FFCP PHASE1:Hg19::chr1:155881114..155881123,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:155881114..155881123,- to FFCP PHASE1:Hg19::chr1:155881114..155881123,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6016 | |EntrezGene=6016 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10023 | |HGNC=10023 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=11bp_to_ENST00000461050_5end | |||
|cluster_id=chr1:155881114..155881123,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_4_at_RIT1_5end | |||
|id=chr1:155881114..155881123,- | |||
|ontology_enrichment_celltype=CL:0000766!3.02e-31!76;CL:0000839!4.04e-25!70;CL:0002057!5.85e-25!42;CL:0000557!1.66e-24!71;CL:0002194!8.37e-24!63;CL:0000576!8.37e-24!63;CL:0000040!8.37e-24!63;CL:0000559!8.37e-24!63;CL:0002009!2.27e-23!65;CL:0000860!2.44e-23!45;CL:0000738!1.67e-20!140;CL:0000763!8.25e-19!112;CL:0000049!8.25e-19!112;CL:0002031!1.70e-14!124;CL:0002087!2.56e-14!119;CL:0000037!1.90e-13!172;CL:0000566!1.90e-13!172;CL:0002032!6.01e-13!165;CL:0000837!6.01e-13!165;CL:0000988!9.96e-12!182;CL:0000134!2.72e-08!358;CL:0002320!3.88e-08!365;CL:0000048!8.90e-08!430;CL:0000219!1.00e-07!390;CL:0000034!2.69e-07!444;CL:0000723!2.76e-07!436;CL:0000094!7.49e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.36e-48;33!CL:0002057;1.36e-48;33!CL:0000473;2.93e-40;39!CL:0000234;2.93e-40;39!CL:0000576;3.79e-34;48!CL:0000766;4.42e-27;69!CL:0000094;1.35e-14;8!CL:0000763;1.84e-12;100!CL:0000081;2.50e-12;11!CL:0000738;2.65e-12;136!CL:0002087;2.18e-11;104!CL:0000988;2.26e-07;177!CL:0000775;8.41e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.18e-65,72;CL:0002009,2.04e-53,61;CL:0000860,3.18e-53,42;CL:0002057,3.18e-53,42;CL:0002194,3.47e-53,59;CL:0000576,3.47e-53,59;CL:0000040,3.47e-53,59;CL:0000559,3.47e-53,59;CL:0000473,6.89e-53,48;CL:0000234,6.89e-53,48;CL:0000738,2.83e-52,136;CL:0000557,5.09e-52,67;CL:0000839,1.14e-50,66;CL:0000763,1.59e-47,108;CL:0000049,1.59e-47,108;CL:0000037,1.59e-40,168;CL:0000988,1.46e-38,177;CL:0002032,5.75e-38,161;CL:0000837,5.75e-38,161;CL:0002087,1.97e-37,115;CL:0002031,2.08e-35,120;CL:0000134,2.64e-18,354;CL:0002320,1.89e-17,361;CL:0000219,3.03e-16,386;CL:0000048,5.85e-16,427;CL:0000034,6.65e-16,441;CL:0000723,2.33e-15,433;CL:0000094,1.31e-14,8;CL:0000081,1.66e-12,11;CL:0000775,8.54e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;6.83e-39;42!CL:0000049;8.23e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.32e-19!80;UBERON:0002193!2.80e-18!112;UBERON:0002390!3.38e-18!102;UBERON:0003061!3.38e-18!102;UBERON:0001474!5.50e-18!86;UBERON:0004765!1.60e-16!101;UBERON:0001434!1.60e-16!101;UBERON:0002405!4.79e-13!115;UBERON:0002204!3.14e-10!167;UBERON:0002384!2.63e-08!375;UBERON:0003081!2.50e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.58e-44,76;UBERON:0002390,4.22e-43,98;UBERON:0003061,4.22e-43,98;UBERON:0002193,1.13e-40,108;UBERON:0001474,1.71e-39,82;UBERON:0002405,1.10e-37,93;UBERON:0004765,1.56e-34,90;UBERON:0001434,1.81e-29,100;UBERON:0003081,6.09e-19,203;UBERON:0002204,1.40e-17,167;UBERON:0002384,6.05e-17,371;UBERON:0000926,1.33e-10,315;UBERON:0004120,1.33e-10,315;UBERON:0006603,1.33e-10,315 | |||
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|phase1_expression=0.54503513781167,0.642301571672949,0.704772020479856,0,0,0,2.53299878168311,0,0.522371256399677,0.245733936501509,0,0,0,0.247532705920093,0.331397375727916,0,0,0.730310090387373,0.487932798790507,0.246242116153576,0.408001382488506,0,0,0.273748850145768,0.125542639594803,0.61130724598361,0.164201178899891,0.314843125254717,4.72037132218685,4.98978217526377,3.40595471295367,0,0.30120591877825,0.369754010166788,0,0.142169232487422,0.293600439334847,4.9859586767869,4.21143339687298,2.17010870715852,2.46307021663917,3.2389366601898,3.09090681161024,5.81592955118259,4.91238726795452,4.60909716256851,7.67015821788759,5.34518254428373,8.3620720141678,7.19230980805376,8.45330331546032,8.0403958162119,5.17118521104928,5.16387746867061,5.41705946377367,7.15320890261898,5.73102915121476,10.1125568000288,6.42776173978895,9.62787081228281,6.39337125799041,6.92687730392104,8.37747362010854,5.54092175692502,6.09439401120026,7.94339314567596,6.85104473895132,8.03995728821578,5.21482918420201,9.33912032232002,7.87019353423379,9.20694089968912,9.81033401066742,0.422510572623884,1.06302149982522,1.46761051855863,1.79725809834392,1.65194582125657,3.69668849403284,0.570025487482497,0.59675003159727,0.547992461293902,0,0.546138611262131,0,0.853460445133014,0,0,0,0,0.569212969109448,1.17447437874188,0.764546456250458,3.96513985737078,1.68152568894461,0.263384084775077,1.180258620683,1.17903228824749,0.205601498999509,0.167186495390678,1.30368906653436,0,0,0.334231370655521,0.294605907474837,0.221533894583621,0.812411591295047,0.128091319725675,0.520237390239513,0,0.276350017785848,0.579606171470105,0,0,0,0.339928028092699,1.14966148080576,1.03088233644789,0.506039384039006,0,0,0,0.150575119077773,0.127986611154418,0,0,0,2.21767417547206,1.60464117470104,1.15859523106239,0,0,0.255725123687061,1.44575660953827,0.50133791063589,0.289693037921647,0.795285947051099,1.45990461090791,0.472674085820339,0,0.614843499851882,0.327447688744282,0,0,1.62273696827342,1.74129737299267,0.797747763113191,0.715471872916026,1.14398982156026,0,0.993812036833525,0,0.347140501607594,0.56530794192401,0.419499436209906,0.550236083880135,0.626984899610432,2.06733407335463,2.13459757612026,0.33472061276467,0.402829317109147,0,0.24406205754817,0.735326160691737,0,0.357198913136319,0,0.675668882899933,0,0,0.549605231791222,46.1231461026221,27.1446184903828,0,1.49091585508596,0.12663051166458,0.926864265692532,0.286836620748814,1.06400514659507,0,0,0.98667019366864,1.24484414159907,0.67355336034844,0.163461903113459,0.302714855289863,1.15235184896,0,0.312160076830321,0.570471821544449,0.298897361103602,0,0,0.280901613404497,0.408308342509787,0.122834317311768,0.309977343527296,0,0.247266929278557,0,0,0.168336113954066,0,0.277064115484183,0.877955241761676,0.612975591598039,0.300476117813194,0.794025282120147,0.538168907066586,0,0,0.300091096084402,0.309157587715317,0.515281080091258,0.558350568994769,0.675105328965065,0.292311015483596,0.252433774244115,0.368199594569197,0,0,1.0075209822764,0.339121184620975,0.193260853163297,1.09098448236334,0,0,0.132529768321485,0.464775771478074,0.207322110030741,0,0.36497735907583,0,0.643240938192885,0,0,0,0.236613600079688,1.18009283054671,1.20505514941741,0.220587945464788,0,0.474541238222193,0.134831308160164,0.196221465125346,0,0.738155454624648,0,0,0,0,0,0,0,0.245976877086227,0,0.878002283269004,0,0.301586917234893,0.0925884451585296,0,0,0,0.463721619900307,0.70445216541493,0.433099343283221,0.925971025153221,0.761016608938393,0,0,4.67812311566055,1.40402559083543,2.67536092119711,0,0.839910640994298,0.283550194484773,0.268675568108545,0,0,5.91195885475132,2.46535615237033,0.829312462163088,0.720599767084807,0.88369703398466,0.761974731506028,0.763976851116555,0,0,0,0.300343057843917,0.285826432630578,0,0,0.2933531432838,0.775630294546667,0,0,1.32969058292435,0,0,0,0,0.57191197463259,0.542621605391443,0,0,0.355391948742546,0,1.50719688529793,0.871533458600294,0.399891964728228,0,0,0,1.67737398844108,0,0,0.579125226670317,0.205476322550383,1.07436577943937,0.112085143993527,1.57624608161542,1.50939302401662,1.15508732651774,0.254094624222463,0,0.773288812777695,0.335032530668698,0.637938751653163,11.9841123831549,14.9580729602012,13.2612964299531,0.24538298343828,0.500170521059677,0.542530047399471,0,0.178428988797162,0.315404830067869,0.234282829985426,0.601892199455438,0,0,0.664225598535437,0,0.434418072340414,0.195801157462741,0,1.6541442089831,1.2942852049117,1.70764092485511,0.303127571446259,1.66435439510497,0,0.496215615637554,0.306923946576125,0.561320188866147,0.384417447767103,2.04682899626681,0.321707842287215,0,0.308419387605311,0.355123450626254,0.410635780069046,1.03850885836724,0,0.120859449591622,1.40354529212299,0.368323955743585,1.49258782613989,0.910455840033585,0.524497659837696,0.451199612907412,0.385076685522074,0,0,0.633309773357254,1.13733384070897,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0,0,0.657779629937804,0,0,0.328014645699706,0.976135183992909,0.20608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| ||
|short_description=p4@RIT1 | |||
}} | }} |
Latest revision as of 13:36, 17 September 2015
Short description: | p4@RIT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RIT1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 11bp_to_ENST00000461050_5end |
EntrezGene: | RIT1 |
HGNC: | 10023 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.18e-65 | 72 |
macrophage dendritic cell progenitor | 2.04e-53 | 61 |
classical monocyte | 3.18e-53 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.18e-53 | 42 |
monopoietic cell | 3.47e-53 | 59 |
monocyte | 3.47e-53 | 59 |
monoblast | 3.47e-53 | 59 |
promonocyte | 3.47e-53 | 59 |
defensive cell | 6.89e-53 | 48 |
phagocyte | 6.89e-53 | 48 |
leukocyte | 2.83e-52 | 136 |
granulocyte monocyte progenitor cell | 5.09e-52 | 67 |
myeloid lineage restricted progenitor cell | 1.14e-50 | 66 |
myeloid cell | 1.59e-47 | 108 |
common myeloid progenitor | 1.59e-47 | 108 |
hematopoietic stem cell | 1.59e-40 | 168 |
hematopoietic cell | 1.46e-38 | 177 |
hematopoietic oligopotent progenitor cell | 5.75e-38 | 161 |
hematopoietic multipotent progenitor cell | 5.75e-38 | 161 |
nongranular leukocyte | 1.97e-37 | 115 |
hematopoietic lineage restricted progenitor cell | 2.08e-35 | 120 |
mesenchymal cell | 2.64e-18 | 354 |
connective tissue cell | 1.89e-17 | 361 |
motile cell | 3.03e-16 | 386 |
multi fate stem cell | 5.85e-16 | 427 |
stem cell | 6.65e-16 | 441 |
somatic stem cell | 2.33e-15 | 433 |
granulocyte | 1.31e-14 | 8 |
blood cell | 1.66e-12 | 11 |
neutrophil | 8.54e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.58e-44 | 76 |
hematopoietic system | 4.22e-43 | 98 |
blood island | 4.22e-43 | 98 |
hemolymphoid system | 1.13e-40 | 108 |
bone element | 1.71e-39 | 82 |
immune system | 1.10e-37 | 93 |
skeletal element | 1.56e-34 | 90 |
skeletal system | 1.81e-29 | 100 |
lateral plate mesoderm | 6.09e-19 | 203 |
musculoskeletal system | 1.40e-17 | 167 |
connective tissue | 6.05e-17 | 371 |
mesoderm | 1.33e-10 | 315 |
mesoderm-derived structure | 1.33e-10 | 315 |
presumptive mesoderm | 1.33e-10 | 315 |