FFCP PHASE1:Hg19::chr21:15583237..15583266,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=149998 | |EntrezGene=149998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18821 | |HGNC=18821 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-71bp_to_ENST00000536861_5end | |association_with_transcript=-71bp_to_ENST00000536861_5end | ||
|cluster_id=chr21:15583237..15583266,- | |||
|coexpression_cluster_id=C63 | |coexpression_cluster_id=C63 | ||
|description=CAGE_peak_1_at_LIPI_5end | |description=CAGE_peak_1_at_LIPI_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.65e-12;2 | |ontology_enrichment_development_v019=UBERON:0007297;1.65e-12;2 | ||
|ontology_enrichment_disease=DOID:171!4.23e-36!10;DOID:3095!3.08e-16!22;DOID:2994!3.08e-16!22;DOID:169!1.43e-07!6 | |ontology_enrichment_disease=DOID:171!4.23e-36!10;DOID:3095!3.08e-16!22;DOID:2994!3.08e-16!22;DOID:169!1.43e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:171;6.36e-55;10!DOID:3095;3.38e-25;22!DOID:2994;3.38e-25;22!DOID:3193;2.90e-12;2!DOID:962;2.90e-12;2!DOID:1192;1.30e-08;3 | |ontology_enrichment_disease_v019=DOID:171;6.36e-55;10!DOID:3095;3.38e-25;22!DOID:2994;3.38e-25;22!DOID:3193;2.90e-12;2!DOID:962;2.90e-12;2!DOID:1192;1.30e-08;3 | ||
|ontology_enrichment_disease_v019_2=DOID:171,6.36e-55,10;DOID:3095,3.38e-25,22;DOID:2994,3.38e-25,22;DOID:3193,2.90e-12,2;DOID:962,2.90e-12,2;DOID:1192,1.30e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0003135!6.00e-15!11;UBERON:0006947!1.41e-14!3;UBERON:0004054!1.41e-14!3;UBERON:0001301!9.57e-12!1;UBERON:0001000!2.18e-11!1;UBERON:0005352!2.18e-11!1;UBERON:0005904!3.64e-11!4;UBERON:0000013!6.44e-09!5;UBERON:0002410!6.44e-09!5;UBERON:0003101!1.44e-07!22;UBERON:0000079!1.44e-07!22 | |ontology_enrichment_uberon=UBERON:0003135!6.00e-15!11;UBERON:0006947!1.41e-14!3;UBERON:0004054!1.41e-14!3;UBERON:0001301!9.57e-12!1;UBERON:0001000!2.18e-11!1;UBERON:0005352!2.18e-11!1;UBERON:0005904!3.64e-11!4;UBERON:0000013!6.44e-09!5;UBERON:0002410!6.44e-09!5;UBERON:0003101!1.44e-07!22;UBERON:0000079!1.44e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;5.61e-88;4!UBERON:0000923;5.61e-88;4!UBERON:0010316;5.61e-88;4!UBERON:0005291;5.61e-88;4!UBERON:0002050;1.52e-70;5!UBERON:0005423;1.52e-70;5!UBERON:0001301;1.34e-23;1!UBERON:0003714;2.90e-12;2!UBERON:0003135;5.41e-09;11!UBERON:0006947;8.96e-09;3!UBERON:0004054;8.96e-09;3!UBERON:0005904;6.87e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0002346;5.61e-88;4!UBERON:0000923;5.61e-88;4!UBERON:0010316;5.61e-88;4!UBERON:0005291;5.61e-88;4!UBERON:0002050;1.52e-70;5!UBERON:0005423;1.52e-70;5!UBERON:0001301;1.34e-23;1!UBERON:0003714;2.90e-12;2!UBERON:0003135;5.41e-09;11!UBERON:0006947;8.96e-09;3!UBERON:0004054;8.96e-09;3!UBERON:0005904;6.87e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,1.34e-23,1;UBERON:0003714,2.90e-12,2;UBERON:0003135,5.41e-09,11;UBERON:0006947,8.96e-09,3;UBERON:0004054,8.96e-09,3;UBERON:0005904,6.87e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7878814163785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,65.6972272590033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,12.5602072165979,9.14072156437236,100.63584057831,3.35186950783946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,5.9796223082271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19758224832894,0.267964130156178,0,0,0,0,0,0,0,1.20929600728513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7878814163785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,65.6972272590033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,12.5602072165979,9.14072156437236,100.63584057831,3.35186950783946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,5.9796223082271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19758224832894,0.267964130156178,0,0,0,0,0,0,0,1.20929600728513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@LIPI | |short_description=p1@LIPI | ||
}} | }} |
Latest revision as of 18:10, 17 September 2015
Short description: | p1@LIPI |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIPI_5end |
Coexpression cluster: | C63_neuroectodermal_neuroblastoma_carcinoid_peripheral_chronic_neuroepithelioma_acute |
Association with transcript: | -71bp_to_ENST00000536861_5end |
EntrezGene: | LIPI |
HGNC: | 18821 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epididymis | 1.34e-23 | 1 |
neural tissue | 2.90e-12 | 2 |
male reproductive organ | 5.41e-09 | 11 |
male genital duct | 8.96e-09 | 3 |
internal male genitalia | 8.96e-09 | 3 |
duct of male reproductive system | 6.87e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.36e-55 | 10 |
germ cell and embryonal cancer | 3.38e-25 | 22 |
germ cell cancer | 3.38e-25 | 22 |
peripheral nerve sheath neoplasm | 2.90e-12 | 2 |
neurofibroma | 2.90e-12 | 2 |
peripheral nervous system neoplasm | 1.30e-08 | 3 |