FFCP PHASE1:Hg19::chr1:156561667..156561672,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:156561667..156561672,+ to FFCP PHASE1:Hg19::chr1:156561667..156561672,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=128240 | |EntrezGene=128240 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18453 | |HGNC=18453 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_ENST00000467374_5end | |||
|cluster_id=chr1:156561667..156561672,+ | |||
|description=CAGE_peak_2_at_APOA1BP_5end | |||
|id=chr1:156561667..156561672,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.41e-18!254;CL:0002321!2.82e-12!248;CL:0000220!9.57e-12!246 | |||
|ontology_enrichment_celltype_v019=CL:0002586;1.08e-09;3!CL:0002553;2.89e-08;1!CL:0000147;1.18e-07;14!CL:0000149;1.78e-07;4!CL:0000306;2.75e-07;4!CL:0002222;2.75e-07;4!CL:0002224;2.75e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.44e-09,3;CL:0002553,3.10e-08,1;CL:0000147,1.27e-07,14;CL:0000149,2.20e-07,4;CL:0000306,2.50e-07,4;CL:0002222,2.50e-07,4;CL:0002224,2.50e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.19e-12!143;DOID:162!9.19e-12!235;DOID:14566!4.80e-11!239;DOID:305!5.45e-10!106 | |||
|ontology_enrichment_disease_v019=DOID:3151;1.07e-07;1!DOID:3149;1.07e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.87e-07,1;DOID:3149,1.87e-07,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001781;1.08e-09;3!UBERON:0001782;1.08e-09;3!UBERON:0007625;1.40e-09;11!UBERON:0010077;2.75e-07;4!UBERON:0005389;2.75e-07;4!UBERON:0000484;2.75e-07;4!UBERON:0000965;2.75e-07;4!UBERON:0001803;2.75e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,1.44e-09,3;UBERON:0005424,1.44e-09,3;UBERON:0007625,1.52e-09,11;UBERON:0001781,2.20e-07,4;UBERON:0010077,2.50e-07,4;UBERON:0005389,2.50e-07,4;UBERON:0000484,2.50e-07,4;UBERON:0002546,2.50e-07,4;UBERON:0000965,2.50e-07,4;UBERON:0001803,2.50e-07,4;UBERON:0003073,2.50e-07,4;UBERON:0005426,2.50e-07,4 | |||
|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0.982935746006035,0.697801167972428,0,0,0,0,0,0,0.730310090387373,0,0.492484232307152,0.612002073732759,0.940364164434263,0.85870796139317,0.547497700291537,0.627713197974014,0,0,0,0,0,0,0.919421224478927,0,0.739508020333575,0.232401601740905,0.142169232487422,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.383587685530591,0,1.00267582127178,0.144846518960824,0,0,0.283604451492204,0.221729397462564,0.175669571386252,0.196468613246569,0,0.741568885568859,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0,1.25849830862972,0,0.208994966536811,0,0,0.33472061276467,0,0,0.24406205754817,0,0.81014194788176,0.446498641420399,0,0.675668882899933,0,0.949265659568129,0.549605231791222,0,0,0,0.496971951695318,0,0.264818361626438,0,0.709336764396714,0,0,0.24666754841716,0,0,0,0.605429710579726,0,0.468642863667593,0.624320153660641,0.570471821544449,0,0.352303495931295,0,0,0,0,0.103325781175765,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0.252433774244115,0.184099797284599,0,0,0.10075209822764,0,0.193260853163297,0,0,0.609868530647977,0.265059536642971,1.2781333715647,0.725627385107593,0.756962552626885,0.36497735907583,0,0,0,0,0,0.473227200159376,0.674338760312407,0.482022059766964,0.882351781859152,0.653638332277218,0.474541238222193,1.07865046528132,0.196221465125346,0.769494313892781,0.738155454624648,0,0.8231480226628,0,1.26755034821831,0,0,0,0.614942192715568,0.514703430895577,0.109750285408626,0,0,0.185176890317059,0,0,1.44331342025273,0.34779121492523,0,0.144366447761074,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0.126995788584338,0.763976851116555,2.34434894420094,0,0.102827492703324,0,0.285826432630578,0.112131084345361,0.43596006883328,0.07333828582095,0,0,0,0.26593811658487,0,0,0,0.532844358032199,0.142977993658148,0.542621605391443,0,0,0,0,0.904318131178758,2.61460037580088,0.599837947092342,0,0,0,0.239624855491583,0,0,0,0.410952645100767,0.179060963239896,0,0,0,0,0.254094624222463,1.30139853857622,0,0.167516265334349,0,0,0,0,0.24538298343828,0,0,0,0,0,0.117141414992713,0,0,0,0,0.368738337083406,0,0.195801157462741,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0.355123450626254,0.0821271560138091,0,0,0.725156697549733,0.601519410909855,0.184161977871793,0.114814448164607,0.182091168006717,0.131124414959424,0.902399225814824,0.231046011313244,0.784349769176855,1.46139224653261,0,0,0,0.215915916102139,0,0.270946437543853,1.50506932156456,0.254876273045038,0.831076008928724,0.223874754722178,0,0,1.02580050046556,2.29610251989794,0.976135183992909,0,0.366277859273374,0.330037999682352,0,0,0,0.096670718292122,0.308097234229289,0.15350367472613,0.137836572484531,0,0.145016693914229,0,0.267096106940212,0.661139661443912,0.192190067365106,0.255225424989168,0.10115778085555,0,0,0,0,0.532306030317022,0,0,0.286249773483982,0,0.316379424718726,0,0,0.42793898803392,0,0,0.359744915166629,0.274537029736055,0.235624804691373,0.202182481573316,0,0,0.48763373908959,0.243713489631284,1.05650146756755,0,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0.286822704408103,0,0,0.354761064070598,0,0,0,0,0.288666338176536,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0.962479855263359,0,0,0,0,0,0.399158742865633,0,0,0,0,0,0.156679895773023,0,0,0.321176150207399,0.201799707191048,0,0,0,0,0,0.19538809540204,0,1.23087398947712,0,0.33307196799782,0,0.18714054040822,0,0.121360521749513,0,0,0,0.296964680832639,0,0,0.281338832821026,0,0.16480387422676,0,0,0,0,0.306806047506464,0,0,0,0.179021174675609,0.511572370226872,0,0,0,0.969332746095218,0.278304294485554,0,0,0.437299999980979,0,0,0.254253650292766,0,0.689486746482929,0,0.520874984799877,0,0.241192877250816,0,0.221158519862449,0,0.219385397153973,0.32681539055697,0.139423744278603,0.230850775511391,0,0.23056390438806,0.179515288819544,0.217294743844016,0,0.0915975934018623,0,0,0,0,0,0.19606253431774,0.503464760927528,0,0,0,0,0.706765357169704,0.865554558968364,0,0,0,0,0,0,0.067401132980677,0,0.702793337176017,0,0.586993856796269,0.485560759068186,0,0,0,0.126373159256976,3.00646838828985,2.07376382794494,0,0,0,0,1.13843818411917,0.277349346026277,0.347119476670262,0,0.261177619741208,0.17472666824203,0,0.290268993867255,0.0730893170861856,0.492692742319255,0.0969890164884194,0.176512253383001,0,0,0,0.189932387867636,0.586654148204409,0,0,0.39961921916426,0.288180834308212,0.458146384663663,4.97625493799697,0.14405479798815,0.248505071130865,0.235694034616795,0.67952103036807,0.732219924186332,0.407992870545287,0.288950589901519,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0.399358000997982,0.429226048136571,0,0.268733889946905,0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| ||
|short_description=p2@APOA1BP | |||
}} | }} |
Latest revision as of 16:29, 17 September 2015
Short description: | p2@APOA1BP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_APOA1BP_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_ENST00000467374_5end |
EntrezGene: | APOA1BP |
HGNC: | 18453 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.44e-09 | 3 |
lung fibroblast | 3.10e-08 | 1 |
pigment cell | 1.27e-07 | 14 |
visual pigment cell | 2.20e-07 | 4 |
crystallin accumulating cell | 2.50e-07 | 4 |
vertebrate lens cell | 2.50e-07 | 4 |
lens epithelial cell | 2.50e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 1.44e-09 | 3 |
presumptive retinal pigmented epithelium | 1.44e-09 | 3 |
pigment epithelium of eye | 1.52e-09 | 11 |
layer of retina | 2.20e-07 | 4 |
cuboidal epithelium | 2.50e-07 | 4 |
transparent eye structure | 2.50e-07 | 4 |
simple cuboidal epithelium | 2.50e-07 | 4 |
cranial placode | 2.50e-07 | 4 |
lens of camera-type eye | 2.50e-07 | 4 |
epithelium of lens | 2.50e-07 | 4 |
lens placode | 2.50e-07 | 4 |
lens vesicle | 2.50e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.87e-07 | 1 |
keratoacanthoma | 1.87e-07 | 1 |