FFCP PHASE1:Hg19::chr3:196014520..196014629,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5130 | |EntrezGene=5130 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8754 | |HGNC=8754 | ||
|TSSclassifier=strong | |||
|UniProt=P49585,C9J050,B4E322,F8WBU2,C9J2E1,F8WAZ5 | |UniProt=P49585,C9J050,B4E322,F8WBU2,C9J2E1,F8WAZ5 | ||
|association_with_transcript=0bp_to_ENST00000292823,ENST00000411591,ENST00000416798,ENST00000438634,ENST00000441879,ENST00000444822,ENST00000460677,ENST00000473978,ENST00000491544,NM_005017,uc003fwg.2,uc003fwh.2_5end | |association_with_transcript=0bp_to_ENST00000292823,ENST00000411591,ENST00000416798,ENST00000438634,ENST00000441879,ENST00000444822,ENST00000460677,ENST00000473978,ENST00000491544,NM_005017,uc003fwg.2,uc003fwh.2_5end | ||
|cluster_id=chr3:196014520..196014629,- | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_1_at_PCYT1A_5end | |description=CAGE_peak_1_at_PCYT1A_5end | ||
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|ontology_enrichment_celltype=CL:0002057!1.01e-20!42;CL:0000766!1.30e-20!76;CL:0000557!7.78e-19!71;CL:0002009!3.21e-18!65;CL:0000860!5.89e-18!45;CL:0000839!2.10e-17!70;CL:0002194!4.07e-17!63;CL:0000576!4.07e-17!63;CL:0000040!4.07e-17!63;CL:0000559!4.07e-17!63;CL:0000048!3.42e-11!430;CL:0000723!6.35e-11!436;CL:0000763!6.69e-10!112;CL:0000049!6.69e-10!112;CL:0002371!7.88e-09!591;CL:0000034!8.16e-09!444;CL:0000134!3.39e-08!358;CL:0002320!1.13e-07!365;CL:0000738!2.99e-07!140;CL:0000144!5.19e-07!625 | |ontology_enrichment_celltype=CL:0002057!1.01e-20!42;CL:0000766!1.30e-20!76;CL:0000557!7.78e-19!71;CL:0002009!3.21e-18!65;CL:0000860!5.89e-18!45;CL:0000839!2.10e-17!70;CL:0002194!4.07e-17!63;CL:0000576!4.07e-17!63;CL:0000040!4.07e-17!63;CL:0000559!4.07e-17!63;CL:0000048!3.42e-11!430;CL:0000723!6.35e-11!436;CL:0000763!6.69e-10!112;CL:0000049!6.69e-10!112;CL:0002371!7.88e-09!591;CL:0000034!8.16e-09!444;CL:0000134!3.39e-08!358;CL:0002320!1.13e-07!365;CL:0000738!2.99e-07!140;CL:0000144!5.19e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.59e-18;33!CL:0002057;1.59e-18;33!CL:0000473;2.30e-16;39!CL:0000234;2.30e-16;39!CL:0000576;1.30e-12;48!CL:0000766;1.87e-10;69 | |ontology_enrichment_celltype_v019=CL:0000860;1.59e-18;33!CL:0002057;1.59e-18;33!CL:0000473;2.30e-16;39!CL:0000234;2.30e-16;39!CL:0000576;1.30e-12;48!CL:0000766;1.87e-10;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.10e-23,72;CL:0000473,9.95e-22,48;CL:0000234,9.95e-22,48;CL:0000557,3.33e-21,67;CL:0000860,1.01e-20,42;CL:0002057,1.01e-20,42;CL:0002009,1.08e-20,61;CL:0000839,1.16e-19,66;CL:0002194,1.57e-19,59;CL:0000576,1.57e-19,59;CL:0000040,1.57e-19,59;CL:0000559,1.57e-19,59;CL:0000048,1.25e-11,427;CL:0000723,2.36e-11,433;CL:0000763,5.61e-11,108;CL:0000049,5.61e-11,108;CL:0000034,3.41e-09,441;CL:0000134,1.72e-08,354;CL:0000738,5.29e-08,136;CL:0002320,5.94e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.65e-15;42 | |ontology_enrichment_development_v019=CL:0002057;2.65e-15;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!6.56e-19!216;UBERON:0002204!1.01e-18!167;UBERON:0002371!2.99e-17!80;UBERON:0001474!2.05e-15!86;UBERON:0004765!4.26e-15!101;UBERON:0001434!4.26e-15!101;UBERON:0002390!6.45e-15!102;UBERON:0003061!6.45e-15!102;UBERON:0002193!1.29e-14!112;UBERON:0002405!5.95e-11!115;UBERON:0001009!1.84e-10!113;UBERON:0004535!1.78e-09!110;UBERON:0004872!6.16e-09!84;UBERON:0001981!6.36e-09!60;UBERON:0007500!6.36e-09!60;UBERON:0004537!6.36e-09!60;UBERON:0006965!6.36e-09!60;UBERON:0001637!6.58e-09!42;UBERON:0003509!6.58e-09!42;UBERON:0004572!6.58e-09!42;UBERON:0000926!7.41e-09!448;UBERON:0004120!7.41e-09!448;UBERON:0006603!7.41e-09!448;UBERON:0000055!1.34e-08!69;UBERON:0002049!2.78e-08!79;UBERON:0007798!2.78e-08!79;UBERON:0004573!1.14e-07!33;UBERON:0004571!1.14e-07!33 | |ontology_enrichment_uberon=UBERON:0003081!6.56e-19!216;UBERON:0002204!1.01e-18!167;UBERON:0002371!2.99e-17!80;UBERON:0001474!2.05e-15!86;UBERON:0004765!4.26e-15!101;UBERON:0001434!4.26e-15!101;UBERON:0002390!6.45e-15!102;UBERON:0003061!6.45e-15!102;UBERON:0002193!1.29e-14!112;UBERON:0002405!5.95e-11!115;UBERON:0001009!1.84e-10!113;UBERON:0004535!1.78e-09!110;UBERON:0004872!6.16e-09!84;UBERON:0001981!6.36e-09!60;UBERON:0007500!6.36e-09!60;UBERON:0004537!6.36e-09!60;UBERON:0006965!6.36e-09!60;UBERON:0001637!6.58e-09!42;UBERON:0003509!6.58e-09!42;UBERON:0004572!6.58e-09!42;UBERON:0000926!7.41e-09!448;UBERON:0004120!7.41e-09!448;UBERON:0006603!7.41e-09!448;UBERON:0000055!1.34e-08!69;UBERON:0002049!2.78e-08!79;UBERON:0007798!2.78e-08!79;UBERON:0004573!1.14e-07!33;UBERON:0004571!1.14e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;6.31e-07;42!UBERON:0003509;6.31e-07;42!UBERON:0004572;6.31e-07;42!UBERON:0004573;8.37e-07;33!UBERON:0004571;8.37e-07;33 | |ontology_enrichment_uberon_v019=UBERON:0001637;6.31e-07;42!UBERON:0003509;6.31e-07;42!UBERON:0004572;6.31e-07;42!UBERON:0004573;8.37e-07;33!UBERON:0004571;8.37e-07;33 | ||
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| ||
|short_description=p1@PCYT1A | |short_description=p1@PCYT1A | ||
}} | }} |
Latest revision as of 15:15, 17 September 2015
Short description: | p1@PCYT1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCYT1A_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000292823, ENST00000411591, ENST00000416798, ENST00000438634, ENST00000441879, ENST00000444822, ENST00000460677, ENST00000473978, ENST00000491544, NM_005017, uc003fwg.2, uc003fwh.2_5end |
EntrezGene: | PCYT1A |
HGNC: | 8754 |
UniProt: | P49585C9J050B4E322F8WBU2C9J2E1F8WAZ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.10e-23 | 72 |
defensive cell | 9.95e-22 | 48 |
phagocyte | 9.95e-22 | 48 |
granulocyte monocyte progenitor cell | 3.33e-21 | 67 |
classical monocyte | 1.01e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.01e-20 | 42 |
macrophage dendritic cell progenitor | 1.08e-20 | 61 |
myeloid lineage restricted progenitor cell | 1.16e-19 | 66 |
monopoietic cell | 1.57e-19 | 59 |
monocyte | 1.57e-19 | 59 |
monoblast | 1.57e-19 | 59 |
promonocyte | 1.57e-19 | 59 |
multi fate stem cell | 1.25e-11 | 427 |
somatic stem cell | 2.36e-11 | 433 |
myeloid cell | 5.61e-11 | 108 |
common myeloid progenitor | 5.61e-11 | 108 |
stem cell | 3.41e-09 | 441 |
mesenchymal cell | 1.72e-08 | 354 |
leukocyte | 5.29e-08 | 136 |
connective tissue cell | 5.94e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 9.57e-24 | 203 |
mesoderm | 2.10e-22 | 315 |
mesoderm-derived structure | 2.10e-22 | 315 |
presumptive mesoderm | 2.10e-22 | 315 |
musculoskeletal system | 8.32e-20 | 167 |
bone marrow | 2.79e-19 | 76 |
skeletal element | 1.52e-17 | 90 |
bone element | 3.46e-17 | 82 |
immune system | 8.44e-17 | 93 |
hematopoietic system | 1.88e-16 | 98 |
blood island | 1.88e-16 | 98 |
skeletal system | 3.45e-16 | 100 |
hemolymphoid system | 4.92e-16 | 108 |
circulatory system | 1.39e-10 | 112 |
cardiovascular system | 1.37e-09 | 109 |
epithelial tube open at both ends | 4.20e-09 | 59 |
blood vessel | 4.20e-09 | 59 |
blood vasculature | 4.20e-09 | 59 |
vascular cord | 4.20e-09 | 59 |
splanchnic layer of lateral plate mesoderm | 4.51e-09 | 83 |
artery | 6.58e-09 | 42 |
arterial blood vessel | 6.58e-09 | 42 |
arterial system | 6.58e-09 | 42 |
vessel | 9.42e-09 | 68 |
vasculature | 2.05e-08 | 78 |
vascular system | 2.05e-08 | 78 |
systemic artery | 1.14e-07 | 33 |
systemic arterial system | 1.14e-07 | 33 |
connective tissue | 5.59e-07 | 371 |