FFCP PHASE1:Hg19::chr7:21467674..21467727,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:21467674..21467727,+ to FFCP PHASE1:Hg19::chr7:21467674..21467727,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6671 | |EntrezGene=6671 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11209 | |HGNC=11209 | ||
|TSSclassifier=strong | |||
|UniProt=Q02446 | |UniProt=Q02446 | ||
|association_with_transcript=0bp_to_NM_003112,uc003sva.2,uc003svb.2_5end | |||
|cluster_id=chr7:21467674..21467727,+ | |||
|coexpression_cluster_id=C1055 | |||
|description=CAGE_peak_1_at_SP4_5end | |||
|id=chr7:21467674..21467727,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.38e-30!140;CL:0000037!1.91e-29!172;CL:0000566!1.91e-29!172;CL:0002032!4.04e-27!165;CL:0000837!4.04e-27!165;CL:0000988!3.59e-26!182;CL:0002031!5.11e-24!124;CL:0002087!1.77e-22!119;CL:0000838!5.18e-20!52;CL:0000542!6.39e-20!53;CL:0000051!6.39e-20!53;CL:0000791!2.26e-11!18;CL:0000789!2.26e-11!18;CL:0002420!2.26e-11!18;CL:0002419!2.26e-11!18;CL:0000790!2.26e-11!18;CL:0000084!4.84e-10!25;CL:0000827!4.84e-10!25;CL:0000763!5.26e-10!112;CL:0000049!5.26e-10!112;CL:0000945!1.66e-09!24;CL:0000826!1.66e-09!24;CL:0000766!3.07e-09!76;CL:0000236!2.06e-08!14;CL:0002057!2.36e-08!42;CL:0000625!8.73e-08!11;CL:0000860!2.26e-07!45;CL:0000557!8.54e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000542;3.64e-12;53!CL:0000791;1.19e-11;18!CL:0000789;1.19e-11;18!CL:0002419;1.19e-11;18!CL:0000084;2.70e-10;25!CL:0000945;1.02e-09;24!CL:0002087;1.49e-08;104!CL:0000236;3.35e-08;13!CL:0000625;6.48e-08;11!CL:0000738;4.95e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.01e-33,136;CL:0000037,2.60e-31,168;CL:0002032,6.43e-29,161;CL:0000837,6.43e-29,161;CL:0000988,2.11e-28,177;CL:0002031,5.60e-26,120;CL:0002087,2.17e-24,115;CL:0000838,3.23e-20,52;CL:0000542,3.99e-20,53;CL:0000051,3.99e-20,53;CL:0000791,1.75e-11,18;CL:0000789,1.75e-11,18;CL:0002420,1.75e-11,18;CL:0002419,1.75e-11,18;CL:0000790,1.75e-11,18;CL:0000763,4.51e-11,108;CL:0000049,4.51e-11,108;CL:0000766,1.59e-10,72;CL:0000084,3.90e-10,25;CL:0000827,3.90e-10,25;CL:0000945,1.35e-09,24;CL:0000826,1.35e-09,24;CL:0000236,1.73e-08,14;CL:0000860,1.98e-08,42;CL:0002057,1.98e-08,42;CL:0000625,7.43e-08,11;CL:0000557,7.62e-08,67;CL:0000839,9.06e-08,66;CL:0000473,8.03e-07,48;CL:0000234,8.03e-07,48 | |||
|ontology_enrichment_development_v019=CL:0000051;3.64e-12;53!CL:0000790;1.19e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.62e-30!115;UBERON:0001049!1.24e-16!57;UBERON:0005068!1.24e-16!57;UBERON:0006241!1.24e-16!57;UBERON:0007135!1.24e-16!57;UBERON:0001017!7.25e-16!82;UBERON:0005743!4.33e-15!86;UBERON:0002780!1.16e-14!41;UBERON:0001890!1.16e-14!41;UBERON:0006240!1.16e-14!41;UBERON:0003080!1.32e-14!42;UBERON:0000073!1.82e-14!94;UBERON:0001016!1.82e-14!94;UBERON:0002616!8.84e-13!59;UBERON:0000955!9.95e-13!69;UBERON:0006238!9.95e-13!69;UBERON:0002020!8.14e-12!34;UBERON:0003528!8.14e-12!34;UBERON:0001893!1.03e-11!34;UBERON:0002791!1.96e-11!33;UBERON:0001869!6.58e-11!32;UBERON:0002390!1.21e-10!102;UBERON:0003061!1.21e-10!102;UBERON:0003075!5.92e-10!86;UBERON:0007284!5.92e-10!86;UBERON:0002346!9.13e-10!90;UBERON:0002193!5.10e-09!112;UBERON:0002619!2.44e-08!22;UBERON:0000956!3.96e-08!25;UBERON:0000203!3.96e-08!25;UBERON:0001950!4.29e-08!20;UBERON:0003056!1.48e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.30e-11;41!UBERON:0001890;5.30e-11;41!UBERON:0003528;3.21e-10;34!UBERON:0002020;3.21e-10;34!UBERON:0002791;3.38e-10;32!UBERON:0001893;3.56e-10;34!UBERON:0000073;4.74e-10;53!UBERON:0002616;4.74e-10;53!UBERON:0001869;5.24e-10;32!UBERON:0007023;7.14e-09;114!UBERON:0002619;1.78e-08;22!UBERON:0000956;3.09e-08;25!UBERON:0000203;3.09e-08;25!UBERON:0001950;3.55e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.53e-29,114;UBERON:0001049,8.40e-17,56;UBERON:0005068,8.40e-17,56;UBERON:0006241,8.40e-17,56;UBERON:0007135,8.40e-17,56;UBERON:0001017,5.93e-16,81;UBERON:0000073,8.10e-16,53;UBERON:0002616,8.10e-16,53;UBERON:0001016,3.46e-15,89;UBERON:0002780,8.31e-15,41;UBERON:0001890,8.31e-15,41;UBERON:0003080,8.31e-15,41;UBERON:0006240,8.31e-15,41;UBERON:0000955,8.80e-13,68;UBERON:0006238,8.80e-13,68;UBERON:0003528,6.26e-12,34;UBERON:0002020,6.26e-12,34;UBERON:0001893,7.94e-12,34;UBERON:0002390,9.23e-12,98;UBERON:0003061,9.23e-12,98;UBERON:0002791,3.48e-11,32;UBERON:0001869,5.18e-11,32;UBERON:0002193,5.20e-10,108;UBERON:0003075,5.54e-10,82;UBERON:0007284,5.54e-10,82;UBERON:0002346,8.84e-10,86;UBERON:0002619,2.05e-08,22;UBERON:0000956,3.34e-08,25;UBERON:0000203,3.34e-08,25;UBERON:0001950,3.62e-08,20;UBERON:0003056,9.57e-08,61 | |||
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| ||
|short_description=p1@SP4 | |||
}} | }} |
Latest revision as of 18:10, 17 September 2015
Short description: | p1@SP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SP4_5end |
Coexpression cluster: | C1055_CD19_thymus_CD4_CD8_Neutrophils_Natural_cerebellum |
Association with transcript: | 0bp_to_NM_003112, uc003sva.2, uc003svb.2_5end |
EntrezGene: | SP4 |
HGNC: | 11209 |
UniProt: | Q02446 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.53e-29 | 114 |
neural tube | 8.40e-17 | 56 |
neural rod | 8.40e-17 | 56 |
future spinal cord | 8.40e-17 | 56 |
neural keel | 8.40e-17 | 56 |
central nervous system | 5.93e-16 | 81 |
regional part of nervous system | 8.10e-16 | 53 |
regional part of brain | 8.10e-16 | 53 |
nervous system | 3.46e-15 | 89 |
regional part of forebrain | 8.31e-15 | 41 |
forebrain | 8.31e-15 | 41 |
anterior neural tube | 8.31e-15 | 41 |
future forebrain | 8.31e-15 | 41 |
brain | 8.80e-13 | 68 |
future brain | 8.80e-13 | 68 |
brain grey matter | 6.26e-12 | 34 |
gray matter | 6.26e-12 | 34 |
telencephalon | 7.94e-12 | 34 |
hematopoietic system | 9.23e-12 | 98 |
blood island | 9.23e-12 | 98 |
regional part of telencephalon | 3.48e-11 | 32 |
cerebral hemisphere | 5.18e-11 | 32 |
hemolymphoid system | 5.20e-10 | 108 |
neural plate | 5.54e-10 | 82 |
presumptive neural plate | 5.54e-10 | 82 |
neurectoderm | 8.84e-10 | 86 |
regional part of cerebral cortex | 2.05e-08 | 22 |
cerebral cortex | 3.34e-08 | 25 |
pallium | 3.34e-08 | 25 |
neocortex | 3.62e-08 | 20 |
pre-chordal neural plate | 9.57e-08 | 61 |