FFCP PHASE1:Hg19::chr4:3387801..3387823,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6002 | |EntrezGene=6002 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9994 | |HGNC=9994 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=103bp_to_ENST00000504194_5end | |association_with_transcript=103bp_to_ENST00000504194_5end | ||
|cluster_id=chr4:3387801..3387823,+ | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_16_at_RGS12_5end | |description=CAGE_peak_16_at_RGS12_5end | ||
|id=chr4:3387801..3387823,+ | |id=chr4:3387801..3387823,+ | ||
|ontology_enrichment_celltype=CL:0000148!4.75e-11!10;CL:0000541!4.75e-11!10;CL:0000147!1.18e-07!14 | |ontology_enrichment_celltype=CL:0000148!4.75e-11!10;CL:0000541!4.75e-11!10;CL:0000147!1.18e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000148;2.17e-41;10!CL:0000147;1.22e-29;14!CL:0002567;3.29e-23;3!CL:0000710;8.27e-21;20!CL:0002566;1.03e-17;1!CL:0000075;1.90e-15;27!CL:0002077;1.71e-12;34!CL:0000235;6.70e-12;6!CL:0000840;6.70e-12;5!CL:0001014;1.57e-09;2!CL:0001016;1.57e-09;2!CL:0000150;2.29e-08;9!CL:0000990;3.07e-08;8!CL:0000451;6.74e-07;10!CL:0002623;9.11e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.17e-41,10;CL:0000541,2.17e-41,10;CL:0000147,1.22e-29,14;CL:0002567,3.29e-23,3;CL:0000710,8.27e-21,20;CL:0002566,8.72e-18,1;CL:0000075,1.90e-15,27;CL:0002077,2.76e-12,34;CL:0000235,6.00e-12,6;CL:0000840,6.34e-12,5;CL:0001029,6.34e-12,5;CL:0000333,1.01e-09,41;CL:0001014,1.22e-09,2;CL:0001016,1.22e-09,2;CL:0000150,2.55e-08,9;CL:0000990,2.96e-08,8;CL:0000451,6.54e-07,10;CL:0000133,7.57e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;8.69e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,8.69e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.04e-16!115;UBERON:0001049!1.29e-15!57;UBERON:0005068!1.29e-15!57;UBERON:0006241!1.29e-15!57;UBERON:0007135!1.29e-15!57;UBERON:0001893!5.53e-14!34;UBERON:0002616!3.14e-13!59;UBERON:0002780!7.88e-13!41;UBERON:0001890!7.88e-13!41;UBERON:0006240!7.88e-13!41;UBERON:0002791!1.57e-12!33;UBERON:0003080!1.92e-12!42;UBERON:0002020!4.09e-12!34;UBERON:0003528!4.09e-12!34;UBERON:0000955!1.04e-11!69;UBERON:0006238!1.04e-11!69;UBERON:0001869!6.73e-11!32;UBERON:0001950!6.73e-11!20;UBERON:0001017!2.63e-10!82;UBERON:0002619!8.76e-10!22;UBERON:0005743!1.33e-09!86;UBERON:0000153!2.57e-09!129;UBERON:0007811!2.57e-09!129;UBERON:0002298!9.55e-09!8;UBERON:0003075!1.00e-08!86;UBERON:0007284!1.00e-08!86;UBERON:0000956!1.95e-08!25;UBERON:0000203!1.95e-08!25;UBERON:0000033!2.26e-08!123;UBERON:0000073!3.05e-08!94;UBERON:0001016!3.05e-08!94;UBERON:0002346!3.93e-08!90;UBERON:0003056!1.59e-07!61;UBERON:0000200!2.27e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002171;3.74e-18;1!UBERON:0006518;3.74e-18;1!UBERON:0008949;3.74e-18;1!UBERON:0000101;3.74e-18;1!UBERON:0002167;3.74e-18;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,3.75e-18,1;UBERON:0006518,3.75e-18,1;UBERON:0008949,3.75e-18,1;UBERON:0000101,3.75e-18,1;UBERON:0002167,3.75e-18,1 | |||
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| ||
|short_description=p16@RGS12 | |short_description=p16@RGS12 | ||
}} | }} |
Latest revision as of 14:13, 17 September 2015
Short description: | p16@RGS12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_RGS12_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 103bp_to_ENST00000504194_5end |
EntrezGene: | RGS12 |
HGNC: | 9994 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.17e-41 | 10 |
melanoblast | 2.17e-41 | 10 |
pigment cell | 1.22e-29 | 14 |
light melanocyte | 3.29e-23 | 3 |
neurecto-epithelial cell | 8.27e-21 | 20 |
dark melanocyte | 8.72e-18 | 1 |
columnar/cuboidal epithelial cell | 1.90e-15 | 27 |
ecto-epithelial cell | 2.76e-12 | 34 |
macrophage | 6.00e-12 | 6 |
immature conventional dendritic cell | 6.34e-12 | 5 |
common dendritic progenitor | 6.34e-12 | 5 |
migratory neural crest cell | 1.01e-09 | 41 |
CD1a-positive Langerhans cell | 1.22e-09 | 2 |
immature CD1a-positive Langerhans cell | 1.22e-09 | 2 |
glandular epithelial cell | 2.55e-08 | 9 |
conventional dendritic cell | 2.96e-08 | 8 |
dendritic cell | 6.54e-07 | 10 |
neurectodermal cell | 7.57e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 3.75e-18 | 1 |
right lung lobe | 3.75e-18 | 1 |
lower lobe of lung | 3.75e-18 | 1 |
lobe of lung | 3.75e-18 | 1 |
right lung | 3.75e-18 | 1 |
Ontology term | p-value | n |
---|---|---|
melanoma | 8.69e-10 | 2 |