FFCP PHASE1:Hg19::chr3:19988885..19988899,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5868 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9783 | |||
|TSSclassifier=strong | |||
|UniProt=B4DJA5,F8WD79 | |||
|association_with_transcript=0bp_to_ENST00000422242,ENST00000446547_5end | |||
|cluster_id=chr3:19988885..19988899,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_5_at_RAB5A_5end | |||
|id=chr3:19988885..19988899,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.19e-20!76;CL:0002057!4.97e-19!42;CL:0000860!1.02e-17!45;CL:0000557!2.13e-17!71;CL:0000839!9.56e-17!70;CL:0002009!1.34e-16!65;CL:0002194!1.80e-15!63;CL:0000576!1.80e-15!63;CL:0000040!1.80e-15!63;CL:0000559!1.80e-15!63;CL:0000763!1.59e-12!112;CL:0000049!1.59e-12!112;CL:0000738!7.65e-10!140;CL:0002031!3.29e-08!124;CL:0002087!9.56e-07!119;CL:0002032!9.67e-07!165;CL:0000837!9.67e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.80e-19;33!CL:0002057;1.80e-19;33!CL:0000473;1.32e-15;39!CL:0000234;1.32e-15;39!CL:0000576;1.28e-12;48!CL:0000766;1.62e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.04e-24,72;CL:0000557,3.97e-21,67;CL:0000860,2.05e-20,42;CL:0002057,2.05e-20,42;CL:0000473,2.29e-20,48;CL:0000234,2.29e-20,48;CL:0000839,2.43e-20,66;CL:0002009,2.99e-20,61;CL:0002194,6.86e-19,59;CL:0000576,6.86e-19,59;CL:0000040,6.86e-19,59;CL:0000559,6.86e-19,59;CL:0000763,9.74e-14,108;CL:0000049,9.74e-14,108;CL:0000738,8.15e-12,136;CL:0002031,3.59e-10,120;CL:0002087,3.60e-08,115;CL:0002032,2.10e-07,161;CL:0000837,2.10e-07,161;CL:0000037,3.81e-07,168;CL:0000094,8.05e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;6.67e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.80e-16!80;UBERON:0004765!1.04e-13!101;UBERON:0001434!1.04e-13!101;UBERON:0001474!1.78e-13!86;UBERON:0002390!2.08e-10!102;UBERON:0003061!2.08e-10!102;UBERON:0002193!2.92e-10!112;UBERON:0002405!3.34e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.44e-18,76;UBERON:0001474,4.70e-16,82;UBERON:0004765,1.52e-15,90;UBERON:0001434,1.13e-14,100;UBERON:0002405,2.09e-14,93;UBERON:0002390,5.96e-12,98;UBERON:0003061,5.96e-12,98;UBERON:0002193,8.42e-12,108;UBERON:0002780,8.36e-07,41;UBERON:0001890,8.36e-07,41;UBERON:0003080,8.36e-07,41;UBERON:0006240,8.36e-07,41 | |||
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| |||
|short_description=p5@RAB5A | |||
}} |
Latest revision as of 18:06, 17 September 2015
Short description: | p5@RAB5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RAB5A_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000422242, ENST00000446547_5end |
EntrezGene: | RAB5A |
HGNC: | 9783 |
UniProt: | B4DJA5F8WD79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.04e-24 | 72 |
granulocyte monocyte progenitor cell | 3.97e-21 | 67 |
classical monocyte | 2.05e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.05e-20 | 42 |
defensive cell | 2.29e-20 | 48 |
phagocyte | 2.29e-20 | 48 |
myeloid lineage restricted progenitor cell | 2.43e-20 | 66 |
macrophage dendritic cell progenitor | 2.99e-20 | 61 |
monopoietic cell | 6.86e-19 | 59 |
monocyte | 6.86e-19 | 59 |
monoblast | 6.86e-19 | 59 |
promonocyte | 6.86e-19 | 59 |
myeloid cell | 9.74e-14 | 108 |
common myeloid progenitor | 9.74e-14 | 108 |
leukocyte | 8.15e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 3.59e-10 | 120 |
nongranular leukocyte | 3.60e-08 | 115 |
hematopoietic oligopotent progenitor cell | 2.10e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.10e-07 | 161 |
hematopoietic stem cell | 3.81e-07 | 168 |
granulocyte | 8.05e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.44e-18 | 76 |
bone element | 4.70e-16 | 82 |
skeletal element | 1.52e-15 | 90 |
skeletal system | 1.13e-14 | 100 |
immune system | 2.09e-14 | 93 |
hematopoietic system | 5.96e-12 | 98 |
blood island | 5.96e-12 | 98 |
hemolymphoid system | 8.42e-12 | 108 |
regional part of forebrain | 8.36e-07 | 41 |
forebrain | 8.36e-07 | 41 |
anterior neural tube | 8.36e-07 | 41 |
future forebrain | 8.36e-07 | 41 |