FFCP PHASE1:Hg19::chr19:3785250..3785292,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4145 | |EntrezGene=4145 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6906 | |HGNC=6906 | ||
|TSSclassifier=strong | |||
|UniProt=Q16176 | |UniProt=Q16176 | ||
|association_with_transcript=-119bp_to_S71669_5end | |association_with_transcript=-119bp_to_S71669_5end | ||
|cluster_id=chr19:3785250..3785292,- | |||
|coexpression_cluster_id=C166 | |coexpression_cluster_id=C166 | ||
|description=CAGE_peak_3_at_MATK_5end | |description=CAGE_peak_3_at_MATK_5end | ||
|id=chr19:3785250..3785292,- | |id=chr19:3785250..3785292,- | ||
|ontology_enrichment_celltype=CL:0000557!1.44e-21!71;CL:0002009!2.70e-21!65;CL:0002194!3.47e-21!63;CL:0000576!3.47e-21!63;CL:0000040!3.47e-21!63;CL:0000559!3.47e-21!63;CL:0000839!6.39e-21!70;CL:0000860!9.32e-20!45;CL:0000766!2.86e-19!76;CL:0002057!1.69e-17!42;CL:0000763!9.45e-17!112;CL:0000049!9.45e-17!112;CL:0002031!1.13e-10!124;CL:0002032!6.65e-10!165;CL:0000837!6.65e-10!165;CL:0002087!8.36e-10!119;CL:0000037!2.79e-09!172;CL:0000566!2.79e-09!172;CL:0000738!6.63e-09!140;CL:0000988!6.58e-08!182;CL:0000235!8.71e-08!10 | |ontology_enrichment_celltype=CL:0000557!1.44e-21!71;CL:0002009!2.70e-21!65;CL:0002194!3.47e-21!63;CL:0000576!3.47e-21!63;CL:0000040!3.47e-21!63;CL:0000559!3.47e-21!63;CL:0000839!6.39e-21!70;CL:0000860!9.32e-20!45;CL:0000766!2.86e-19!76;CL:0002057!1.69e-17!42;CL:0000763!9.45e-17!112;CL:0000049!9.45e-17!112;CL:0002031!1.13e-10!124;CL:0002032!6.65e-10!165;CL:0000837!6.65e-10!165;CL:0002087!8.36e-10!119;CL:0000037!2.79e-09!172;CL:0000566!2.79e-09!172;CL:0000738!6.63e-09!140;CL:0000988!6.58e-08!182;CL:0000235!8.71e-08!10 | ||
|ontology_enrichment_celltype_v019=CL:0000473;2.07e-39;39!CL:0000234;2.07e-39;39!CL:0000860;8.86e-33;33!CL:0002057;8.86e-33;33!CL:0000235;2.63e-22;6!CL:0000576;1.27e-16;48!CL:0000766;2.14e-14;69!CL:0000840;1.08e-08;5!CL:0000763;5.76e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,3.26e-44,59;CL:0000576,3.26e-44,59;CL:0000040,3.26e-44,59;CL:0000559,3.26e-44,59;CL:0002009,1.30e-42,61;CL:0000473,2.26e-42,48;CL:0000234,2.26e-42,48;CL:0000839,5.03e-39,66;CL:0000557,2.27e-38,67;CL:0000766,2.28e-35,72;CL:0000860,2.70e-27,42;CL:0002057,2.70e-27,42;CL:0000763,6.06e-24,108;CL:0000049,6.06e-24,108;CL:0000235,2.81e-22,6;CL:0002087,3.07e-20,115;CL:0002031,3.53e-19,120;CL:0000738,2.62e-16,136;CL:0002032,2.80e-14,161;CL:0000837,2.80e-14,161;CL:0000037,1.86e-13,168;CL:0000988,1.69e-12,177;CL:0000840,1.08e-08,5;CL:0001029,1.08e-08,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.05e-21;42!CL:0000049;8.11e-07;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.72e-17!80;UBERON:0001474!2.79e-15!86;UBERON:0004765!3.31e-13!101;UBERON:0001434!3.31e-13!101;UBERON:0002390!9.45e-13!102;UBERON:0003061!9.45e-13!102;UBERON:0002193!2.14e-10!112;UBERON:0002405!2.92e-09!115 | |ontology_enrichment_uberon=UBERON:0002371!1.72e-17!80;UBERON:0001474!2.79e-15!86;UBERON:0004765!3.31e-13!101;UBERON:0001434!3.31e-13!101;UBERON:0002390!9.45e-13!102;UBERON:0003061!9.45e-13!102;UBERON:0002193!2.14e-10!112;UBERON:0002405!2.92e-09!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.01e-33,76;UBERON:0001474,1.89e-30,82;UBERON:0004765,2.70e-27,90;UBERON:0002405,3.00e-26,93;UBERON:0002390,1.20e-24,98;UBERON:0003061,1.20e-24,98;UBERON:0001434,4.72e-24,100;UBERON:0002193,6.89e-22,108;UBERON:0002204,1.37e-13,167;UBERON:0003081,3.30e-09,203 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0.377875943688809,0.242584061187816,1.16214518452842,5.75635043230556,2.78735733805593,1.1507695692886,3.58624989140741,1.41889337933151,0.689491361473237,2.5819387343353,1.35426486594342,0.564727018627814,1.63743690034707,0.898893937780338,0.918251677112708,1.92557416245656,0.639337125799041,0,0.398927315243264,0,0.870627715885752,3.97169657283798,0,4.01997864410789,6.77927793946262,3.47502151528187,0.605399502633369,2.57794345191295,2.21523671208619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0.534880391567015,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0.130979075497713,0,0.370784442784429,14.9291801081154,15.4975466196348,22.4698953276882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.414644220061482,0.504641701751257,0,0,0,0,0,0,0,0.337169380156203,0.482022059766964,0,0.653638332277218,0.237270619111097,0.134831308160164,0,1.15424147083917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46217006087397,60.1390961407841,23.3350924793303,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.25248486685276,1.20645999155121,2.67391897890794,0,0,0.102827492703324,0.901029173531752,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,1.50719688529793,0.871533458600294,0.799783929456456,6.08118903205952,0,18.9750545534728,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0.224170287987055,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92495971052672,0,0,0,0,0,0.199579371432817,0.191505370132367,1.2700414963433,0,0,0,0.313359791546046,0,0,0,0,0.425846237690326,0.343505344755765,0,0,0,0,0,0,0.540911356951966,0,0,0,4.68826173670061,0.121360521749513,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0.276283915531148,0,0.102268682502155,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0,2.17499872630438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0.108647371922008,0.31900115973192,0.0915975934018623,0,0,0,0,0,0.19606253431774,0.335643173951685,0,0,0,0,0,0,0,0.796118080530053,0.611030144933625,0,0,0,0.134802265961354,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0,0,0,0,0.992975867626496,0,0,0,0,0,0,0,0,0,0.290268993867255,0.219267951258557,0.492692742319255,0,0,0,0,0,0,0,0,0,0,0,0.229073192331831,0,0,0.372757606696298,0.942776138467182,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0.2249738915515,0,0.182248669974074,0,0.0788057072991982,0,0.316801009558219,0,0.191915197319445,0,0,0,0,0,0,1.19730191562487,0.082092520749339,0,0.339936274560377,0,0,0,0,0.513260513652988,0,0.213574825135389,0,0.828478110694391,0,0,0,0,1.08803560673895,0.5013797880454,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,3.42558400253961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.214441591374926,0.260994291965212,0,0,0,0,0.308801447160972,0.877136198314828,0,1.73622634443823,0.506827321959218,0.76872455576384,0,0,0,0,0,0,0.327609848846413,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0.138314504928436,0.161475645631851,0,0.196295437002051,0.353909170043221,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0.0657727735628491,0,0,0.078493092850514,0.157115589916002,0,0,0.431855182437243,0,0,0.158013611732727,0.813689977576877,0,0,0,0,0,0.430227358820278,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0.731507549893617,0,0.102662806856247,0,0,0,0,0,0,0.109940516745429,0,1.54348316215889,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,1.37618785021362,0,0.157771562193185,0.271965960763659,0,0.5290268405154,0,0,0,0,0.109265571963696,0,0.203977659483963,0.26721740526556,1.01084389488329,0.250707539292375,0.151557396436479,0,0,0.103432995861895,0.213233981900981,0,0.129177819672012,0,0.112131862580613,0,0,0.435433495793923,0,0,0.0717222053926763,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0.377875943688809,0.242584061187816,1.16214518452842,5.75635043230556,2.78735733805593,1.1507695692886,3.58624989140741,1.41889337933151,0.689491361473237,2.5819387343353,1.35426486594342,0.564727018627814,1.63743690034707,0.898893937780338,0.918251677112708,1.92557416245656,0.639337125799041,0,0.398927315243264,0,0.870627715885752,3.97169657283798,0,4.01997864410789,6.77927793946262,3.47502151528187,0.605399502633369,2.57794345191295,2.21523671208619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0.534880391567015,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0.130979075497713,0,0.370784442784429,14.9291801081154,15.4975466196348,22.4698953276882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.414644220061482,0.504641701751257,0,0,0,0,0,0,0,0.337169380156203,0.482022059766964,0,0.653638332277218,0.237270619111097,0.134831308160164,0,1.15424147083917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46217006087397,60.1390961407841,23.3350924793303,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.25248486685276,1.20645999155121,2.67391897890794,0,0,0.102827492703324,0.901029173531752,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,1.50719688529793,0.871533458600294,0.799783929456456,6.08118903205952,0,18.9750545534728,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0.224170287987055,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92495971052672,0,0,0,0,0,0.199579371432817,0.191505370132367,1.2700414963433,0,0,0,0.313359791546046,0,0,0,0,0.425846237690326,0.343505344755765,0,0,0,0,0,0,0.540911356951966,0,0,0,4.68826173670061,0.121360521749513,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0.276283915531148,0,0.102268682502155,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0,2.17499872630438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0.108647371922008,0.31900115973192,0.0915975934018623,0,0,0,0,0,0.19606253431774,0.335643173951685,0,0,0,0,0,0,0,0.796118080530053,0.611030144933625,0,0,0,0.134802265961354,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0,0,0,0,0.992975867626496,0,0,0,0,0,0,0,0,0,0.290268993867255,0.219267951258557,0.492692742319255,0,0,0,0,0,0,0,0,0,0,0,0.229073192331831,0,0,0.372757606696298,0.942776138467182,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0.2249738915515,0,0.182248669974074,0,0.0788057072991982,0,0.316801009558219,0,0.191915197319445,0,0,0,0,0,0,1.19730191562487,0.082092520749339,0,0.339936274560377,0,0,0,0,0.513260513652988,0,0.213574825135389,0,0.828478110694391,0,0,0,0,1.08803560673895,0.5013797880454,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,3.42558400253961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.214441591374926,0.260994291965212,0,0,0,0,0.308801447160972,0.877136198314828,0,1.73622634443823,0.506827321959218,0.76872455576384,0,0,0,0,0,0,0.327609848846413,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0.138314504928436,0.161475645631851,0,0.196295437002051,0.353909170043221,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0.0657727735628491,0,0,0.078493092850514,0.157115589916002,0,0,0.431855182437243,0,0,0.158013611732727,0.813689977576877,0,0,0,0,0,0.430227358820278,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0.731507549893617,0,0.102662806856247,0,0,0,0,0,0,0.109940516745429,0,1.54348316215889,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,1.37618785021362,0,0.157771562193185,0.271965960763659,0,0.5290268405154,0,0,0,0,0.109265571963696,0,0.203977659483963,0.26721740526556,1.01084389488329,0.250707539292375,0.151557396436479,0,0,0.103432995861895,0.213233981900981,0,0.129177819672012,0,0.112131862580613,0,0,0.435433495793923,0,0,0.0717222053926763,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p3@MATK | |short_description=p3@MATK | ||
}} | }} |
Latest revision as of 17:57, 17 September 2015
Short description: | p3@MATK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MATK_5end |
Coexpression cluster: | C166_Macrophage_Monocytederived_Dendritic_adipose_lymph_CD14_lung |
Association with transcript: | -119bp_to_S71669_5end |
EntrezGene: | MATK |
HGNC: | 6906 |
UniProt: | Q16176 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 3.26e-44 | 59 |
monocyte | 3.26e-44 | 59 |
monoblast | 3.26e-44 | 59 |
promonocyte | 3.26e-44 | 59 |
macrophage dendritic cell progenitor | 1.30e-42 | 61 |
defensive cell | 2.26e-42 | 48 |
phagocyte | 2.26e-42 | 48 |
myeloid lineage restricted progenitor cell | 5.03e-39 | 66 |
granulocyte monocyte progenitor cell | 2.27e-38 | 67 |
myeloid leukocyte | 2.28e-35 | 72 |
classical monocyte | 2.70e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.70e-27 | 42 |
myeloid cell | 6.06e-24 | 108 |
common myeloid progenitor | 6.06e-24 | 108 |
macrophage | 2.81e-22 | 6 |
nongranular leukocyte | 3.07e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 3.53e-19 | 120 |
leukocyte | 2.62e-16 | 136 |
hematopoietic oligopotent progenitor cell | 2.80e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.80e-14 | 161 |
hematopoietic stem cell | 1.86e-13 | 168 |
hematopoietic cell | 1.69e-12 | 177 |
immature conventional dendritic cell | 1.08e-08 | 5 |
common dendritic progenitor | 1.08e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.01e-33 | 76 |
bone element | 1.89e-30 | 82 |
skeletal element | 2.70e-27 | 90 |
immune system | 3.00e-26 | 93 |
hematopoietic system | 1.20e-24 | 98 |
blood island | 1.20e-24 | 98 |
skeletal system | 4.72e-24 | 100 |
hemolymphoid system | 6.89e-22 | 108 |
musculoskeletal system | 1.37e-13 | 167 |
lateral plate mesoderm | 3.30e-09 | 203 |