FFCP PHASE1:Hg19::chr2:55277485..55277498,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt=F8W914 | |UniProt=F8W914 | ||
|association_with_transcript=13bp_to_ENST00000402434_5end | |association_with_transcript=13bp_to_ENST00000402434_5end | ||
|cluster_id=chr2:55277485..55277498,- | |||
|coexpression_cluster_id=C1911 | |coexpression_cluster_id=C1911 | ||
|description=CAGE_peak_5_at_RTN4_5end | |description=CAGE_peak_5_at_RTN4_5end | ||
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|ontology_enrichment_celltype=CL:0000055!1.23e-26!180;CL:0002371!1.99e-20!591;CL:0000222!5.01e-20!119;CL:0000144!3.77e-18!625;CL:0000680!2.42e-16!57;CL:0000056!2.42e-16!57;CL:0000355!2.42e-16!57;CL:0000057!5.34e-15!75;CL:0000187!8.27e-15!54;CL:0000183!1.66e-14!59;CL:0000220!1.96e-14!246;CL:0000192!2.07e-14!42;CL:0000514!2.07e-14!42;CL:0002321!3.59e-14!248;CL:0000548!1.41e-13!679;CL:0000004!1.41e-13!679;CL:0000255!1.41e-13!679;CL:0000012!9.41e-13!682;CL:0000359!3.58e-12!32;CL:0000393!1.12e-11!60;CL:0000211!1.12e-11!60;CL:0000048!4.06e-09!430;CL:0000723!8.52e-09!436;CL:0000034!5.94e-08!444;CL:0000003!1.21e-07!722;CL:0002334!1.99e-07!12;CL:0000136!2.03e-07!15 | |ontology_enrichment_celltype=CL:0000055!1.23e-26!180;CL:0002371!1.99e-20!591;CL:0000222!5.01e-20!119;CL:0000144!3.77e-18!625;CL:0000680!2.42e-16!57;CL:0000056!2.42e-16!57;CL:0000355!2.42e-16!57;CL:0000057!5.34e-15!75;CL:0000187!8.27e-15!54;CL:0000183!1.66e-14!59;CL:0000220!1.96e-14!246;CL:0000192!2.07e-14!42;CL:0000514!2.07e-14!42;CL:0002321!3.59e-14!248;CL:0000548!1.41e-13!679;CL:0000004!1.41e-13!679;CL:0000255!1.41e-13!679;CL:0000012!9.41e-13!682;CL:0000359!3.58e-12!32;CL:0000393!1.12e-11!60;CL:0000211!1.12e-11!60;CL:0000048!4.06e-09!430;CL:0000723!8.52e-09!436;CL:0000034!5.94e-08!444;CL:0000003!1.21e-07!722;CL:0002334!1.99e-07!12;CL:0000136!2.03e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.94e-11;32!CL:0000192;9.29e-11;43!CL:0000187;1.70e-08;55!CL:0002334;1.97e-07;12!CL:0000057;9.54e-07;73 | |ontology_enrichment_celltype_v019=CL:0000359;1.94e-11;32!CL:0000192;9.29e-11;43!CL:0000187;1.70e-08;55!CL:0002334;1.97e-07;12!CL:0000057;9.54e-07;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.34e-20,121;CL:0000680,1.02e-16,58;CL:0000056,1.02e-16,58;CL:0000355,1.02e-16,58;CL:0000057,2.08e-15,76;CL:0000187,3.52e-15,55;CL:0000192,8.72e-15,43;CL:0000514,8.72e-15,43;CL:0002321,1.76e-14,250;CL:0000359,3.58e-12,32;CL:0000393,5.06e-12,61;CL:0000211,5.06e-12,61;CL:0000048,1.30e-09,427;CL:0000723,2.81e-09,433;CL:0000034,2.10e-08,441;CL:0002334,1.99e-07,12;CL:0000136,2.03e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;9.29e-11;43!CL:0000355;5.43e-09;58 | |ontology_enrichment_development_v019=CL:0000514;9.29e-11;43!CL:0000355;5.43e-09;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.14e-20!83;UBERON:0002329!6.14e-20!83;UBERON:0003077!6.14e-20!83;UBERON:0003059!6.14e-20!83;UBERON:0007282!6.14e-20!83;UBERON:0009618!6.14e-20!83;UBERON:0007285!6.14e-20!83;UBERON:0000486!4.60e-19!82;UBERON:0004290!4.16e-17!70;UBERON:0002049!9.74e-16!79;UBERON:0007798!9.74e-16!79;UBERON:0000475!4.05e-15!365;UBERON:0005256!3.02e-14!143;UBERON:0001134!6.18e-14!61;UBERON:0002036!6.18e-14!61;UBERON:0003082!6.18e-14!61;UBERON:0000055!3.27e-13!69;UBERON:0002385!6.76e-13!63;UBERON:0001015!6.76e-13!63;UBERON:0000383!6.76e-13!63;UBERON:0001637!6.91e-13!42;UBERON:0003509!6.91e-13!42;UBERON:0004572!6.91e-13!42;UBERON:0001981!8.16e-13!60;UBERON:0007500!8.16e-13!60;UBERON:0004537!8.16e-13!60;UBERON:0006965!8.16e-13!60;UBERON:0000119!2.98e-12!312;UBERON:0002100!3.27e-12!216;UBERON:0000483!1.44e-11!309;UBERON:0004872!1.92e-11!84;UBERON:0004573!6.78e-11!33;UBERON:0004571!6.78e-11!33;UBERON:0004535!8.79e-11!110;UBERON:0001009!5.92e-10!113;UBERON:0000467!6.46e-10!625;UBERON:0000490!1.23e-09!138;UBERON:0000480!1.30e-09!626;UBERON:0003914!1.68e-09!118;UBERON:0000468!5.37e-09!659;UBERON:0003102!2.95e-08!95;UBERON:0004111!1.11e-07!241;UBERON:0002204!1.77e-07!167;UBERON:0000477!4.32e-07!286;UBERON:0000923!5.75e-07!604;UBERON:0005291!5.75e-07!604;UBERON:0006598!5.75e-07!604;UBERON:0002532!5.75e-07!604;UBERON:0002050!8.95e-07!605;UBERON:0005423!8.95e-07!605 | |ontology_enrichment_uberon=UBERON:0000914!6.14e-20!83;UBERON:0002329!6.14e-20!83;UBERON:0003077!6.14e-20!83;UBERON:0003059!6.14e-20!83;UBERON:0007282!6.14e-20!83;UBERON:0009618!6.14e-20!83;UBERON:0007285!6.14e-20!83;UBERON:0000486!4.60e-19!82;UBERON:0004290!4.16e-17!70;UBERON:0002049!9.74e-16!79;UBERON:0007798!9.74e-16!79;UBERON:0000475!4.05e-15!365;UBERON:0005256!3.02e-14!143;UBERON:0001134!6.18e-14!61;UBERON:0002036!6.18e-14!61;UBERON:0003082!6.18e-14!61;UBERON:0000055!3.27e-13!69;UBERON:0002385!6.76e-13!63;UBERON:0001015!6.76e-13!63;UBERON:0000383!6.76e-13!63;UBERON:0001637!6.91e-13!42;UBERON:0003509!6.91e-13!42;UBERON:0004572!6.91e-13!42;UBERON:0001981!8.16e-13!60;UBERON:0007500!8.16e-13!60;UBERON:0004537!8.16e-13!60;UBERON:0006965!8.16e-13!60;UBERON:0000119!2.98e-12!312;UBERON:0002100!3.27e-12!216;UBERON:0000483!1.44e-11!309;UBERON:0004872!1.92e-11!84;UBERON:0004573!6.78e-11!33;UBERON:0004571!6.78e-11!33;UBERON:0004535!8.79e-11!110;UBERON:0001009!5.92e-10!113;UBERON:0000467!6.46e-10!625;UBERON:0000490!1.23e-09!138;UBERON:0000480!1.30e-09!626;UBERON:0003914!1.68e-09!118;UBERON:0000468!5.37e-09!659;UBERON:0003102!2.95e-08!95;UBERON:0004111!1.11e-07!241;UBERON:0002204!1.77e-07!167;UBERON:0000477!4.32e-07!286;UBERON:0000923!5.75e-07!604;UBERON:0005291!5.75e-07!604;UBERON:0006598!5.75e-07!604;UBERON:0002532!5.75e-07!604;UBERON:0002050!8.95e-07!605;UBERON:0005423!8.95e-07!605 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.31e-10;33!UBERON:0004571;5.31e-10;33!UBERON:0001637;1.79e-09;42!UBERON:0003509;1.79e-09;42!UBERON:0004572;1.79e-09;42!UBERON:0007500;4.38e-08;56!UBERON:0001981;4.38e-08;56!UBERON:0004537;4.38e-08;56!UBERON:0002049;1.94e-07;75!UBERON:0007798;1.94e-07;75!UBERON:0000055;2.20e-07;65!UBERON:0003914;6.32e-07;74 | |ontology_enrichment_uberon_v019=UBERON:0004573;5.31e-10;33!UBERON:0004571;5.31e-10;33!UBERON:0001637;1.79e-09;42!UBERON:0003509;1.79e-09;42!UBERON:0004572;1.79e-09;42!UBERON:0007500;4.38e-08;56!UBERON:0001981;4.38e-08;56!UBERON:0004537;4.38e-08;56!UBERON:0002049;1.94e-07;75!UBERON:0007798;1.94e-07;75!UBERON:0000055;2.20e-07;65!UBERON:0003914;6.32e-07;74 | ||
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|short_description=p5@RTN4 | |short_description=p5@RTN4 | ||
}} | }} |
Latest revision as of 17:02, 17 September 2015
Short description: | p5@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RTN4_5end |
Coexpression cluster: | C1911_Smooth_mesenchymal_Fibroblast_leiomyoma_Preadipocyte_Adipocyte_osteoclastoma |
Association with transcript: | 13bp_to_ENST00000402434_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | F8W914 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.34e-20 | 121 |
muscle precursor cell | 1.02e-16 | 58 |
myoblast | 1.02e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.02e-16 | 58 |
fibroblast | 2.08e-15 | 76 |
muscle cell | 3.52e-15 | 55 |
smooth muscle cell | 8.72e-15 | 43 |
smooth muscle myoblast | 8.72e-15 | 43 |
embryonic cell | 1.76e-14 | 250 |
vascular associated smooth muscle cell | 3.58e-12 | 32 |
electrically responsive cell | 5.06e-12 | 61 |
electrically active cell | 5.06e-12 | 61 |
multi fate stem cell | 1.30e-09 | 427 |
somatic stem cell | 2.81e-09 | 433 |
stem cell | 2.10e-08 | 441 |
preadipocyte | 1.99e-07 | 12 |
fat cell | 2.03e-07 | 15 |