FFCP PHASE1:Hg19::chr1:156084522..156084529,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:156084522..156084529,+
|short_description=p5@LMNA
|description=CAGE_peak_5_at_LMNA_5end
|association_with_transcript=5bp_to_ENST00000292302_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4000 | |EntrezGene=4000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |HGNC=6636 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TCJ4 | |UniProt=Q5TCJ4 | ||
|association_with_transcript=5bp_to_ENST00000292302_5end | |||
|cluster_id=chr1:156084522..156084529,+ | |||
|coexpression_cluster_id=C1839 | |||
|description=CAGE_peak_5_at_LMNA_5end | |||
|id=chr1:156084522..156084529,+ | |||
|ontology_enrichment_celltype=CL:0000144!2.07e-32!625;CL:0002371!7.28e-32!591;CL:0000012!2.38e-31!682;CL:0000548!8.46e-31!679;CL:0000004!8.46e-31!679;CL:0000255!8.46e-31!679;CL:0000055!1.68e-25!180;CL:0000003!4.01e-18!722;CL:0000222!2.91e-17!119;CL:0000057!4.25e-15!75;CL:0000723!1.60e-13!436;CL:0000063!2.30e-13!578;CL:0000183!2.46e-13!59;CL:0000048!2.59e-13!430;CL:0000034!2.06e-12!444;CL:0000220!7.86e-12!246;CL:0000680!1.22e-11!57;CL:0000056!1.22e-11!57;CL:0000355!1.22e-11!57;CL:0000187!2.08e-11!54;CL:0002321!3.51e-11!248;CL:0000393!6.82e-09!60;CL:0000211!6.82e-09!60;CL:0000192!8.93e-09!42;CL:0000514!8.93e-09!42;CL:0002320!1.57e-07!365;CL:0002620!8.30e-07!23;CL:0000359!9.04e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000187;3.30e-07;55!CL:0000192;4.85e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.56e-18,121;CL:0000057,6.89e-15,76;CL:0000723,1.87e-14,433;CL:0000048,3.06e-14,427;CL:0000034,3.11e-13,441;CL:0000680,3.47e-12,58;CL:0000056,3.47e-12,58;CL:0000355,3.47e-12,58;CL:0000187,5.91e-12,55;CL:0002321,1.12e-11,250;CL:0000192,2.69e-09,43;CL:0000514,2.69e-09,43;CL:0000393,3.17e-09,61;CL:0000211,3.17e-09,61;CL:0002320,5.08e-08,361;CL:0002620,7.79e-07,23;CL:0000359,8.49e-07,32;CL:0000213,8.58e-07,58;CL:0000215,8.58e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000355;3.78e-07;58!CL:0000514;4.85e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!3.46e-15!448;UBERON:0004120!3.46e-15!448;UBERON:0006603!3.46e-15!448;UBERON:0000914!5.61e-15!83;UBERON:0002329!5.61e-15!83;UBERON:0003077!5.61e-15!83;UBERON:0003059!5.61e-15!83;UBERON:0007282!5.61e-15!83;UBERON:0009618!5.61e-15!83;UBERON:0007285!5.61e-15!83;UBERON:0004290!1.17e-13!70;UBERON:0000486!5.03e-13!82;UBERON:0002204!2.23e-12!167;UBERON:0003081!4.99e-11!216;UBERON:0005256!5.25e-11!143;UBERON:0004872!5.54e-11!84;UBERON:0001134!1.76e-10!61;UBERON:0002036!1.76e-10!61;UBERON:0003082!1.76e-10!61;UBERON:0002049!3.12e-10!79;UBERON:0007798!3.12e-10!79;UBERON:0001981!7.41e-10!60;UBERON:0007500!7.41e-10!60;UBERON:0004537!7.41e-10!60;UBERON:0006965!7.41e-10!60;UBERON:0001637!9.44e-10!42;UBERON:0003509!9.44e-10!42;UBERON:0004572!9.44e-10!42;UBERON:0002385!1.09e-09!63;UBERON:0001015!1.09e-09!63;UBERON:0000383!1.09e-09!63;UBERON:0000055!1.48e-09!69;UBERON:0003914!2.91e-09!118;UBERON:0002199!4.60e-08!45;UBERON:0002416!4.60e-08!45;UBERON:0002100!6.99e-08!216;UBERON:0003102!1.50e-07!95;UBERON:0004535!1.94e-07!110;UBERON:0002384!2.60e-07!375;UBERON:0004573!2.79e-07!33;UBERON:0004571!2.79e-07!33;UBERON:0003104!3.14e-07!238;UBERON:0009142!3.14e-07!238;UBERON:0001009!3.53e-07!113;UBERON:0000490!6.28e-07!138;UBERON:0002097!7.72e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.37e-07;42!UBERON:0003509;2.37e-07;42!UBERON:0004572;2.37e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.42e-16,315;UBERON:0004120,2.42e-16,315;UBERON:0006603,2.42e-16,315;UBERON:0007503,2.96e-16,78;UBERON:0002329,3.24e-14,71;UBERON:0003059,3.24e-14,71;UBERON:0007282,3.24e-14,71;UBERON:0004290,3.24e-14,71;UBERON:0009618,3.24e-14,71;UBERON:0002204,3.67e-14,167;UBERON:0007524,5.04e-14,73;UBERON:0003077,1.15e-13,72;UBERON:0007285,1.15e-13,72;UBERON:0000486,1.49e-13,83;UBERON:0004872,2.67e-11,83;UBERON:0001134,5.42e-11,62;UBERON:0002036,5.42e-11,62;UBERON:0003082,5.42e-11,62;UBERON:0002049,1.53e-10,78;UBERON:0007798,1.53e-10,78;UBERON:0003081,2.00e-10,203;UBERON:0007500,3.26e-10,59;UBERON:0001981,3.26e-10,59;UBERON:0004537,3.26e-10,59;UBERON:0006965,3.26e-10,59;UBERON:0002385,3.52e-10,64;UBERON:0001015,3.52e-10,64;UBERON:0000383,3.52e-10,64;UBERON:0000055,7.12e-10,68;UBERON:0001637,8.55e-10,42;UBERON:0003509,8.55e-10,42;UBERON:0004572,8.55e-10,42;UBERON:0000490,2.32e-09,148;UBERON:0003914,5.01e-09,117;UBERON:0005256,6.13e-09,122;UBERON:0003104,8.47e-09,160;UBERON:0009142,8.47e-09,160;UBERON:0002199,1.73e-08,46;UBERON:0002416,1.73e-08,46;UBERON:0002384,8.96e-08,371;UBERON:0004535,1.32e-07,109;UBERON:0001009,2.44e-07,112;UBERON:0004573,2.61e-07,33;UBERON:0004571,2.61e-07,33;UBERON:0003102,2.69e-07,99;UBERON:0002097,3.02e-07,41;UBERON:0002100,4.25e-07,199 | |||
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| ||
|short_description=p5@LMNA | |||
}} | }} |
Latest revision as of 14:57, 17 September 2015
Short description: | p5@LMNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LMNA_5end |
Coexpression cluster: | C1839_Mast_immature_Fibroblast_Mesenchymal_Hair_tenocyte_Keratocytes |
Association with transcript: | 5bp_to_ENST00000292302_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | Q5TCJ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.56e-18 | 121 |
fibroblast | 6.89e-15 | 76 |
somatic stem cell | 1.87e-14 | 433 |
multi fate stem cell | 3.06e-14 | 427 |
stem cell | 3.11e-13 | 441 |
muscle precursor cell | 3.47e-12 | 58 |
myoblast | 3.47e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.47e-12 | 58 |
muscle cell | 5.91e-12 | 55 |
embryonic cell | 1.12e-11 | 250 |
smooth muscle cell | 2.69e-09 | 43 |
smooth muscle myoblast | 2.69e-09 | 43 |
electrically responsive cell | 3.17e-09 | 61 |
electrically active cell | 3.17e-09 | 61 |
connective tissue cell | 5.08e-08 | 361 |
skin fibroblast | 7.79e-07 | 23 |
vascular associated smooth muscle cell | 8.49e-07 | 32 |
lining cell | 8.58e-07 | 58 |
barrier cell | 8.58e-07 | 58 |