FFCP PHASE1:Hg19::chr1:155880936..155880941,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:155880936..155880941,-
|short_description=p7@RIT1
|description=CAGE_peak_7_at_RIT1_5end
|association_with_transcript=-230bp_to_ENST00000368322_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6016 | |EntrezGene=6016 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10023 | |HGNC=10023 | ||
|TSSclassifier=strong | |||
|UniProt=Q92963 | |UniProt=Q92963 | ||
|association_with_transcript=-230bp_to_ENST00000368322_5end | |||
|cluster_id=chr1:155880936..155880941,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_7_at_RIT1_5end | |||
|id=chr1:155880936..155880941,- | |||
|ontology_enrichment_celltype=CL:0002057!1.63e-27!42;CL:0000860!1.17e-24!45;CL:0000766!8.94e-23!76;CL:0002009!1.19e-20!65;CL:0002194!1.76e-20!63;CL:0000576!1.76e-20!63;CL:0000040!1.76e-20!63;CL:0000559!1.76e-20!63;CL:0000557!7.90e-20!71;CL:0000839!4.08e-19!70;CL:0000763!3.00e-13!112;CL:0000049!3.00e-13!112;CL:0000738!1.82e-09!140;CL:0002087!7.85e-08!119;CL:0002031!3.63e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.63e-74;33!CL:0002057;8.63e-74;33!CL:0000473;1.22e-49;39!CL:0000234;1.22e-49;39!CL:0000576;1.48e-31;48!CL:0000766;1.82e-25;69!CL:0000094;6.20e-16;8!CL:0000763;2.70e-13;100!CL:0000771;8.76e-12;2!CL:0000081;1.63e-11;11!CL:0002087;2.76e-09;104!CL:0000738;2.47e-08;136!CL:0000775;9.32e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.49e-63,42;CL:0002057,4.49e-63,42;CL:0000766,2.54e-55,72;CL:0000473,1.67e-54,48;CL:0000234,1.67e-54,48;CL:0002194,1.66e-42,59;CL:0000576,1.66e-42,59;CL:0000040,1.66e-42,59;CL:0000559,1.66e-42,59;CL:0002009,5.88e-41,61;CL:0000839,7.24e-41,66;CL:0000557,3.50e-40,67;CL:0000763,6.69e-35,108;CL:0000049,6.69e-35,108;CL:0000738,1.97e-28,136;CL:0000037,8.81e-22,168;CL:0002032,2.43e-21,161;CL:0000837,2.43e-21,161;CL:0002087,3.69e-21,115;CL:0000988,2.43e-20,177;CL:0002031,4.29e-20,120;CL:0000094,7.04e-16,8;CL:0000771,8.78e-12,2;CL:0000081,1.78e-11,11;CL:0000134,2.14e-08,354;CL:0002320,4.23e-08,361;CL:0000775,7.90e-08,3;CL:0000219,8.92e-08,386;CL:0000048,4.12e-07,427;CL:0000723,6.53e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;4.77e-48;42!CL:0000049;2.41e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.39e-16!80;UBERON:0001474!5.75e-16!86;UBERON:0002390!3.24e-14!102;UBERON:0003061!3.24e-14!102;UBERON:0004765!3.80e-13!101;UBERON:0001434!3.80e-13!101;UBERON:0002193!6.73e-13!112;UBERON:0002405!7.94e-11!115;UBERON:0002204!6.24e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.05e-35,76;UBERON:0001474,6.83e-32,82;UBERON:0004765,1.37e-28,90;UBERON:0002390,4.29e-28,98;UBERON:0003061,4.29e-28,98;UBERON:0002405,1.71e-27,93;UBERON:0001434,3.40e-25,100;UBERON:0002193,5.59e-25,108;UBERON:0002204,3.33e-14,167;UBERON:0003081,9.70e-12,203;UBERON:0002384,1.07e-07,371 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.369363174230364,0,0.313454721478088,0.286235987131057,0.136874425072884,0,0.0764134057479513,0,0.0787107813136792,0,0,1.08371286321253,0,0,0,0,0,0,0.553995408531877,0.802177789880567,0.217010870715852,0.447830948479849,0,0,0.581592955118259,2.26725566213286,0.485168122375632,1.39457422143411,3.70051099219643,2.78735733805593,3.16461631554365,3.07392847834921,1.18241114944293,1.37898272294647,1.93645405075148,1.35426486594342,1.69418105588344,5.18521685109907,1.57306439111559,1.53041946185451,1.92557416245656,1.91801137739712,2.63881040149373,3.39088217956774,0.852449501065388,0.290209238628584,5.6738522469114,1.86846674698672,2.26123798731069,3.65038042894141,0.868755378820466,1.21079900526674,2.20966581592539,0.632924774881769,0,0.212604299965044,0,0.112328631146495,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0.361439152384566,0,0,1.5905718941022,0,0.0945348171640679,0,0.527008714158756,0.0654895377488563,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.516833518338658,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,14.495845917967,7.75560528296651,0,0,0,0.397227542439656,0.573673241497627,0,0,0,0,0,0.134710672069688,0.490385709340376,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0,0.169560592310488,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0.492434012174795,0.468008530278475,0.148631162288728,0,0,0,0,0.290633938513962,0,1.47798971368783,0.264145302039678,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0.07333828582095,0,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0.197030760201927,0,0,0,0,0.773288812777695,0,1.91381625495949,2.99602809578873,0,2.48649308061621,0.12269149171914,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0.206768026122887,1.07857100409308,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,0.0821271560138091,0,0.116210378459959,0.120859449591622,0,0,0,0.182091168006717,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0,0,0,0,0,0,1.58510321173008,0.421258456238981,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0.648473311192717,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0.511343412510774,0.123084805461069,0,0,1.07412704805365,0,0,0,0,0.969332746095218,0,0,0,0.0874599999961957,0,0.341380344856499,0,0,0,0,0.694499979733169,0,0.361789315876224,0,0,0,0,0,0,0.153900517007594,0,0,0,0.217294743844016,0,0.0915975934018623,0,0,0,0,0,0.392125068635479,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0.067401132980677,0,0.937057782901357,0,0.391329237864179,0,0,0,0.91821828489147,0.063186579628488,0,0,0,0.330991955875499,0,1.19472429772959,0.284609546029793,0.416024019039416,0,0,0,0.17472666824203,1.20390222730132,0,0,0,0.0969890164884194,0.176512253383001,0,0,0,0.0633107959558787,0.195551382734803,0.0801588202515337,0,0,0.144090417154106,0.114536596165916,0.171594997861965,0,0.49701014226173,0,1.49494626680975,0.732219924186332,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0.295282444544246,0,0,0.272406812223151,0,0.137539436597234,0.415440338029185,0.674921674654501,0,0,0,0.236417121897595,0,0.105600336519406,0.35857467866569,0,0,0,0,0,0,0.326587360109409,0,0,0.170388021785422,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0.628216385000937,0,0,0.250381861413,0,0,0.0620964029413835,0,0,0,0.285465333544967,0,0,0,0,0,0,0.189403005275089,0,0,0.457680136793847,0,0.15543720058278,0,0.159296767163702,0,0,0,0,0,0,0.380805212168795,0,0.181848659202559,0,0.464033759878494,0.398095888698616,0,0,0,0,0,0.857766365499703,0,0.226705925512272,0,0,0,0,0,0,0,0,2.04993214870357,2.07258205038719,0,0,0,0.265729680626726,0,0.327609848846413,0,0,0,0,0,0.567515953566836,0,0,0,0,0.970423302570136,0.157265941855896,0,0,0,0,0,0.318004350653419,0,0.80057074828547,0.352675943690684,0.3062454773532,0,0,0,0,0.252071696221718,0,0.161475645631851,0,0.392590874004102,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,1.09394961803644,0,0,0,0.383287282918786,0,0,0,0,0,0,0.342976018874837,0,0.0657727735628491,0.472775363535873,0,0,0.471346769748006,0,0,0.215927591218621,0,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| ||
|short_description=p7@RIT1 | |||
}} | }} |
Latest revision as of 13:35, 17 September 2015
Short description: | p7@RIT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RIT1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -230bp_to_ENST00000368322_5end |
EntrezGene: | RIT1 |
HGNC: | 10023 |
UniProt: | Q92963 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.49e-63 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.49e-63 | 42 |
myeloid leukocyte | 2.54e-55 | 72 |
defensive cell | 1.67e-54 | 48 |
phagocyte | 1.67e-54 | 48 |
monopoietic cell | 1.66e-42 | 59 |
monocyte | 1.66e-42 | 59 |
monoblast | 1.66e-42 | 59 |
promonocyte | 1.66e-42 | 59 |
macrophage dendritic cell progenitor | 5.88e-41 | 61 |
myeloid lineage restricted progenitor cell | 7.24e-41 | 66 |
granulocyte monocyte progenitor cell | 3.50e-40 | 67 |
myeloid cell | 6.69e-35 | 108 |
common myeloid progenitor | 6.69e-35 | 108 |
leukocyte | 1.97e-28 | 136 |
hematopoietic stem cell | 8.81e-22 | 168 |
hematopoietic oligopotent progenitor cell | 2.43e-21 | 161 |
hematopoietic multipotent progenitor cell | 2.43e-21 | 161 |
nongranular leukocyte | 3.69e-21 | 115 |
hematopoietic cell | 2.43e-20 | 177 |
hematopoietic lineage restricted progenitor cell | 4.29e-20 | 120 |
granulocyte | 7.04e-16 | 8 |
eosinophil | 8.78e-12 | 2 |
blood cell | 1.78e-11 | 11 |
mesenchymal cell | 2.14e-08 | 354 |
connective tissue cell | 4.23e-08 | 361 |
neutrophil | 7.90e-08 | 3 |
motile cell | 8.92e-08 | 386 |
multi fate stem cell | 4.12e-07 | 427 |
somatic stem cell | 6.53e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.05e-35 | 76 |
bone element | 6.83e-32 | 82 |
skeletal element | 1.37e-28 | 90 |
hematopoietic system | 4.29e-28 | 98 |
blood island | 4.29e-28 | 98 |
immune system | 1.71e-27 | 93 |
skeletal system | 3.40e-25 | 100 |
hemolymphoid system | 5.59e-25 | 108 |
musculoskeletal system | 3.33e-14 | 167 |
lateral plate mesoderm | 9.70e-12 | 203 |
connective tissue | 1.07e-07 | 371 |