FFCP PHASE1:Hg19::chr3:19988856..19988879,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5868 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9783 | |||
|TSSclassifier=strong | |||
|UniProt=F8WCY6 | |||
|association_with_transcript=0bp_to_ENST00000412966_5end | |||
|cluster_id=chr3:19988856..19988879,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_2_at_RAB5A_5end | |||
|id=chr3:19988856..19988879,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.73e-29!76;CL:0000557!1.23e-24!71;CL:0002009!2.17e-24!65;CL:0000839!3.42e-24!70;CL:0002194!3.54e-23!63;CL:0000576!3.54e-23!63;CL:0000040!3.54e-23!63;CL:0000559!3.54e-23!63;CL:0000860!3.12e-21!45;CL:0002057!4.53e-21!42;CL:0000763!5.46e-16!112;CL:0000049!5.46e-16!112;CL:0000738!2.01e-11!140;CL:0000134!2.41e-10!358;CL:0002320!1.50e-09!365;CL:0000034!8.33e-09!444;CL:0002031!1.03e-08!124;CL:0000048!1.51e-08!430;CL:0000723!4.25e-08!436;CL:0000219!6.61e-08!390;CL:0002087!2.54e-07!119;CL:0000063!3.74e-07!578;CL:0000037!5.58e-07!172;CL:0000566!5.58e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.34e-19;33!CL:0002057;9.34e-19;33!CL:0000473;1.30e-17;39!CL:0000234;1.30e-17;39!CL:0000576;5.59e-13;48!CL:0000766;5.59e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.45e-28,72;CL:0000557,5.04e-24,67;CL:0002009,8.04e-24,61;CL:0000839,1.39e-23,66;CL:0000473,2.21e-23,48;CL:0000234,2.21e-23,48;CL:0002194,1.32e-22,59;CL:0000576,1.32e-22,59;CL:0000040,1.32e-22,59;CL:0000559,1.32e-22,59;CL:0000860,4.53e-21,42;CL:0002057,4.53e-21,42;CL:0000763,2.84e-15,108;CL:0000049,2.84e-15,108;CL:0000738,8.78e-11,136;CL:0000134,4.97e-10,354;CL:0002320,3.00e-09,361;CL:0000034,2.16e-08,441;CL:0000048,3.84e-08,427;CL:0002031,3.98e-08,120;CL:0000723,1.05e-07,433;CL:0000219,1.26e-07,386;CL:0002087,9.01e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;1.20e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.44e-22!80;UBERON:0004765!3.38e-19!101;UBERON:0001434!3.38e-19!101;UBERON:0001474!3.99e-18!86;UBERON:0002390!1.73e-15!102;UBERON:0003061!1.73e-15!102;UBERON:0002193!1.90e-15!112;UBERON:0002405!6.98e-15!115;UBERON:0002204!9.17e-10!167;UBERON:0002384!7.79e-09!375;UBERON:0003081!2.02e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.17e-21,76;UBERON:0002405,8.70e-18,93;UBERON:0001434,1.18e-17,100;UBERON:0001474,2.04e-17,82;UBERON:0004765,2.08e-17,90;UBERON:0002390,8.86e-15,98;UBERON:0003061,8.86e-15,98;UBERON:0002193,9.79e-15,108;UBERON:0002204,1.08e-08,167;UBERON:0002384,1.53e-08,371;UBERON:0003081,2.25e-08,203 | |||
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| |||
|short_description=p2@RAB5A | |||
}} |
Latest revision as of 18:06, 17 September 2015
Short description: | p2@RAB5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RAB5A_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000412966_5end |
EntrezGene: | RAB5A |
HGNC: | 9783 |
UniProt: | F8WCY6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.45e-28 | 72 |
granulocyte monocyte progenitor cell | 5.04e-24 | 67 |
macrophage dendritic cell progenitor | 8.04e-24 | 61 |
myeloid lineage restricted progenitor cell | 1.39e-23 | 66 |
defensive cell | 2.21e-23 | 48 |
phagocyte | 2.21e-23 | 48 |
monopoietic cell | 1.32e-22 | 59 |
monocyte | 1.32e-22 | 59 |
monoblast | 1.32e-22 | 59 |
promonocyte | 1.32e-22 | 59 |
classical monocyte | 4.53e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.53e-21 | 42 |
myeloid cell | 2.84e-15 | 108 |
common myeloid progenitor | 2.84e-15 | 108 |
leukocyte | 8.78e-11 | 136 |
mesenchymal cell | 4.97e-10 | 354 |
connective tissue cell | 3.00e-09 | 361 |
stem cell | 2.16e-08 | 441 |
multi fate stem cell | 3.84e-08 | 427 |
hematopoietic lineage restricted progenitor cell | 3.98e-08 | 120 |
somatic stem cell | 1.05e-07 | 433 |
motile cell | 1.26e-07 | 386 |
nongranular leukocyte | 9.01e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.17e-21 | 76 |
immune system | 8.70e-18 | 93 |
skeletal system | 1.18e-17 | 100 |
bone element | 2.04e-17 | 82 |
skeletal element | 2.08e-17 | 90 |
hematopoietic system | 8.86e-15 | 98 |
blood island | 8.86e-15 | 98 |
hemolymphoid system | 9.79e-15 | 108 |
musculoskeletal system | 1.08e-08 | 167 |
connective tissue | 1.53e-08 | 371 |
lateral plate mesoderm | 2.25e-08 | 203 |