FFCP PHASE1:Hg19::chr1:156338993..156339011,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57127 | |EntrezGene=57127 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14572 | |HGNC=14572 | ||
|TSSclassifier=strong | |||
|UniProt=F8W6Q8,F5H473,Q9H310,F8WEM6,B7Z8R8,F5GWZ4 | |UniProt=F8W6Q8,F5H473,Q9H310,F8WEM6,B7Z8R8,F5GWZ4 | ||
|association_with_transcript=0bp_to_ENST00000255013,ENST00000368246,ENST00000368247,ENST00000368249,ENST00000400992,ENST00000446171,ENST00000451864,ENST00000467375,ENST00000537040,ENST00000544720,NM_020407,NR_026549,uc001for.2,uc001fos.2,uc009wrz.2,uc010phm.1,uc010phn.1,uc010pho.1_5end | |association_with_transcript=0bp_to_ENST00000255013,ENST00000368246,ENST00000368247,ENST00000368249,ENST00000400992,ENST00000446171,ENST00000451864,ENST00000467375,ENST00000537040,ENST00000544720,NM_020407,NR_026549,uc001for.2,uc001fos.2,uc009wrz.2,uc010phm.1,uc010phn.1,uc010pho.1_5end | ||
|cluster_id=chr1:156338993..156339011,+ | |||
|coexpression_cluster_id=C258 | |||
|description=CAGE_peak_1_at_RHBG_5end | |description=CAGE_peak_1_at_RHBG_5end | ||
|id=chr1:156338993..156339011,+ | |id=chr1:156338993..156339011,+ | ||
|ontology_enrichment_celltype=CL:0002322!6.65e-08!5;CL:0000181!4.35e-07!12;CL:0000417!4.35e-07!12;CL:0000668!4.35e-07!12;CL:0000414!4.35e-07!12;CL:0000412!4.35e-07!12;CL:0000182!4.35e-07!12 | |ontology_enrichment_celltype=CL:0002322!6.65e-08!5;CL:0000181!4.35e-07!12;CL:0000417!4.35e-07!12;CL:0000668!4.35e-07!12;CL:0000414!4.35e-07!12;CL:0000412!4.35e-07!12;CL:0000182!4.35e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;4.84e-14;12!CL:0000540;2.51e-07;6!CL:0000404;2.51e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.14e-14,12;CL:0000540,2.37e-07,6;CL:0000031,2.37e-07,6;CL:0000404,2.37e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.51e-15;3!UBERON:0004161;5.96e-11;11!UBERON:0009497;3.25e-09;13!UBERON:0003104;8.11e-09;31!CL:0000031;2.51e-07;6 | |||
|ontology_enrichment_disease=DOID:305!9.36e-14!106;DOID:0050687!1.83e-12!143;DOID:5093!1.06e-07!4;DOID:1612!1.06e-07!4;DOID:299!8.03e-07!25 | |ontology_enrichment_disease=DOID:305!9.36e-14!106;DOID:0050687!1.83e-12!143;DOID:5093!1.06e-07!4;DOID:1612!1.06e-07!4;DOID:299!8.03e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:5093;9.03e-11;4!DOID:1612;9.03e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,4.65e-11,4;DOID:1612,4.65e-11,4 | |||
|ontology_enrichment_uberon=UBERON:0004733!2.52e-10!12;UBERON:0002028!2.52e-10!12;UBERON:0007277!2.52e-10!12;UBERON:0004732!2.25e-09!13;UBERON:0005911!2.44e-09!82;UBERON:0009497!3.08e-09!25;UBERON:0000015!3.08e-09!25;UBERON:0002423!3.08e-09!25;UBERON:0006235!3.08e-09!25;UBERON:0004161!3.08e-09!25;UBERON:0003929!2.06e-08!54;UBERON:0003076!7.40e-08!15;UBERON:0003057!7.40e-08!15;UBERON:0008835!1.01e-07!22;UBERON:0003894!1.01e-07!22;UBERON:0007499!1.07e-07!25;UBERON:0009856!2.74e-07!26;UBERON:0009854!2.87e-07!23;UBERON:0004921!5.02e-07!129;UBERON:0004185!5.02e-07!129 | |ontology_enrichment_uberon=UBERON:0004733!2.52e-10!12;UBERON:0002028!2.52e-10!12;UBERON:0007277!2.52e-10!12;UBERON:0004732!2.25e-09!13;UBERON:0005911!2.44e-09!82;UBERON:0009497!3.08e-09!25;UBERON:0000015!3.08e-09!25;UBERON:0002423!3.08e-09!25;UBERON:0006235!3.08e-09!25;UBERON:0004161!3.08e-09!25;UBERON:0003929!2.06e-08!54;UBERON:0003076!7.40e-08!15;UBERON:0003057!7.40e-08!15;UBERON:0008835!1.01e-07!22;UBERON:0003894!1.01e-07!22;UBERON:0007499!1.07e-07!25;UBERON:0009856!2.74e-07!26;UBERON:0009854!2.87e-07!23;UBERON:0004921!5.02e-07!129;UBERON:0004185!5.02e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.91e-11;19!UBERON:0006925;1.91e-11;19!UBERON:0002423;6.99e-11;25!UBERON:0002365;2.68e-08;31!UBERON:0002330;2.68e-08;31!UBERON:0002037;5.54e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.02e-11,19;UBERON:0006925,2.02e-11,19;UBERON:0008836,2.02e-11,19;UBERON:0009497,7.35e-11,25;UBERON:0000015,7.35e-11,25;UBERON:0002423,7.35e-11,25;UBERON:0006235,7.35e-11,25;UBERON:0004161,7.35e-11,25;UBERON:0008835,9.95e-10,22;UBERON:0003894,9.95e-10,22;UBERON:0009854,2.91e-09,23;UBERON:0002365,1.42e-08,31;UBERON:0002330,1.42e-08,31;UBERON:0007499,1.92e-08,25;UBERON:0003929,2.90e-08,54;UBERON:0009856,4.42e-08,26;UBERON:0002037,5.54e-08,6;UBERON:0006215,5.54e-08,6;UBERON:0005172,6.59e-07,54;UBERON:0005173,6.59e-07,54;UBERON:0005911,8.38e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68507104770311,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.662648841607426,0.580969714347592,0.518305275076852,0.252320850875628,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,2.36315962672562,0,7.74827162821615,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95102198979638,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,3.709476419318,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0481834334015,0,0,1.7737206141467,0,0,0,0,0,0,0,0,0,0.534120355637366,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,1.26675244876796,0,0,1.25966373927138,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,1.82299432759663,0.174919999992391,0,0,0.254253650292766,0.472775363535873,0.689486746482929,0,0,0,0,22.8872604475625,13.8224074914031,26.5992857058193,0.219385397153973,0,0.139423744278603,0.307801034015188,0,0.69169171316418,0.179515288819544,1.08647371922008,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0.163232808159148,1.41353071433941,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0.789168805698781,3.62972148145992,0,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0,0.0870592065804026,0,0,0,0,0,1.16386819786103,0,0,0,0,0,1.36885967914362,0.320635281006135,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,121.155787508552,38.6825425128468,33.2135909276101,40.3073192248026,0.196854963029498,0,0,0,3.05430982083536,1.78801267576404,1.24632101408756,0,1.5476039091159,0,0,9.45668487590378,7.60591527957473,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879313402068495,1.32506888912221,0.258565912723101,0.66116300871345,0,1.40963004463334,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0,0.573409195690071,1.44207766997908,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431299245586727,0,2.18419276384028,0,0,0,0,0,0,0.80057074828547,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0.161475645631851,0,0.196295437002051,0,0,0,0,0,0,3.08362346231955,0.20170506870352,0,0,0,0.147856086217045,0.0675375846183947,0,0,0.126831620387814,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0.472775363535873,0.111231401892069,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,2.76503864725637,0,0,0,0.423387050190929,0,0,0,0.223710863595585,0.098150233615243,0,0,0,0,1.45713297917742,0,0.795803100645473,0.356760272332706,0.11294608203896,0,0.603851374266694,0.231522474323834,12.4578949487256,0,0,0,0,0,0,0,0,0,0,1.07132363163395,0,0,0,0,0,0,0,0,5.290268405154,0,0,0,0,0,3.04076402427449,0.407955318967927,0,0,0,0.303114792872958,1.07185652062471,0,0,0.639701945702943,0,0.0645889098360061,0,0,0,0.202117188958219,0.870866991587845,0.684466602170562,0.80822463617505,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68507104770311,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.662648841607426,0.580969714347592,0.518305275076852,0.252320850875628,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,2.36315962672562,0,7.74827162821615,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95102198979638,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,3.709476419318,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0481834334015,0,0,1.7737206141467,0,0,0,0,0,0,0,0,0,0.534120355637366,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,1.26675244876796,0,0,1.25966373927138,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,1.82299432759663,0.174919999992391,0,0,0.254253650292766,0.472775363535873,0.689486746482929,0,0,0,0,22.8872604475625,13.8224074914031,26.5992857058193,0.219385397153973,0,0.139423744278603,0.307801034015188,0,0.69169171316418,0.179515288819544,1.08647371922008,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0.163232808159148,1.41353071433941,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0.789168805698781,3.62972148145992,0,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0,0.0870592065804026,0,0,0,0,0,1.16386819786103,0,0,0,0,0,1.36885967914362,0.320635281006135,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,121.155787508552,38.6825425128468,33.2135909276101,40.3073192248026,0.196854963029498,0,0,0,3.05430982083536,1.78801267576404,1.24632101408756,0,1.5476039091159,0,0,9.45668487590378,7.60591527957473,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879313402068495,1.32506888912221,0.258565912723101,0.66116300871345,0,1.40963004463334,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0,0.573409195690071,1.44207766997908,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431299245586727,0,2.18419276384028,0,0,0,0,0,0,0.80057074828547,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0.161475645631851,0,0.196295437002051,0,0,0,0,0,0,3.08362346231955,0.20170506870352,0,0,0,0.147856086217045,0.0675375846183947,0,0,0.126831620387814,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0.472775363535873,0.111231401892069,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,2.76503864725637,0,0,0,0.423387050190929,0,0,0,0.223710863595585,0.098150233615243,0,0,0,0,1.45713297917742,0,0.795803100645473,0.356760272332706,0.11294608203896,0,0.603851374266694,0.231522474323834,12.4578949487256,0,0,0,0,0,0,0,0,0,0,1.07132363163395,0,0,0,0,0,0,0,0,5.290268405154,0,0,0,0,0,3.04076402427449,0.407955318967927,0,0,0,0.303114792872958,1.07185652062471,0,0,0.639701945702943,0,0.0645889098360061,0,0,0,0.202117188958219,0.870866991587845,0.684466602170562,0.80822463617505,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@RHBG | |short_description=p1@RHBG | ||
}} | }} |
Latest revision as of 15:48, 17 September 2015
Short description: | p1@RHBG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RHBG_5end |
Coexpression cluster: | C258_hepatoblastoma_hepatocellular_signet_colon_Intestinal_Prostate_gastric |
Association with transcript: | 0bp_to_ENST00000255013, ENST00000368246, ENST00000368247, ENST00000368249, ENST00000400992, ENST00000446171, ENST00000451864, ENST00000467375, ENST00000537040, ENST00000544720, NM_020407, NR_026549, uc001for.2, uc001fos.2, uc009wrz.2, uc010phm.1, uc010phn.1, uc010pho.1_5end |
EntrezGene: | RHBG |
HGNC: | 14572 |
UniProt: | F8W6Q8F5H473Q9H310F8WEM6B7Z8R8F5GWZ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.14e-14 | 12 |
neuron | 2.37e-07 | 6 |
neuroblast | 2.37e-07 | 6 |
electrically signaling cell | 2.37e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
liver | 2.02e-11 | 19 |
digestive gland | 2.02e-11 | 19 |
liver bud | 2.02e-11 | 19 |
epithelium of foregut-midgut junction | 7.35e-11 | 25 |
anatomical boundary | 7.35e-11 | 25 |
hepatobiliary system | 7.35e-11 | 25 |
foregut-midgut junction | 7.35e-11 | 25 |
septum transversum | 7.35e-11 | 25 |
hepatic diverticulum | 9.95e-10 | 22 |
liver primordium | 9.95e-10 | 22 |
digestive tract diverticulum | 2.91e-09 | 23 |
exocrine gland | 1.42e-08 | 31 |
exocrine system | 1.42e-08 | 31 |
epithelial sac | 1.92e-08 | 25 |
gut epithelium | 2.90e-08 | 54 |
sac | 4.42e-08 | 26 |
cerebellum | 5.54e-08 | 6 |
rhombic lip | 5.54e-08 | 6 |
abdomen element | 6.59e-07 | 54 |
abdominal segment element | 6.59e-07 | 54 |
endo-epithelium | 8.38e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 4.65e-11 | 4 |
breast cancer | 4.65e-11 | 4 |