84e-20;18!CL:0002419;7.84e-20;18!CL:0000738;2.29e-17;136!CL:0000763;1.33e-14;100!CL:0000235;5.68e-11;6!CL:0000625;9.36e-11;11!CL:0000624;8.36e-10;6!CL:0000988;1.15e-09;177!CL:0000219;2.83e-07;193!CL:0000094;5.29e-07;8!CL:0002393;8.05e-07;6!CL:0002397;8.05e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.39e-78,48;CL:0000234,1.39e-78,48;CL:0002087,6.86e-78,115;CL:0000738,2.42e-76,136;CL:0002194,1.37e-74,59;CL:0000576,1.37e-74,59;CL:0000040,1.37e-74,59;CL:0000559,1.37e-74,59;CL:0000766,1.55e-73,72;CL:0002009,1.27e-71,61;CL:0000860,1.30e-68,42;CL:0002057,1.30e-68,42;CL:0002031,2.08e-67,120;CL:0000839,5.51e-65,66;CL:0000557,8.93e-64,67;CL:0000037,2.51e-57,168;CL:0002032,3.85e-54,161;CL:0000837,3.85e-54,161;CL:0000988,3.23e-53,177;CL:0000763,4.01e-43,108;CL:0000049,4.01e-43,108;CL:0000084,1.22e-21,25;CL:0000827,1.22e-21,25;CL:0000791,1.27e-19,18;CL:0000789,1.27e-19,18;CL:0002420,1.27e-19,18;CL:0002419,1.27e-19,18;CL:0000790,1.27e-19,18;CL:0000134,8.47e-16,354;CL:0002320,4.58e-15,361;CL:0000219,1.65e-12,386;CL:0002393,3.78e-11,9;CL:0002397,3.78e-11,9;CL:0000235,5.85e-11,6;CL:0000625,1.28e-10,11;CL:0000838,1.52e-10,52;CL:0000542,3.10e-10,53;CL:0000051,3.10e-10,53;CL:0000624,9.74e-10,6;CL:0000048,1.88e-09,427;CL:0000723,4.86e-09,433;CL:0000034,1.65e-08,441;CL:0000094,5.49e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;3.31e-49;42!CL:0000790;7.84e-20;18!CL:0000049;9.86e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.20e-52!102;UBERON:0003061!2.20e-52!102;UBERON:0002193!2.03e-49!112;UBERON:0002371!6.36e-39!80;UBERON:0001474!5.38e-36!86;UBERON:0002405!4.20e-32!115;UBERON:0004765!1.49e-29!101;UBERON:0001434!1.49e-29!101;UBERON:0003081!1.93e-16!216;UBERON:0002204!2.94e-12!167;UBERON:0002384!3.90e-10!375;UBERON:0000178!7.34e-10!15;UBERON:0000179!7.34e-10!15;UBERON:0000463!7.34e-10!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.22e-14;15!UBERON:0000179;1.22e-14;15!UBERON:0000463;1.22e-14;15!UBERON:0002390;4.69e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.48e-71,98;UBERON:0003061,4.48e-71,98;UBERON:0002193,1.15e-64,108;UBERON:0002371,2.59e-54,76;UBERON:0002405,2.19e-50,93;UBERON:0001474,3.72e-49,82;UBERON:0004765,2.38e-43,90;UBERON:0001434,2.09e-37,100;UBERON:0003081,5.84e-25,203;UBERON:0002204,3.25e-16,167;UBERON:0000178,1.39e-14,15;UBERON:0000179,1.39e-14,15;UBERON:0000463,1.39e-14,15;UBERON:0002384,4.52e-14,371;UBERON:0000926,4.32e-10,315;UBERON:0004120,4.32e-10,315;UBERON:0006603,4.32e-10,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0.767658796194425,1.85779347979291,0,0,0,0.619737604642413,0,0,1.66198622559563,0.802177789880567,2.17010870715852,9.62836539231675,4.85840499028469,10.3030227053675,6.97911546141911,10.5805264232867,3.39617685662943,8.83230340241602,11.1015329765893,6.19412741790207,12.6584652621746,16.3942852178624,9.69577142543199,3.7922024881028,9.03678557017357,6.77132432971709,8.094420600332,9.82462140208245,7.86532195557796,22.038040250705,16.0464513538047,9.59005688698562,10.2253903057882,13.7629923758926,9.80316926225197,22.9265298516581,17.5889419654253,12.4564449799115,8.03995728821578,11.4726242052444,8.25317609879443,29.6645756290351,26.5159897911047,30.063926806884,4.85887158517466,4.67729459923096,3.56419697364239,3.70684482783434,4.6554836780867,2.4108838004562,3.99017841237748,4.77400025277816,4.93193215164512,0,0.546138611262131,0.889509253863555,0,1.60158394814405,0,0.661044872784862,0,0,0,0.764546456250458,0,0.560508562981536,0,3.14735632182133,1.17903228824749,4.72883447698871,6.68745981562712,6.8443675993054,8.5220605032252,7.79306913631645,2.00538822393312,5.59751224202191,3.32300841875432,8.93652750424551,1.92136979588513,1.95089021339817,1.97325485524411,0.276350017785848,4.05724320029073,9.49034004237187,12.0393372640371,4.18142095219907,3.28597093822942,1.53288197440768,2.40539211837841,2.78321661221453,2.22995790026868,4.55758417699493,0,4.66782869141096,6.65530378002976,1.24930726552346,3.78843603270427,4.10563998460523,1.20964045934839,0.534880391567015,1.30341963494519,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0.97364218096405,1.74129737299267,3.32394901297163,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,11.8184162921951,2.80805118167085,4.31030370637312,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0.381988425558278,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.51366464488333,5.52482800575339,6.32501818449095,0,0,0,0,0,0,1.56919201590938,1.37921532141349,0.431255149719035,1.02674429023799,0,0,0,0,0,4.49404214368309,0,10.7748033493369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54889657470352,3.23571301227925,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,5.58192370155386,6.117097657139,6.26611905891579,4.52640373369799,6.17043409629291,6.48473311192717,7.02040868409549,1.58625035258854,0,0,0,0.371606350251437,0.432807638929335,5.47792193782789,7.174182272797,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,3.23185814404687,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183195186803725,1.06606955203727,4.08773192782946,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0,0,0,0,0,1.20990716048664,0,1.5796644907122,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0,0.104909176269996,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.533937062838473,0.943225830597996,1.65695622138878,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0.192914038270915,0,0,0,0,0,0,0.265729680626726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0,0,0,0.351742488719241,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0.198950775161368,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,1.69171052363736,1.4180735354187,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0.227336094654718,0,0,0,0,0.23806443146374,0.904244737704086,0.372448285775147,0,0,0,0,0,0.740872583160463,0.286888821570705,0,0,0,0,0,0,0.244482888365733,0.406896178315738,0,0.603821380773079,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0.767658796194425,1.85779347979291,0,0,0,0.619737604642413,0,0,1.66198622559563,0.802177789880567,2.17010870715852,9.62836539231675,4.85840499028469,10.3030227053675,6.97911546141911,10.5805264232867,3.39617685662943,8.83230340241602,11.1015329765893,6.19412741790207,12.6584652621746,16.3942852178624,9.69577142543199,3.7922024881028,9.03678557017357,6.77132432971709,8.094420600332,9.82462140208245,7.86532195557796,22.038040250705,16.0464513538047,9.59005688698562,10.2253903057882,13.7629923758926,9.80316926225197,22.9265298516581,17.5889419654253,12.4564449799115,8.03995728821578,11.4726242052444,8.25317609879443,29.6645756290351,26.5159897911047,30.063926806884,4.85887158517466,4.67729459923096,3.56419697364239,3.70684482783434,4.6554836780867,2.4108838004562,3.99017841237748,4.77400025277816,4.93193215164512,0,0.546138611262131,0.889509253863555,0,1.60158394814405,0,0.661044872784862,0,0,0,0.764546456250458,0,0.560508562981536,0,3.14735632182133,1.17903228824749,4.72883447698871,6.68745981562712,6.8443675993054,8.5220605032252,7.79306913631645,2.00538822393312,5.59751224202191,3.32300841875432,8.93652750424551,1.92136979588513,1.95089021339817,1.97325485524411,0.276350017785848,4.05724320029073,9.49034004237187,12.0393372640371,4.18142095219907,3.28597093822942,1.53288197440768,2.40539211837841,2.78321661221453,2.22995790026868,4.55758417699493,0,4.66782869141096,6.65530378002976,1.24930726552346,3.78843603270427,4.10563998460523,1.20964045934839,0.534880391567015,1.30341963494519,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0.97364218096405,1.74129737299267,3.32394901297163,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,11.8184162921951,2.80805118167085,4.31030370637312,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0.381988425558278,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.51366464488333,5.52482800575339,6.32501818449095,0,0,0,0,0,0,1.56919201590938,1.37921532141349,0.431255149719035,1.02674429023799,0,0,0,0,0,4.49404214368309,0,10.7748033493369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54889657470352,3.23571301227925,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,5.58192370155386,6.117097657139,6.26611905891579,4.52640373369799,6.17043409629291,6.48473311192717,7.02040868409549,1.58625035258854,0,0,0,0.371606350251437,0.432807638929335,5.47792193782789,7.174182272797,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,3.23185814404687,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183195186803725,1.06606955203727,4.08773192782946,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0,0,0,0,0,1.20990716048664,0,1.5796644907122,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0,0.104909176269996,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.533937062838473,0.943225830597996,1.65695622138878,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0.192914038270915,0,0,0,0,0,0,0.265729680626726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0,0,0,0.351742488719241,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0.198950775161368,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,1.69171052363736,1.4180735354187,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0.227336094654718,0,0,0,0,0.23806443146374,0.904244737704086,0.372448285775147,0,0,0,0,0,0.740872583160463,0.286888821570705,0,0,0,0,0,0,0.244482888365733,0.406896178315738,0,0.603821380773079,0.320568492303233 | ||
|short_description=p5@ARHGEF11 | |||
}} | }} |
Latest revision as of 18:42, 17 September 2015
Short description: | p5@ARHGEF11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ARHGEF11_5end |
Coexpression cluster: | C687_CD14_Macrophage_Monocytederived_Dendritic_Endothelial_Pericytes_schwannoma |
Association with transcript: | 29bp_to_ENST00000486670_5end |
EntrezGene: | ARHGEF11 |
HGNC: | 14580 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.48e-71 | 98 |
blood island | 4.48e-71 | 98 |
hemolymphoid system | 1.15e-64 | 108 |
bone marrow | 2.59e-54 | 76 |
immune system | 2.19e-50 | 93 |
bone element | 3.72e-49 | 82 |
skeletal element | 2.38e-43 | 90 |
skeletal system | 2.09e-37 | 100 |
lateral plate mesoderm | 5.84e-25 | 203 |
musculoskeletal system | 3.25e-16 | 167 |
blood | 1.39e-14 | 15 |
haemolymphatic fluid | 1.39e-14 | 15 |
organism substance | 1.39e-14 | 15 |
connective tissue | 4.52e-14 | 371 |
mesoderm | 4.32e-10 | 315 |
mesoderm-derived structure | 4.32e-10 | 315 |
presumptive mesoderm | 4.32e-10 | 315 |