FFCP PHASE1:Hg19::chr20:62368028..62368039,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54923 | |EntrezGene=54923 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26016 | |HGNC=26016 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=7bp_to_ENST00000480139_5end | |association_with_transcript=7bp_to_ENST00000480139_5end | ||
|cluster_id=chr20:62368028..62368039,+ | |||
|coexpression_cluster_id=C974 | |coexpression_cluster_id=C974 | ||
|description=CAGE_peak_4_at_LIME1_5end | |description=CAGE_peak_4_at_LIME1_5end | ||
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|ontology_enrichment_celltype=CL:0000542!9.12e-40!53;CL:0000051!9.12e-40!53;CL:0000838!9.01e-39!52;CL:0000791!1.51e-23!18;CL:0000789!1.51e-23!18;CL:0002420!1.51e-23!18;CL:0002419!1.51e-23!18;CL:0000790!1.51e-23!18;CL:0000084!3.07e-23!25;CL:0000827!3.07e-23!25;CL:0000738!3.11e-22!140;CL:0002087!3.85e-20!119;CL:0000037!1.29e-17!172;CL:0000566!1.29e-17!172;CL:0002031!2.82e-16!124;CL:0000988!1.78e-15!182;CL:0000625!2.12e-15!11;CL:0000945!1.33e-13!24;CL:0000826!1.33e-13!24;CL:0002032!1.48e-13!165;CL:0000837!1.48e-13!165;CL:0000624!7.01e-09!6 | |ontology_enrichment_celltype=CL:0000542!9.12e-40!53;CL:0000051!9.12e-40!53;CL:0000838!9.01e-39!52;CL:0000791!1.51e-23!18;CL:0000789!1.51e-23!18;CL:0002420!1.51e-23!18;CL:0002419!1.51e-23!18;CL:0000790!1.51e-23!18;CL:0000084!3.07e-23!25;CL:0000827!3.07e-23!25;CL:0000738!3.11e-22!140;CL:0002087!3.85e-20!119;CL:0000037!1.29e-17!172;CL:0000566!1.29e-17!172;CL:0002031!2.82e-16!124;CL:0000988!1.78e-15!182;CL:0000625!2.12e-15!11;CL:0000945!1.33e-13!24;CL:0000826!1.33e-13!24;CL:0002032!1.48e-13!165;CL:0000837!1.48e-13!165;CL:0000624!7.01e-09!6 | ||
|ontology_enrichment_celltype_v019=CL:0000084;9.79e-41;25!CL:0000791;4.39e-40;18!CL:0000789;4.39e-40;18!CL:0002419;4.39e-40;18!CL:0000625;9.01e-26;11!CL:0000542;6.92e-20;53!CL:0000624;2.35e-14;6!CL:0000784;9.88e-09;3!CL:0000898;2.39e-08;3!CL:0000623;8.08e-08;3!CL:0000226;3.07e-07;3!CL:0000842;3.07e-07;3 | |ontology_enrichment_celltype_v019=CL:0000084;9.79e-41;25!CL:0000791;4.39e-40;18!CL:0000789;4.39e-40;18!CL:0002419;4.39e-40;18!CL:0000625;9.01e-26;11!CL:0000542;6.92e-20;53!CL:0000624;2.35e-14;6!CL:0000784;9.88e-09;3!CL:0000898;2.39e-08;3!CL:0000623;8.08e-08;3!CL:0000226;3.07e-07;3!CL:0000842;3.07e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000084,9.25e-41,25;CL:0000827,9.25e-41,25;CL:0000791,3.84e-40,18;CL:0000789,3.84e-40,18;CL:0002420,3.84e-40,18;CL:0002419,3.84e-40,18;CL:0000790,3.84e-40,18;CL:0000542,1.07e-37,53;CL:0000051,1.07e-37,53;CL:0000838,3.49e-36,52;CL:0000625,8.32e-26,11;CL:0000738,5.22e-21,136;CL:0002087,8.89e-19,115;CL:0000037,1.08e-15,168;CL:0000624,2.25e-14,6;CL:0000988,2.73e-14,177;CL:0002031,2.92e-13,120;CL:0002032,3.26e-11,161;CL:0000837,3.26e-11,161;CL:0000784,9.53e-09,3;CL:0000898,2.45e-08,3;CL:0000623,7.90e-08,3;CL:0000825,7.90e-08,3;CL:0000226,2.98e-07,3;CL:0000842,2.98e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;4.39e-40;18!CL:0000051;6.92e-20;53 | |ontology_enrichment_development_v019=CL:0000790;4.39e-40;18!CL:0000051;6.92e-20;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.07e-15!115;UBERON:0000178!5.67e-11!15;UBERON:0000179!5.67e-11!15;UBERON:0000463!5.67e-11!15 | |ontology_enrichment_uberon=UBERON:0007023!7.07e-15!115;UBERON:0000178!5.67e-11!15;UBERON:0000179!5.67e-11!15;UBERON:0000463!5.67e-11!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.63e-19;15!UBERON:0000179;4.63e-19;15!UBERON:0000463;4.63e-19;15!UBERON:0002390;1.22e-12;32!UBERON:0002193;3.20e-09;42 | |ontology_enrichment_uberon_v019=UBERON:0000178;4.63e-19;15!UBERON:0000179;4.63e-19;15!UBERON:0000463;4.63e-19;15!UBERON:0002390;1.22e-12;32!UBERON:0002193;3.20e-09;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.05e-19,15;UBERON:0000179,5.05e-19,15;UBERON:0000463,5.05e-19,15;UBERON:0002370,3.04e-09,4;UBERON:0005058,3.04e-09,4;UBERON:0009113,3.04e-09,4;UBERON:0003295,3.04e-09,4;UBERON:0005562,3.04e-09,4 | |||
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|short_description=p4@LIME1 | |short_description=p4@LIME1 | ||
}} | }} |
Latest revision as of 14:05, 17 September 2015
Short description: | p4@LIME1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LIME1_5end |
Coexpression cluster: | C974_Dendritic_CD8_CD4_Natural_NK_B_Basophils |
Association with transcript: | 7bp_to_ENST00000480139_5end |
EntrezGene: | LIME1 |
HGNC: | 26016 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 9.25e-41 | 25 |
pro-T cell | 9.25e-41 | 25 |
mature alpha-beta T cell | 3.84e-40 | 18 |
alpha-beta T cell | 3.84e-40 | 18 |
immature T cell | 3.84e-40 | 18 |
mature T cell | 3.84e-40 | 18 |
immature alpha-beta T cell | 3.84e-40 | 18 |
lymphocyte | 1.07e-37 | 53 |
common lymphoid progenitor | 1.07e-37 | 53 |
lymphoid lineage restricted progenitor cell | 3.49e-36 | 52 |
CD8-positive, alpha-beta T cell | 8.32e-26 | 11 |
leukocyte | 5.22e-21 | 136 |
nongranular leukocyte | 8.89e-19 | 115 |
hematopoietic stem cell | 1.08e-15 | 168 |
CD4-positive, alpha-beta T cell | 2.25e-14 | 6 |
hematopoietic cell | 2.73e-14 | 177 |
hematopoietic lineage restricted progenitor cell | 2.92e-13 | 120 |
hematopoietic oligopotent progenitor cell | 3.26e-11 | 161 |
hematopoietic multipotent progenitor cell | 3.26e-11 | 161 |
plasmacytoid dendritic cell | 9.53e-09 | 3 |
naive T cell | 2.45e-08 | 3 |
natural killer cell | 7.90e-08 | 3 |
pro-NK cell | 7.90e-08 | 3 |
single nucleate cell | 2.98e-07 | 3 |
mononuclear cell | 2.98e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.05e-19 | 15 |
haemolymphatic fluid | 5.05e-19 | 15 |
organism substance | 5.05e-19 | 15 |
thymus | 3.04e-09 | 4 |
hemolymphoid system gland | 3.04e-09 | 4 |
thymic region | 3.04e-09 | 4 |
pharyngeal gland | 3.04e-09 | 4 |
thymus primordium | 3.04e-09 | 4 |