FFCP PHASE1:Hg19::chr2:55276285..55276297,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IUA4,Q9NQC3 | |||
|association_with_transcript=28bp_to_NM_207521,uc002ryd.2_5end | |||
|cluster_id=chr2:55276285..55276297,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_33_at_RTN4_5end | |||
|id=chr2:55276285..55276297,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002615;2.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,2.19e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006222;2.47e-19;1!UBERON:0009117;2.97e-08;10!UBERON:0005564;2.97e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.55e-07;3!DOID:127;2.55e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.16e-07,3;DOID:127,3.16e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0003075!1.98e-08!86;UBERON:0007284!1.98e-08!86;UBERON:0000033!2.64e-08!123;UBERON:0004121!4.98e-08!169;UBERON:0002616!5.64e-08!59;UBERON:0003056!6.09e-08!61;UBERON:0005743!7.08e-08!86;UBERON:0001049!7.11e-08!57;UBERON:0005068!7.11e-08!57;UBERON:0006241!7.11e-08!57;UBERON:0007135!7.11e-08!57;UBERON:0000073!7.60e-08!94;UBERON:0001016!7.60e-08!94;UBERON:0000153!8.50e-08!129;UBERON:0007811!8.50e-08!129;UBERON:0002346!1.43e-07!90;UBERON:0002308!1.55e-07!9;UBERON:0000125!1.55e-07!9;UBERON:0000924!1.79e-07!173;UBERON:0006601!1.79e-07!173;UBERON:0001017!1.89e-07!82;UBERON:0000955!2.77e-07!69;UBERON:0006238!2.77e-07!69;UBERON:0002780!2.97e-07!41;UBERON:0001890!2.97e-07!41;UBERON:0006240!2.97e-07!41;UBERON:0000475!3.94e-07!365;UBERON:0003080!6.21e-07!42;UBERON:0002020!9.92e-07!34;UBERON:0003528!9.92e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002426;2.47e-19;1!UBERON:0003831;2.47e-19;1!UBERON:0003898;2.47e-19;1!UBERON:0004830;2.47e-19;1!UBERON:0003830;2.47e-19;1!UBERON:0005175;2.47e-19;1!UBERON:0001774;2.47e-19;1!UBERON:0001103;2.47e-19;1!UBERON:0001894;2.83e-11;7!UBERON:0001905;2.37e-10;2!UBERON:0005090;2.37e-10;2!UBERON:0001630;2.37e-10;2!UBERON:0002757;2.37e-10;2!UBERON:0010134;2.37e-10;2!UBERON:0005408;2.37e-10;2!UBERON:0001899;2.37e-10;2!UBERON:0000473;4.31e-10;8!UBERON:0003135;1.39e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002426,1.30e-19,1;UBERON:0003831,1.30e-19,1;UBERON:0003898,1.30e-19,1;UBERON:0004830,1.30e-19,1;UBERON:0003830,1.30e-19,1;UBERON:0005175,1.30e-19,1;UBERON:0001774,1.30e-19,1;UBERON:0001103,1.30e-19,1;UBERON:0010084,1.30e-19,1;UBERON:0001894,2.83e-11,7;UBERON:0006222,2.83e-11,7;UBERON:0005090,1.72e-10,2;UBERON:0001630,1.72e-10,2;UBERON:0001905,3.58e-10,2;UBERON:0002757,3.58e-10,2;UBERON:0010134,3.58e-10,2;UBERON:0005408,3.58e-10,2;UBERON:0001899,3.58e-10,2;UBERON:0000473,4.03e-10,8;UBERON:0003135,1.33e-07,11 | |||
|phase1_expression=0,0,0.422863212287913,0,1.34088328328186,0,0,0.631719873426831,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.251085279189606,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0.398927315243264,0,0.290209238628584,0,0.622822248995575,0,0,0,0,0,0,0,0.212604299965044,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,1.30979075497713,0,0,0,0,0.132957960518865,0,0,0,0.39752481473341,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.662045904066094,0,0,0,0,0,0,0.538842688278752,0,0.151357427644931,0,0,0.312160076830321,0,0,0.117434498643765,0.161872944368132,0,0,0,0.309977343527296,1.18800285728205,0.494533858557114,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0,0,0,0.0974370051611986,0,0.276149695926898,0,0,0,0.169560592310488,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0.587043471179108,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,0.16798212819886,0,0.268675568108545,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.57191197463259,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.479249710983165,1.14861935834114,0,0.723906533337896,0,0.358121926479791,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0.177561725313127,0,0,0.232420756919918,0,0,0,0.229628896329213,0.182091168006717,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0,0,0,0.356128142586949,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0.62962469366128,0,0.924100740528266,0,0.869932992075073,0,0.429374660225974,0,0,0.38126038784765,0,0,0,0,0.179872457583315,0.54907405947211,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0.282810863907425,0,0,0.66343897524122,0,0,0,0,0,0,0,0.294747123039363,0.35667105148125,0,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0.199579371432817,0.191505370132367,0,0,0.280797178113459,0,0,0,0,0.1605880751037,0.201799707191048,0,0,0,0.223676107892416,0.166849141711909,0,0,0,0,0,0,0,0.439524537815682,0,0,0.284136146806413,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0.358042349351218,0,0,0,0,0,0.556608588971108,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.361789315876224,0,0.110579259931225,0,0.219385397153973,0.10893846351899,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0.247127877893006,0.104421949505455,0.404406797884062,1.60515529459758,1.63985112007737,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0.171986032471617,0.19351266257817,0,0,0,0.176512253383001,0,0,0,0.316553979779393,0,0,0,0,0.288180834308212,0,0,0,0.124252535565433,0.235694034616795,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0.279282401272254,0,0,0,0,0,0.268733889946905,0.360299883542404,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0.408610218334727,0.160753148465019,0.137539436597234,0,0,0,0.0607495566580247,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0.25426853765475,1.08599920350743,0,0.653174720218818,0,0,0.511164065356265,0,0,0,0.517131825446202,0.13223260174269,0,0,0,0.157204305099666,0.414239055347196,0,0,0.121792598380896,0,0,0.2506898940227,0.612691153526923,1.31149052283922,0,0,0.244052529803926,0,0,0.221858103073705,0.310482014706917,0.276697269872462,0,0.151649117541648,0.285465333544967,0.235265819698172,0,0,0,0.467426619694449,0,0,0,0,0.686520205190771,0.453692771289717,0.15543720058278,0,0.159296767163702,0,0,0,0,0.521745061811734,0.150257608997218,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0.176689145945881,0.192914038270915,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0.106691729694141,0,0,0.552317850755522,0.279759015438889,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0,0.205116364240755,0,0,0,0,0.196295437002051,0,0,0,0.381382095467167,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0.0675375846183947,0,0.206686796501184,0.19024743058172,0,0.548257766857182,0,0,0.127762427639595,0.535701835878287,1.00885116665647,0,0,0,0,0,0.747667062745149,0,0,0,0,0.471346769748006,0,0,0,0,0.285906176706625,0.158013611732727,0,0,0,0,0,0.691259661814092,0,0.473328002922261,0.511280428554946,0,0,0,0,0.223710863595585,0,0.121917924982269,0,0.307988420568741,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0.0939839179798536,0.128915775947154,0,0,0,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| |||
|short_description=p33@RTN4 | |||
}} |
Latest revision as of 16:53, 17 September 2015
Short description: | p33@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_33_at_RTN4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 28bp_to_NM_207521, uc002ryd.2_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | Q8IUA4Q9NQC3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 2.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
chest muscle | 1.30e-19 | 1 |
respiratory system muscle | 1.30e-19 | 1 |
skeletal muscle of trunk | 1.30e-19 | 1 |
respiratory system skeletal muscle | 1.30e-19 | 1 |
thoracic segment muscle | 1.30e-19 | 1 |
chest organ | 1.30e-19 | 1 |
muscle of trunk | 1.30e-19 | 1 |
diaphragm | 1.30e-19 | 1 |
future diaphragm | 1.30e-19 | 1 |
diencephalon | 2.83e-11 | 7 |
future diencephalon | 2.83e-11 | 7 |
muscle structure | 1.72e-10 | 2 |
muscle organ | 1.72e-10 | 2 |
pineal body | 3.58e-10 | 2 |
regional part of epithalamus | 3.58e-10 | 2 |
secretory circumventricular organ | 3.58e-10 | 2 |
circumventricular organ | 3.58e-10 | 2 |
epithalamus | 3.58e-10 | 2 |
testis | 4.03e-10 | 8 |
male reproductive organ | 1.33e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.16e-07 | 3 |
leiomyoma | 3.16e-07 | 3 |