FFCP PHASE1:Hg19::chr3:196065414..196065425,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:196065414..196065425,-
|short_description=p3@TM4SF19
|description=CAGE_peak_3_at_TM4SF19_5end
|association_with_transcript=-40bp_to_ENST00000454715_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=116211 | |EntrezGene=116211 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25167 | |HGNC=25167 | ||
|TSSclassifier=strong | |||
|UniProt=E9PH22 | |UniProt=E9PH22 | ||
|association_with_transcript=-40bp_to_ENST00000454715_5end | |||
|cluster_id=chr3:196065414..196065425,- | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_3_at_TM4SF19_5end | |||
|id=chr3:196065414..196065425,- | |||
|ontology_enrichment_celltype=CL:0002009!4.63e-38!65;CL:0002194!2.96e-36!63;CL:0000576!2.96e-36!63;CL:0000040!2.96e-36!63;CL:0000559!2.96e-36!63;CL:0000557!2.77e-33!71;CL:0000766!3.78e-31!76;CL:0000839!7.36e-31!70;CL:0000860!9.52e-31!45;CL:0002057!3.75e-29!42;CL:0002087!2.97e-22!119;CL:0002031!1.46e-21!124;CL:0000763!5.59e-21!112;CL:0000049!5.59e-21!112;CL:0000738!3.78e-20!140;CL:0002032!4.57e-16!165;CL:0000837!4.57e-16!165;CL:0000037!2.86e-15!172;CL:0000566!2.86e-15!172;CL:0000988!1.48e-14!182;CL:0000063!6.97e-09!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.15e-74;33!CL:0002057;4.15e-74;33!CL:0000473;4.01e-72;39!CL:0000234;4.01e-72;39!CL:0000576;4.96e-38;48!CL:0000766;3.05e-25;69!CL:0000235;1.69e-14;6!CL:0002087;1.02e-13;104!CL:0000763;1.18e-13;100!CL:0000738;4.26e-10;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.88e-80,48;CL:0000234,5.88e-80,48;CL:0002009,1.39e-75,61;CL:0002194,4.02e-74,59;CL:0000576,4.02e-74,59;CL:0000040,4.02e-74,59;CL:0000559,4.02e-74,59;CL:0000557,4.51e-68,67;CL:0000860,7.08e-67,42;CL:0002057,7.08e-67,42;CL:0000839,2.13e-65,66;CL:0000766,2.98e-59,72;CL:0002031,4.13e-45,120;CL:0002087,5.05e-45,115;CL:0000763,7.01e-39,108;CL:0000049,7.01e-39,108;CL:0000738,1.22e-38,136;CL:0002032,4.34e-31,161;CL:0000837,4.34e-31,161;CL:0000037,2.24e-29,168;CL:0000988,2.27e-27,177;CL:0000235,3.19e-14,6;CL:0000219,1.90e-10,386;CL:0000134,4.04e-10,354;CL:0002320,1.00e-09,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.08e-50;42!CL:0000049;3.70e-12;108 | |||
|ontology_enrichment_disease=DOID:305!1.65e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.27e-29!80;UBERON:0001474!1.73e-25!86;UBERON:0002390!5.15e-23!102;UBERON:0003061!5.15e-23!102;UBERON:0002193!4.20e-21!112;UBERON:0002405!3.26e-20!115;UBERON:0004765!3.53e-20!101;UBERON:0001434!3.53e-20!101;UBERON:0002204!1.32e-08!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.33e-59,76;UBERON:0001474,4.80e-54,82;UBERON:0004765,1.87e-48,90;UBERON:0002405,1.32e-46,93;UBERON:0002390,9.06e-44,98;UBERON:0003061,9.06e-44,98;UBERON:0001434,1.03e-42,100;UBERON:0002193,7.01e-39,108;UBERON:0002204,6.55e-22,167;UBERON:0003081,1.52e-17,203;UBERON:0000926,3.79e-10,315;UBERON:0004120,3.79e-10,315;UBERON:0006603,3.79e-10,315;UBERON:0002384,3.43e-09,371 | |||
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| ||
|short_description=p3@TM4SF19 | |||
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Latest revision as of 15:25, 17 September 2015
Short description: | p3@TM4SF19 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TM4SF19_5end |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | -40bp_to_ENST00000454715_5end |
EntrezGene: | TM4SF19 |
HGNC: | 25167 |
UniProt: | E9PH22 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 5.88e-80 | 48 |
phagocyte | 5.88e-80 | 48 |
macrophage dendritic cell progenitor | 1.39e-75 | 61 |
monopoietic cell | 4.02e-74 | 59 |
monocyte | 4.02e-74 | 59 |
monoblast | 4.02e-74 | 59 |
promonocyte | 4.02e-74 | 59 |
granulocyte monocyte progenitor cell | 4.51e-68 | 67 |
classical monocyte | 7.08e-67 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.08e-67 | 42 |
myeloid lineage restricted progenitor cell | 2.13e-65 | 66 |
myeloid leukocyte | 2.98e-59 | 72 |
hematopoietic lineage restricted progenitor cell | 4.13e-45 | 120 |
nongranular leukocyte | 5.05e-45 | 115 |
myeloid cell | 7.01e-39 | 108 |
common myeloid progenitor | 7.01e-39 | 108 |
leukocyte | 1.22e-38 | 136 |
hematopoietic oligopotent progenitor cell | 4.34e-31 | 161 |
hematopoietic multipotent progenitor cell | 4.34e-31 | 161 |
hematopoietic stem cell | 2.24e-29 | 168 |
hematopoietic cell | 2.27e-27 | 177 |
macrophage | 3.19e-14 | 6 |
motile cell | 1.90e-10 | 386 |
mesenchymal cell | 4.04e-10 | 354 |
connective tissue cell | 1.00e-09 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.33e-59 | 76 |
bone element | 4.80e-54 | 82 |
skeletal element | 1.87e-48 | 90 |
immune system | 1.32e-46 | 93 |
hematopoietic system | 9.06e-44 | 98 |
blood island | 9.06e-44 | 98 |
skeletal system | 1.03e-42 | 100 |
hemolymphoid system | 7.01e-39 | 108 |
musculoskeletal system | 6.55e-22 | 167 |
lateral plate mesoderm | 1.52e-17 | 203 |
mesoderm | 3.79e-10 | 315 |
mesoderm-derived structure | 3.79e-10 | 315 |
presumptive mesoderm | 3.79e-10 | 315 |
connective tissue | 3.43e-09 | 371 |