FFCP PHASE1:Hg19::chr13:48877895..48877929,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5925 | |EntrezGene=5925 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9884 | |HGNC=9884 | ||
|TSSclassifier=strong | |||
|UniProt=P06400,Q92728 | |UniProt=P06400,Q92728 | ||
|association_with_transcript=0bp_to_ENST00000267163,ENST00000467505_5end | |association_with_transcript=0bp_to_ENST00000267163,ENST00000467505_5end | ||
|cluster_id=chr13:48877895..48877929,+ | |||
|description=CAGE_peak_3_at_RB1_5end | |description=CAGE_peak_3_at_RB1_5end | ||
|id=chr13:48877895..48877929,+ | |id=chr13:48877895..48877929,+ | ||
|ontology_enrichment_celltype=CL:0000738!3.31e-25!140;CL:0002031!4.82e-22!124;CL:0002087!8.51e-22!119;CL:0000037!3.80e-19!172;CL:0000566!3.80e-19!172;CL:0002032!1.45e-17!165;CL:0000837!1.45e-17!165;CL:0000988!5.42e-15!182;CL:0000766!6.70e-13!76;CL:0000839!4.11e-12!70;CL:0000838!2.72e-11!52;CL:0000557!4.11e-11!71;CL:0000542!4.83e-11!53;CL:0000051!4.83e-11!53;CL:0002194!3.20e-10!63;CL:0000576!3.20e-10!63;CL:0000040!3.20e-10!63;CL:0000559!3.20e-10!63;CL:0002057!4.40e-10!42;CL:0002009!2.33e-09!65;CL:0000860!1.33e-08!45;CL:0000763!6.26e-08!112;CL:0000049!6.26e-08!112;CL:0000945!7.79e-07!24;CL:0000826!7.79e-07!24 | |ontology_enrichment_celltype=CL:0000738!3.31e-25!140;CL:0002031!4.82e-22!124;CL:0002087!8.51e-22!119;CL:0000037!3.80e-19!172;CL:0000566!3.80e-19!172;CL:0002032!1.45e-17!165;CL:0000837!1.45e-17!165;CL:0000988!5.42e-15!182;CL:0000766!6.70e-13!76;CL:0000839!4.11e-12!70;CL:0000838!2.72e-11!52;CL:0000557!4.11e-11!71;CL:0000542!4.83e-11!53;CL:0000051!4.83e-11!53;CL:0002194!3.20e-10!63;CL:0000576!3.20e-10!63;CL:0000040!3.20e-10!63;CL:0000559!3.20e-10!63;CL:0002057!4.40e-10!42;CL:0002009!2.33e-09!65;CL:0000860!1.33e-08!45;CL:0000763!6.26e-08!112;CL:0000049!6.26e-08!112;CL:0000945!7.79e-07!24;CL:0000826!7.79e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.68e-09;33!CL:0002057;3.68e-09;33!CL:0000473;2.38e-08;39!CL:0000234;2.38e-08;39!CL:0000576;9.10e-08;48!CL:0002087;3.83e-07;104!CL:0000542;5.58e-07;53!CL:0000766;8.77e-07;69 | |ontology_enrichment_celltype_v019=CL:0000860;3.68e-09;33!CL:0002057;3.68e-09;33!CL:0000473;2.38e-08;39!CL:0000234;2.38e-08;39!CL:0000576;9.10e-08;48!CL:0002087;3.83e-07;104!CL:0000542;5.58e-07;53!CL:0000766;8.77e-07;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.27e-26,136;CL:0002031,4.90e-23,120;CL:0002087,9.96e-23,115;CL:0000037,1.05e-19,168;CL:0002032,4.19e-18,161;CL:0000837,4.19e-18,161;CL:0000988,8.95e-16,177;CL:0000766,9.40e-14,72;CL:0000839,5.61e-13,66;CL:0000557,5.64e-12,67;CL:0000838,2.52e-11,52;CL:0000542,4.47e-11,53;CL:0000051,4.47e-11,53;CL:0002194,5.01e-11,59;CL:0000576,5.01e-11,59;CL:0000040,5.01e-11,59;CL:0000559,5.01e-11,59;CL:0000473,2.63e-10,48;CL:0000234,2.63e-10,48;CL:0002009,3.77e-10,61;CL:0000860,4.10e-10,42;CL:0002057,4.10e-10,42;CL:0000763,2.75e-08,108;CL:0000049,2.75e-08,108;CL:0000945,7.46e-07,24;CL:0000826,7.46e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;8.10e-08;42!CL:0000051;5.58e-07;53 | |ontology_enrichment_development_v019=CL:0002057;8.10e-08;42!CL:0000051;5.58e-07;53 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.00e-13!57;UBERON:0005068!8.00e-13!57;UBERON:0006241!8.00e-13!57;UBERON:0007135!8.00e-13!57;UBERON:0007023!8.22e-12!115;UBERON:0003080!1.08e-11!42;UBERON:0002780!3.54e-11!41;UBERON:0001890!3.54e-11!41;UBERON:0006240!3.54e-11!41;UBERON:0000955!4.26e-11!69;UBERON:0006238!4.26e-11!69;UBERON:0001017!5.02e-11!82;UBERON:0002616!8.36e-11!59;UBERON:0002405!9.48e-11!115;UBERON:0000073!6.52e-10!94;UBERON:0001016!6.52e-10!94;UBERON:0005743!6.99e-10!86;UBERON:0002020!7.84e-10!34;UBERON:0003528!7.84e-10!34;UBERON:0001893!9.07e-10!34;UBERON:0002193!9.93e-10!112;UBERON:0002791!1.24e-09!33;UBERON:0002390!1.48e-09!102;UBERON:0003061!1.48e-09!102;UBERON:0001869!4.20e-09!32;UBERON:0002371!4.63e-08!80;UBERON:0001474!1.24e-07!86;UBERON:0003075!1.82e-07!86;UBERON:0007284!1.82e-07!86;UBERON:0002346!2.05e-07!90;UBERON:0003056!6.91e-07!61 | |ontology_enrichment_uberon=UBERON:0001049!8.00e-13!57;UBERON:0005068!8.00e-13!57;UBERON:0006241!8.00e-13!57;UBERON:0007135!8.00e-13!57;UBERON:0007023!8.22e-12!115;UBERON:0003080!1.08e-11!42;UBERON:0002780!3.54e-11!41;UBERON:0001890!3.54e-11!41;UBERON:0006240!3.54e-11!41;UBERON:0000955!4.26e-11!69;UBERON:0006238!4.26e-11!69;UBERON:0001017!5.02e-11!82;UBERON:0002616!8.36e-11!59;UBERON:0002405!9.48e-11!115;UBERON:0000073!6.52e-10!94;UBERON:0001016!6.52e-10!94;UBERON:0005743!6.99e-10!86;UBERON:0002020!7.84e-10!34;UBERON:0003528!7.84e-10!34;UBERON:0001893!9.07e-10!34;UBERON:0002193!9.93e-10!112;UBERON:0002791!1.24e-09!33;UBERON:0002390!1.48e-09!102;UBERON:0003061!1.48e-09!102;UBERON:0001869!4.20e-09!32;UBERON:0002371!4.63e-08!80;UBERON:0001474!1.24e-07!86;UBERON:0003075!1.82e-07!86;UBERON:0007284!1.82e-07!86;UBERON:0002346!2.05e-07!90;UBERON:0003056!6.91e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.01e-08;41!UBERON:0001890;1.01e-08;41!UBERON:0002791;1.70e-08;32!UBERON:0003528;2.91e-08;34!UBERON:0002020;2.91e-08;34!UBERON:0001869;4.19e-08;32!UBERON:0001893;1.03e-07;34!UBERON:0000073;8.62e-07;53!UBERON:0002616;8.62e-07;53 | |ontology_enrichment_uberon_v019=UBERON:0002780;1.01e-08;41!UBERON:0001890;1.01e-08;41!UBERON:0002791;1.70e-08;32!UBERON:0003528;2.91e-08;34!UBERON:0002020;2.91e-08;34!UBERON:0001869;4.19e-08;32!UBERON:0001893;1.03e-07;34!UBERON:0000073;8.62e-07;53!UBERON:0002616;8.62e-07;53 | ||
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| ||
|short_description=p3@RB1 | |short_description=p3@RB1 | ||
}} | }} |
Latest revision as of 15:15, 17 September 2015
Short description: | p3@RB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000267163, ENST00000467505_5end |
EntrezGene: | RB1 |
HGNC: | 9884 |
UniProt: | P06400Q92728 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.27e-26 | 136 |
hematopoietic lineage restricted progenitor cell | 4.90e-23 | 120 |
nongranular leukocyte | 9.96e-23 | 115 |
hematopoietic stem cell | 1.05e-19 | 168 |
hematopoietic oligopotent progenitor cell | 4.19e-18 | 161 |
hematopoietic multipotent progenitor cell | 4.19e-18 | 161 |
hematopoietic cell | 8.95e-16 | 177 |
myeloid leukocyte | 9.40e-14 | 72 |
myeloid lineage restricted progenitor cell | 5.61e-13 | 66 |
granulocyte monocyte progenitor cell | 5.64e-12 | 67 |
lymphoid lineage restricted progenitor cell | 2.52e-11 | 52 |
lymphocyte | 4.47e-11 | 53 |
common lymphoid progenitor | 4.47e-11 | 53 |
monopoietic cell | 5.01e-11 | 59 |
monocyte | 5.01e-11 | 59 |
monoblast | 5.01e-11 | 59 |
promonocyte | 5.01e-11 | 59 |
defensive cell | 2.63e-10 | 48 |
phagocyte | 2.63e-10 | 48 |
macrophage dendritic cell progenitor | 3.77e-10 | 61 |
classical monocyte | 4.10e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.10e-10 | 42 |
myeloid cell | 2.75e-08 | 108 |
common myeloid progenitor | 2.75e-08 | 108 |
lymphocyte of B lineage | 7.46e-07 | 24 |
pro-B cell | 7.46e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.79e-12 | 56 |
neural rod | 2.79e-12 | 56 |
future spinal cord | 2.79e-12 | 56 |
neural keel | 2.79e-12 | 56 |
adult organism | 1.49e-11 | 114 |
regional part of forebrain | 4.31e-11 | 41 |
forebrain | 4.31e-11 | 41 |
anterior neural tube | 4.31e-11 | 41 |
future forebrain | 4.31e-11 | 41 |
regional part of nervous system | 9.12e-11 | 53 |
regional part of brain | 9.12e-11 | 53 |
immune system | 1.22e-10 | 93 |
brain | 1.29e-10 | 68 |
future brain | 1.29e-10 | 68 |
central nervous system | 1.48e-10 | 81 |
nervous system | 1.57e-10 | 89 |
hemolymphoid system | 2.56e-10 | 108 |
hematopoietic system | 2.66e-10 | 98 |
blood island | 2.66e-10 | 98 |
brain grey matter | 9.69e-10 | 34 |
gray matter | 9.69e-10 | 34 |
telencephalon | 1.12e-09 | 34 |
regional part of telencephalon | 2.67e-09 | 32 |
cerebral hemisphere | 5.19e-09 | 32 |
bone marrow | 8.99e-09 | 76 |
bone element | 2.81e-08 | 82 |
neural plate | 1.75e-07 | 82 |
presumptive neural plate | 1.75e-07 | 82 |
neurectoderm | 2.01e-07 | 86 |