FFCP PHASE1:Hg19::chr2:157189180..157189290,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:157189180..157189290,-
|short_description=p1@NR4A2
|description=CAGE_peak_1_at_NR4A2_5end
|association_with_transcript=0bp_to_ENST00000339562,ENST000004217...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4929 | |EntrezGene=4929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7981 | |HGNC=7981 | ||
|TSSclassifier=strong | |||
|UniProt=P43354,C9JWQ1,C9IYM5,Q6NXU0,F5H4G9,F1D8N6,Q53EL4 | |UniProt=P43354,C9JWQ1,C9IYM5,Q6NXU0,F5H4G9,F1D8N6,Q53EL4 | ||
|association_with_transcript=0bp_to_ENST00000339562,ENST00000421709,ENST00000424077,ENST00000426264,ENST00000539077,NM_006186,uc002tyx.3,uc002tyz.3,uc010zcf.1_5end | |||
|cluster_id=chr2:157189180..157189290,- | |||
|coexpression_cluster_id=C2428 | |||
|description=CAGE_peak_1_at_NR4A2_5end | |||
|id=chr2:157189180..157189290,- | |||
|ontology_enrichment_celltype=CL:0002057!7.52e-22!42;CL:0000860!8.96e-22!45;CL:0000766!5.18e-19!76;CL:0000738!1.81e-18!140;CL:0000557!3.06e-16!71;CL:0000839!4.00e-14!70;CL:0002009!4.61e-14!65;CL:0000037!4.99e-14!172;CL:0000566!4.99e-14!172;CL:0002031!7.77e-14!124;CL:0002194!5.48e-13!63;CL:0000576!5.48e-13!63;CL:0000040!5.48e-13!63;CL:0000559!5.48e-13!63;CL:0002087!9.22e-13!119;CL:0002032!1.76e-12!165;CL:0000837!1.76e-12!165;CL:0000763!2.33e-12!112;CL:0000049!2.33e-12!112;CL:0000988!3.41e-12!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.19e-16;33!CL:0002057;1.19e-16;33!CL:0000576;2.99e-11;48!CL:0000473;4.87e-11;39!CL:0000234;4.87e-11;39!CL:0000766;2.26e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.92e-22,42;CL:0002057,1.92e-22,42;CL:0000766,5.33e-19,72;CL:0000738,8.13e-19,136;CL:0000473,1.41e-18,48;CL:0000234,1.41e-18,48;CL:0000557,3.86e-16,67;CL:0000037,3.85e-14,168;CL:0000839,5.98e-14,66;CL:0002031,6.22e-14,120;CL:0002009,6.70e-14,61;CL:0000988,5.80e-13,177;CL:0002087,7.89e-13,115;CL:0002194,8.60e-13,59;CL:0000576,8.60e-13,59;CL:0000040,8.60e-13,59;CL:0000559,8.60e-13,59;CL:0002032,1.82e-12,161;CL:0000837,1.82e-12,161;CL:0000763,4.67e-12,108;CL:0000049,4.67e-12,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.56e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.57e-16!102;UBERON:0003061!2.57e-16!102;UBERON:0002371!9.66e-15!80;UBERON:0001474!4.22e-14!86;UBERON:0007023!5.17e-12!115;UBERON:0002193!1.65e-11!112;UBERON:0004765!1.70e-11!101;UBERON:0001434!1.70e-11!101;UBERON:0002405!1.10e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.27e-16,98;UBERON:0003061,4.27e-16,98;UBERON:0002371,1.11e-14,76;UBERON:0001474,7.83e-14,82;UBERON:0004765,3.56e-12,90;UBERON:0007023,9.80e-12,114;UBERON:0002193,1.11e-11,108;UBERON:0001434,9.33e-11,100;UBERON:0002405,6.14e-10,93 | |||
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| ||
|short_description=p1@NR4A2 | |||
}} | }} |
Latest revision as of 15:49, 17 September 2015
Short description: | p1@NR4A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NR4A2_5end |
Coexpression cluster: | C2428_Mast_CD14_Eosinophils_immature_CD19_CD4_CD8 |
Association with transcript: | 0bp_to_ENST00000339562, ENST00000421709, ENST00000424077, ENST00000426264, ENST00000539077, NM_006186, uc002tyx.3, uc002tyz.3, uc010zcf.1_5end |
EntrezGene: | NR4A2 |
HGNC: | 7981 |
UniProt: | P43354C9JWQ1C9IYM5Q6NXU0F5H4G9F1D8N6Q53EL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.92e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.92e-22 | 42 |
myeloid leukocyte | 5.33e-19 | 72 |
leukocyte | 8.13e-19 | 136 |
defensive cell | 1.41e-18 | 48 |
phagocyte | 1.41e-18 | 48 |
granulocyte monocyte progenitor cell | 3.86e-16 | 67 |
hematopoietic stem cell | 3.85e-14 | 168 |
myeloid lineage restricted progenitor cell | 5.98e-14 | 66 |
hematopoietic lineage restricted progenitor cell | 6.22e-14 | 120 |
macrophage dendritic cell progenitor | 6.70e-14 | 61 |
hematopoietic cell | 5.80e-13 | 177 |
nongranular leukocyte | 7.89e-13 | 115 |
monopoietic cell | 8.60e-13 | 59 |
monocyte | 8.60e-13 | 59 |
monoblast | 8.60e-13 | 59 |
promonocyte | 8.60e-13 | 59 |
hematopoietic oligopotent progenitor cell | 1.82e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.82e-12 | 161 |
myeloid cell | 4.67e-12 | 108 |
common myeloid progenitor | 4.67e-12 | 108 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.27e-16 | 98 |
blood island | 4.27e-16 | 98 |
bone marrow | 1.11e-14 | 76 |
bone element | 7.83e-14 | 82 |
skeletal element | 3.56e-12 | 90 |
adult organism | 9.80e-12 | 114 |
hemolymphoid system | 1.11e-11 | 108 |
skeletal system | 9.33e-11 | 100 |
immune system | 6.14e-10 | 93 |