FFCP PHASE1:Hg19::chr13:48877845..48877892,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:48877845..48877892,+ to FFCP PHASE1:Hg19::chr13:48877845..48877892,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5925 | |EntrezGene=5925 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9884 | |HGNC=9884 | ||
|TSSclassifier=strong | |||
|UniProt=F5H6G1,P06400 | |UniProt=F5H6G1,P06400 | ||
|association_with_transcript=0bp_to_ENST00000525036,ENST00000542917,NM_000321,uc001vcb.2,uc010acs.1_5end | |||
|cluster_id=chr13:48877845..48877892,+ | |||
|description=CAGE_peak_2_at_RB1_5end | |||
|id=chr13:48877845..48877892,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.09e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.02e-22!94;UBERON:0001016!1.02e-22!94;UBERON:0007023!4.17e-22!115;UBERON:0001017!2.56e-21!82;UBERON:0005743!7.04e-21!86;UBERON:0001049!3.81e-18!57;UBERON:0005068!3.81e-18!57;UBERON:0006241!3.81e-18!57;UBERON:0007135!3.81e-18!57;UBERON:0000955!1.32e-17!69;UBERON:0006238!1.32e-17!69;UBERON:0002616!2.35e-16!59;UBERON:0000924!9.60e-16!173;UBERON:0006601!9.60e-16!173;UBERON:0002346!2.83e-15!90;UBERON:0003080!8.24e-15!42;UBERON:0004121!2.11e-14!169;UBERON:0002780!2.15e-14!41;UBERON:0001890!2.15e-14!41;UBERON:0006240!2.15e-14!41;UBERON:0003075!9.54e-14!86;UBERON:0007284!9.54e-14!86;UBERON:0000153!9.37e-12!129;UBERON:0007811!9.37e-12!129;UBERON:0002020!2.39e-11!34;UBERON:0003528!2.39e-11!34;UBERON:0003056!3.66e-11!61;UBERON:0001893!5.05e-11!34;UBERON:0002791!7.23e-11!33;UBERON:0000033!8.09e-11!123;UBERON:0001869!4.55e-10!32;UBERON:0000956!1.93e-07!25;UBERON:0000203!1.93e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;7.08e-11;41!UBERON:0001890;7.08e-11;41!UBERON:0000073;8.64e-10;53!UBERON:0002616;8.64e-10;53!UBERON:0002791;1.09e-09;32!UBERON:0003528;1.23e-09;34!UBERON:0002020;1.23e-09;34!UBERON:0001869;2.37e-09;32!UBERON:0001893;2.68e-09;34!UBERON:0001017;8.81e-09;75!UBERON:0001016;1.37e-08;83!UBERON:0000955;1.28e-07;68!UBERON:0007023;1.85e-07;114!UBERON:0000956;1.88e-07;25!UBERON:0000203;1.88e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.03e-22,89;UBERON:0007023,1.26e-21,114;UBERON:0001017,6.75e-21,81;UBERON:0001049,1.00e-17,56;UBERON:0005068,1.00e-17,56;UBERON:0006241,1.00e-17,56;UBERON:0007135,1.00e-17,56;UBERON:0000955,3.38e-17,68;UBERON:0006238,3.38e-17,68;UBERON:0000073,5.72e-16,53;UBERON:0002616,5.72e-16,53;UBERON:0002346,1.87e-15,86;UBERON:0004121,8.84e-15,171;UBERON:0000924,8.84e-15,171;UBERON:0006601,8.84e-15,171;UBERON:0002780,2.15e-14,41;UBERON:0001890,2.15e-14,41;UBERON:0003080,2.15e-14,41;UBERON:0006240,2.15e-14,41;UBERON:0003075,6.64e-14,82;UBERON:0007284,6.64e-14,82;UBERON:0010314,1.26e-12,132;UBERON:0003528,2.39e-11,34;UBERON:0002020,2.39e-11,34;UBERON:0003056,2.66e-11,61;UBERON:0001893,5.05e-11,34;UBERON:0010371,1.03e-10,104;UBERON:0002791,2.04e-10,32;UBERON:0001869,4.55e-10,32;UBERON:0011216,1.52e-09,223;UBERON:0000956,1.93e-07,25;UBERON:0000203,1.93e-07,25 | |||
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| ||
|short_description=p2@RB1 | |||
}} | }} |
Latest revision as of 15:14, 17 September 2015
Short description: | p2@RB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000525036, ENST00000542917, NM_000321, uc001vcb.2, uc010acs.1_5end |
EntrezGene: | RB1 |
HGNC: | 9884 |
UniProt: | F5H6G1P06400 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 1.03e-22 | 89 |
adult organism | 1.26e-21 | 114 |
central nervous system | 6.75e-21 | 81 |
neural tube | 1.00e-17 | 56 |
neural rod | 1.00e-17 | 56 |
future spinal cord | 1.00e-17 | 56 |
neural keel | 1.00e-17 | 56 |
brain | 3.38e-17 | 68 |
future brain | 3.38e-17 | 68 |
regional part of nervous system | 5.72e-16 | 53 |
regional part of brain | 5.72e-16 | 53 |
neurectoderm | 1.87e-15 | 86 |
ectoderm-derived structure | 8.84e-15 | 171 |
ectoderm | 8.84e-15 | 171 |
presumptive ectoderm | 8.84e-15 | 171 |
regional part of forebrain | 2.15e-14 | 41 |
forebrain | 2.15e-14 | 41 |
anterior neural tube | 2.15e-14 | 41 |
future forebrain | 2.15e-14 | 41 |
neural plate | 6.64e-14 | 82 |
presumptive neural plate | 6.64e-14 | 82 |
structure with developmental contribution from neural crest | 1.26e-12 | 132 |
brain grey matter | 2.39e-11 | 34 |
gray matter | 2.39e-11 | 34 |
pre-chordal neural plate | 2.66e-11 | 61 |
telencephalon | 5.05e-11 | 34 |
ecto-epithelium | 1.03e-10 | 104 |
regional part of telencephalon | 2.04e-10 | 32 |
cerebral hemisphere | 4.55e-10 | 32 |
organ system subdivision | 1.52e-09 | 223 |
cerebral cortex | 1.93e-07 | 25 |
pallium | 1.93e-07 | 25 |