FFCP PHASE1:Hg19::chr19:37341752..37341816,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25850 | |EntrezGene=25850 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16367 | |HGNC=16367 | ||
|TSSclassifier=strong | |||
|UniProt=E9PLT7,B2RCE4,Q14585 | |UniProt=E9PLT7,B2RCE4,Q14585 | ||
|association_with_transcript=0bp_to_ENST00000420450,ENST00000526123,ENST00000532141,NM_001242472,NM_001242474,NR_038362,uc002oey.3,uc002oez.2_5end | |association_with_transcript=0bp_to_ENST00000420450,ENST00000526123,ENST00000532141,NM_001242472,NM_001242474,NR_038362,uc002oey.3,uc002oez.2_5end | ||
|cluster_id=chr19:37341752..37341816,+ | |||
|coexpression_cluster_id=C1234 | |coexpression_cluster_id=C1234 | ||
|description=CAGE_peak_1_at_ZNF345_5end | |description=CAGE_peak_1_at_ZNF345_5end | ||
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|ontology_enrichment_celltype=CL:0000791!1.24e-07!18;CL:0000789!1.24e-07!18;CL:0002420!1.24e-07!18;CL:0002419!1.24e-07!18;CL:0000790!1.24e-07!18;CL:0000542!4.28e-07!53;CL:0000051!4.28e-07!53;CL:0000838!5.95e-07!52 | |ontology_enrichment_celltype=CL:0000791!1.24e-07!18;CL:0000789!1.24e-07!18;CL:0002420!1.24e-07!18;CL:0002419!1.24e-07!18;CL:0000790!1.24e-07!18;CL:0000542!4.28e-07!53;CL:0000051!4.28e-07!53;CL:0000838!5.95e-07!52 | ||
|ontology_enrichment_celltype_v019=CL:0000791;7.73e-08;18!CL:0000789;7.73e-08;18!CL:0002419;7.73e-08;18 | |ontology_enrichment_celltype_v019=CL:0000791;7.73e-08;18!CL:0000789;7.73e-08;18!CL:0002419;7.73e-08;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,9.22e-08,18;CL:0000789,9.22e-08,18;CL:0002420,9.22e-08,18;CL:0002419,9.22e-08,18;CL:0000790,9.22e-08,18;CL:0000542,1.21e-07,53;CL:0000051,1.21e-07,53;CL:0000838,1.70e-07,52 | |||
|ontology_enrichment_development_v019=CL:0000790;7.73e-08;18 | |ontology_enrichment_development_v019=CL:0000790;7.73e-08;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.11e-25!115;UBERON:0001049!1.38e-18!57;UBERON:0005068!1.38e-18!57;UBERON:0006241!1.38e-18!57;UBERON:0007135!1.38e-18!57;UBERON:0001017!8.65e-18!82;UBERON:0000073!1.22e-17!94;UBERON:0001016!1.22e-17!94;UBERON:0005743!2.95e-17!86;UBERON:0002780!5.16e-16!41;UBERON:0001890!5.16e-16!41;UBERON:0006240!5.16e-16!41;UBERON:0003080!3.78e-15!42;UBERON:0002616!1.27e-14!59;UBERON:0000955!7.74e-14!69;UBERON:0006238!7.74e-14!69;UBERON:0002020!8.94e-14!34;UBERON:0003528!8.94e-14!34;UBERON:0001893!2.44e-13!34;UBERON:0002791!4.34e-13!33;UBERON:0001869!1.01e-12!32;UBERON:0002346!1.40e-12!90;UBERON:0003075!5.98e-12!86;UBERON:0007284!5.98e-12!86;UBERON:0002619!2.46e-10!22;UBERON:0000956!7.28e-10!25;UBERON:0000203!7.28e-10!25;UBERON:0003056!1.37e-09!61;UBERON:0001950!2.52e-09!20;UBERON:0000153!5.30e-08!129;UBERON:0007811!5.30e-08!129;UBERON:0000924!9.70e-08!173;UBERON:0006601!9.70e-08!173;UBERON:0004121!3.04e-07!169;UBERON:0000033!6.93e-07!123 | |ontology_enrichment_uberon=UBERON:0007023!2.11e-25!115;UBERON:0001049!1.38e-18!57;UBERON:0005068!1.38e-18!57;UBERON:0006241!1.38e-18!57;UBERON:0007135!1.38e-18!57;UBERON:0001017!8.65e-18!82;UBERON:0000073!1.22e-17!94;UBERON:0001016!1.22e-17!94;UBERON:0005743!2.95e-17!86;UBERON:0002780!5.16e-16!41;UBERON:0001890!5.16e-16!41;UBERON:0006240!5.16e-16!41;UBERON:0003080!3.78e-15!42;UBERON:0002616!1.27e-14!59;UBERON:0000955!7.74e-14!69;UBERON:0006238!7.74e-14!69;UBERON:0002020!8.94e-14!34;UBERON:0003528!8.94e-14!34;UBERON:0001893!2.44e-13!34;UBERON:0002791!4.34e-13!33;UBERON:0001869!1.01e-12!32;UBERON:0002346!1.40e-12!90;UBERON:0003075!5.98e-12!86;UBERON:0007284!5.98e-12!86;UBERON:0002619!2.46e-10!22;UBERON:0000956!7.28e-10!25;UBERON:0000203!7.28e-10!25;UBERON:0003056!1.37e-09!61;UBERON:0001950!2.52e-09!20;UBERON:0000153!5.30e-08!129;UBERON:0007811!5.30e-08!129;UBERON:0000924!9.70e-08!173;UBERON:0006601!9.70e-08!173;UBERON:0004121!3.04e-07!169;UBERON:0000033!6.93e-07!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.10e-12;41!UBERON:0001890;2.10e-12;41!UBERON:0003528;2.18e-12;34!UBERON:0002020;2.18e-12;34!UBERON:0002791;2.50e-12;32!UBERON:0001869;3.85e-12;32!UBERON:0001893;8.70e-12;34!UBERON:0000073;2.39e-11;53!UBERON:0002616;2.39e-11;53!UBERON:0002619;8.66e-11;22!UBERON:0000956;2.57e-10;25!UBERON:0000203;2.57e-10;25!UBERON:0001950;9.72e-10;20!UBERON:0001017;4.29e-08;75!UBERON:0000955;7.31e-08;68!UBERON:0001016;7.92e-08;83!UBERON:0000922;1.18e-07;49!UBERON:0007023;2.76e-07;114 | |ontology_enrichment_uberon_v019=UBERON:0002780;2.10e-12;41!UBERON:0001890;2.10e-12;41!UBERON:0003528;2.18e-12;34!UBERON:0002020;2.18e-12;34!UBERON:0002791;2.50e-12;32!UBERON:0001869;3.85e-12;32!UBERON:0001893;8.70e-12;34!UBERON:0000073;2.39e-11;53!UBERON:0002616;2.39e-11;53!UBERON:0002619;8.66e-11;22!UBERON:0000956;2.57e-10;25!UBERON:0000203;2.57e-10;25!UBERON:0001950;9.72e-10;20!UBERON:0001017;4.29e-08;75!UBERON:0000955;7.31e-08;68!UBERON:0001016;7.92e-08;83!UBERON:0000922;1.18e-07;49!UBERON:0007023;2.76e-07;114 | ||
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| ||
|short_description=p1@ZNF345 | |short_description=p1@ZNF345 | ||
}} | }} |
Latest revision as of 17:16, 17 September 2015
Short description: | p1@ZNF345 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZNF345_5end |
Coexpression cluster: | C1234_cerebellum_parietal_pineal_duodenum_occipital_temporal_thalamus |
Association with transcript: | 0bp_to_ENST00000420450, ENST00000526123, ENST00000532141, NM_001242472, NM_001242474, NR_038362, uc002oey.3, uc002oez.2_5end |
EntrezGene: | ZNF345 |
HGNC: | 16367 |
UniProt: | E9PLT7B2RCE4Q14585 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 9.22e-08 | 18 |
alpha-beta T cell | 9.22e-08 | 18 |
immature T cell | 9.22e-08 | 18 |
mature T cell | 9.22e-08 | 18 |
immature alpha-beta T cell | 9.22e-08 | 18 |
lymphocyte | 1.21e-07 | 53 |
common lymphoid progenitor | 1.21e-07 | 53 |
lymphoid lineage restricted progenitor cell | 1.70e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.41e-25 | 114 |
neural tube | 1.76e-19 | 56 |
neural rod | 1.76e-19 | 56 |
future spinal cord | 1.76e-19 | 56 |
neural keel | 1.76e-19 | 56 |
regional part of nervous system | 2.78e-18 | 53 |
regional part of brain | 2.78e-18 | 53 |
central nervous system | 2.94e-18 | 81 |
nervous system | 3.37e-18 | 89 |
regional part of forebrain | 2.57e-16 | 41 |
forebrain | 2.57e-16 | 41 |
anterior neural tube | 2.57e-16 | 41 |
future forebrain | 2.57e-16 | 41 |
brain | 3.28e-14 | 68 |
future brain | 3.28e-14 | 68 |
brain grey matter | 4.96e-14 | 34 |
gray matter | 4.96e-14 | 34 |
neurectoderm | 6.61e-14 | 86 |
telencephalon | 1.38e-13 | 34 |
neural plate | 2.97e-13 | 82 |
presumptive neural plate | 2.97e-13 | 82 |
regional part of telencephalon | 3.76e-13 | 32 |
cerebral hemisphere | 5.90e-13 | 32 |
pre-chordal neural plate | 8.49e-11 | 61 |
regional part of cerebral cortex | 1.61e-10 | 22 |
cerebral cortex | 4.87e-10 | 25 |
pallium | 4.87e-10 | 25 |
neocortex | 1.73e-09 | 20 |
ecto-epithelium | 4.16e-08 | 104 |
ectoderm-derived structure | 4.45e-08 | 171 |
ectoderm | 4.45e-08 | 171 |
presumptive ectoderm | 4.45e-08 | 171 |
organ system subdivision | 3.06e-07 | 223 |