FFCP PHASE1:Hg19::chr1:156096337..156096353,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4000 | |EntrezGene=4000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |HGNC=6636 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAQ3,Q5TCI9 | |UniProt=D6RAQ3,Q5TCI9 | ||
|association_with_transcript=0bp_to_ENST00000473598,uc001fnk.2_5end | |association_with_transcript=0bp_to_ENST00000473598,uc001fnk.2_5end | ||
|cluster_id=chr1:156096337..156096353,+ | |||
|coexpression_cluster_id=C512 | |coexpression_cluster_id=C512 | ||
|description=CAGE_peak_6_at_LMNA_5end | |description=CAGE_peak_6_at_LMNA_5end | ||
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|ontology_enrichment_celltype=CL:0002057!9.12e-25!42;CL:0000860!2.19e-23!45;CL:0000557!2.70e-17!71;CL:0002009!1.16e-15!65;CL:0000839!1.68e-15!70;CL:0000766!1.92e-15!76;CL:0002194!1.61e-14!63;CL:0000576!1.61e-14!63;CL:0000040!1.61e-14!63;CL:0000559!1.61e-14!63;CL:0000012!5.13e-14!682;CL:0000548!2.05e-13!679;CL:0000004!2.05e-13!679;CL:0000255!2.05e-13!679;CL:0000048!2.44e-12!430;CL:0000723!7.63e-12!436;CL:0000034!3.45e-11!444;CL:0000134!4.44e-11!358;CL:0002371!5.80e-11!591;CL:0002320!8.44e-11!365;CL:0000219!8.87e-11!390;CL:0000144!3.89e-10!625;CL:0000063!4.96e-09!578;CL:0000763!9.28e-09!112;CL:0000049!9.28e-09!112;CL:0000738!2.29e-08!140;CL:0000003!2.10e-07!722;CL:0002031!2.19e-07!124 | |ontology_enrichment_celltype=CL:0002057!9.12e-25!42;CL:0000860!2.19e-23!45;CL:0000557!2.70e-17!71;CL:0002009!1.16e-15!65;CL:0000839!1.68e-15!70;CL:0000766!1.92e-15!76;CL:0002194!1.61e-14!63;CL:0000576!1.61e-14!63;CL:0000040!1.61e-14!63;CL:0000559!1.61e-14!63;CL:0000012!5.13e-14!682;CL:0000548!2.05e-13!679;CL:0000004!2.05e-13!679;CL:0000255!2.05e-13!679;CL:0000048!2.44e-12!430;CL:0000723!7.63e-12!436;CL:0000034!3.45e-11!444;CL:0000134!4.44e-11!358;CL:0002371!5.80e-11!591;CL:0002320!8.44e-11!365;CL:0000219!8.87e-11!390;CL:0000144!3.89e-10!625;CL:0000063!4.96e-09!578;CL:0000763!9.28e-09!112;CL:0000049!9.28e-09!112;CL:0000738!2.29e-08!140;CL:0000003!2.10e-07!722;CL:0002031!2.19e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.75e-29;33!CL:0002057;1.75e-29;33!CL:0000576;2.48e-22;48!CL:0000473;5.61e-21;39!CL:0000234;5.61e-21;39!CL:0000766;8.61e-15;69!CL:0002393;7.30e-09;6!CL:0002397;7.30e-09;6 | |ontology_enrichment_celltype_v019=CL:0000860;1.75e-29;33!CL:0002057;1.75e-29;33!CL:0000576;2.48e-22;48!CL:0000473;5.61e-21;39!CL:0000234;5.61e-21;39!CL:0000766;8.61e-15;69!CL:0002393;7.30e-09;6!CL:0002397;7.30e-09;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.14e-39,42;CL:0002057,1.14e-39,42;CL:0000473,3.26e-34,48;CL:0000234,3.26e-34,48;CL:0000557,1.83e-30,67;CL:0000766,6.13e-29,72;CL:0002009,7.65e-28,61;CL:0000839,1.11e-27,66;CL:0002194,9.34e-26,59;CL:0000576,9.34e-26,59;CL:0000040,9.34e-26,59;CL:0000559,9.34e-26,59;CL:0000763,2.00e-17,108;CL:0000049,2.00e-17,108;CL:0000738,4.22e-17,136;CL:0002031,4.81e-16,120;CL:0000134,1.41e-14,354;CL:0002320,3.31e-14,361;CL:0002087,3.32e-14,115;CL:0000219,8.83e-14,386;CL:0000048,3.30e-12,427;CL:0000037,4.49e-12,168;CL:0000034,1.04e-11,441;CL:0000723,1.43e-11,433;CL:0002032,6.57e-11,161;CL:0000837,6.57e-11,161;CL:0000988,1.52e-10,177;CL:0002393,1.84e-08,9;CL:0002397,1.84e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;5.71e-29;42 | |ontology_enrichment_development_v019=CL:0002057;5.71e-29;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.95e-17!80;UBERON:0001474!1.24e-16!86;UBERON:0004765!1.87e-14!101;UBERON:0001434!1.87e-14!101;UBERON:0002204!4.17e-13!167;UBERON:0002390!3.23e-11!102;UBERON:0003061!3.23e-11!102;UBERON:0002384!7.91e-11!375;UBERON:0003081!7.10e-10!216;UBERON:0002193!3.32e-09!112;UBERON:0002405!1.09e-08!115;UBERON:0000926!6.51e-08!448;UBERON:0004120!6.51e-08!448;UBERON:0006603!6.51e-08!448 | |ontology_enrichment_uberon=UBERON:0002371!4.95e-17!80;UBERON:0001474!1.24e-16!86;UBERON:0004765!1.87e-14!101;UBERON:0001434!1.87e-14!101;UBERON:0002204!4.17e-13!167;UBERON:0002390!3.23e-11!102;UBERON:0003061!3.23e-11!102;UBERON:0002384!7.91e-11!375;UBERON:0003081!7.10e-10!216;UBERON:0002193!3.32e-09!112;UBERON:0002405!1.09e-08!115;UBERON:0000926!6.51e-08!448;UBERON:0004120!6.51e-08!448;UBERON:0006603!6.51e-08!448 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.11e-30,76;UBERON:0001474,3.34e-29,82;UBERON:0004765,3.92e-26,90;UBERON:0001434,1.40e-22,100;UBERON:0002390,1.83e-22,98;UBERON:0003061,1.83e-22,98;UBERON:0002405,2.55e-21,93;UBERON:0003081,7.38e-20,203;UBERON:0002193,1.05e-18,108;UBERON:0002204,1.98e-14,167;UBERON:0000926,3.51e-14,315;UBERON:0004120,3.51e-14,315;UBERON:0006603,3.51e-14,315;UBERON:0002384,6.37e-14,371 | |||
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|short_description=p6@LMNA | |short_description=p6@LMNA | ||
}} | }} |
Latest revision as of 15:03, 17 September 2015
Short description: | p6@LMNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LMNA_5end |
Coexpression cluster: | C512_Mast_immature_Basophils_CD14_CD34_Peripheral_Natural |
Association with transcript: | 0bp_to_ENST00000473598, uc001fnk.2_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | D6RAQ3Q5TCI9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.14e-39 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.14e-39 | 42 |
defensive cell | 3.26e-34 | 48 |
phagocyte | 3.26e-34 | 48 |
granulocyte monocyte progenitor cell | 1.83e-30 | 67 |
myeloid leukocyte | 6.13e-29 | 72 |
macrophage dendritic cell progenitor | 7.65e-28 | 61 |
myeloid lineage restricted progenitor cell | 1.11e-27 | 66 |
monopoietic cell | 9.34e-26 | 59 |
monocyte | 9.34e-26 | 59 |
monoblast | 9.34e-26 | 59 |
promonocyte | 9.34e-26 | 59 |
myeloid cell | 2.00e-17 | 108 |
common myeloid progenitor | 2.00e-17 | 108 |
leukocyte | 4.22e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 4.81e-16 | 120 |
mesenchymal cell | 1.41e-14 | 354 |
connective tissue cell | 3.31e-14 | 361 |
nongranular leukocyte | 3.32e-14 | 115 |
motile cell | 8.83e-14 | 386 |
multi fate stem cell | 3.30e-12 | 427 |
hematopoietic stem cell | 4.49e-12 | 168 |
stem cell | 1.04e-11 | 441 |
somatic stem cell | 1.43e-11 | 433 |
hematopoietic oligopotent progenitor cell | 6.57e-11 | 161 |
hematopoietic multipotent progenitor cell | 6.57e-11 | 161 |
hematopoietic cell | 1.52e-10 | 177 |
intermediate monocyte | 1.84e-08 | 9 |
CD14-positive, CD16-positive monocyte | 1.84e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.11e-30 | 76 |
bone element | 3.34e-29 | 82 |
skeletal element | 3.92e-26 | 90 |
skeletal system | 1.40e-22 | 100 |
hematopoietic system | 1.83e-22 | 98 |
blood island | 1.83e-22 | 98 |
immune system | 2.55e-21 | 93 |
lateral plate mesoderm | 7.38e-20 | 203 |
hemolymphoid system | 1.05e-18 | 108 |
musculoskeletal system | 1.98e-14 | 167 |
mesoderm | 3.51e-14 | 315 |
mesoderm-derived structure | 3.51e-14 | 315 |
presumptive mesoderm | 3.51e-14 | 315 |
connective tissue | 6.37e-14 | 371 |