FFCP PHASE1:Hg19::chr12:14720884..14720897,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:14720884..14720897,- to FFCP PHASE1:Hg19::chr12:14720884..14720897,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79887 | |EntrezGene=79887 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26215 | |HGNC=26215 | ||
|TSSclassifier=strong | |||
|UniProt=Q6P4A8 | |UniProt=Q6P4A8 | ||
|association_with_transcript=-93bp_to_NM_024829,uc001rcc.1_5end | |||
|cluster_id=chr12:14720884..14720897,- | |||
|description=CAGE_peak_3_at_PLBD1_5end | |||
|id=chr12:14720884..14720897,- | |||
|ontology_enrichment_celltype=CL:0000766!3.41e-30!76;CL:0002057!4.36e-30!42;CL:0002009!5.79e-29!65;CL:0002194!9.03e-28!63;CL:0000576!9.03e-28!63;CL:0000040!9.03e-28!63;CL:0000559!9.03e-28!63;CL:0000860!1.22e-26!45;CL:0000557!2.55e-24!71;CL:0000839!1.66e-22!70;CL:0000763!1.21e-17!112;CL:0000049!1.21e-17!112;CL:0000738!2.70e-13!140;CL:0002087!6.63e-10!119;CL:0000094!2.30e-08!8;CL:0002031!1.36e-07!124;CL:0000037!2.69e-07!172;CL:0000566!2.69e-07!172;CL:0002032!4.09e-07!165;CL:0000837!4.09e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.22e-41;33!CL:0002057;5.22e-41;33!CL:0000473;2.28e-39;39!CL:0000234;2.28e-39;39!CL:0000576;1.75e-32;48!CL:0000766;1.27e-24;69!CL:0000094;1.12e-14;8!CL:0000763;5.42e-11;100!CL:0000039;2.09e-10;7!CL:0000586;2.09e-10;7!CL:0000081;4.21e-10;11!CL:0002393;1.10e-09;6!CL:0002397;1.10e-09;6!CL:0000738;1.14e-08;136!CL:0002087;2.89e-08;104!CL:0000990;2.92e-07;8!CL:0000235;8.06e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.09e-62,72;CL:0002009,3.73e-57,61;CL:0002194,8.33e-55,59;CL:0000576,8.33e-55,59;CL:0000040,8.33e-55,59;CL:0000559,8.33e-55,59;CL:0000473,1.95e-54,48;CL:0000234,1.95e-54,48;CL:0000557,1.50e-50,67;CL:0000860,4.84e-49,42;CL:0002057,4.84e-49,42;CL:0000839,2.69e-47,66;CL:0000763,3.59e-41,108;CL:0000049,3.59e-41,108;CL:0000738,2.90e-36,136;CL:0002087,2.14e-27,115;CL:0000037,1.91e-25,168;CL:0002031,2.96e-24,120;CL:0002032,3.49e-24,161;CL:0000837,3.49e-24,161;CL:0000988,3.90e-23,177;CL:0000094,1.05e-14,8;CL:0000039,2.93e-10,7;CL:0000586,2.93e-10,7;CL:0000081,4.02e-10,11;CL:0000990,1.72e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;9.87e-36;42!CL:0000049;5.37e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.85e-25!102;UBERON:0003061!6.85e-25!102;UBERON:0002193!1.72e-21!112;UBERON:0002371!1.69e-19!80;UBERON:0001474!2.99e-17!86;UBERON:0002405!1.22e-15!115;UBERON:0004765!7.17e-14!101;UBERON:0001434!7.17e-14!101;UBERON:0007023!1.02e-12!115;UBERON:0000062!6.84e-09!511;UBERON:0000926!8.28e-09!448;UBERON:0004120!8.28e-09!448;UBERON:0006603!8.28e-09!448;UBERON:0000922!3.75e-08!612;UBERON:0002050!2.96e-07!605;UBERON:0005423!2.96e-07!605;UBERON:0003081!3.68e-07!216;UBERON:0000468!3.69e-07!659;UBERON:0000923!4.30e-07!604;UBERON:0005291!4.30e-07!604;UBERON:0006598!4.30e-07!604;UBERON:0002532!4.30e-07!604;UBERON:0000467!5.02e-07!625;UBERON:0000480!6.50e-07!626;UBERON:0000178!8.77e-07!15;UBERON:0000179!8.77e-07!15;UBERON:0000463!8.77e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.98e-13;15!UBERON:0000179;3.98e-13;15!UBERON:0000463;3.98e-13;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.26e-53,98;UBERON:0003061,1.26e-53,98;UBERON:0002193,9.56e-47,108;UBERON:0002371,1.33e-42,76;UBERON:0001474,2.80e-38,82;UBERON:0002405,8.34e-35,93;UBERON:0004765,2.02e-33,90;UBERON:0001434,1.83e-28,100;UBERON:0003081,1.31e-19,203;UBERON:0000178,3.22e-13,15;UBERON:0000179,3.22e-13,15;UBERON:0000463,3.22e-13,15;UBERON:0002204,1.01e-11,167;UBERON:0000926,1.68e-10,315;UBERON:0004120,1.68e-10,315;UBERON:0006603,1.68e-10,315 | |||
|phase1_expression=0.181678379270557,0,0,0,0.446961094427288,0,0,0,0.261185628199839,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0,0.492484232307152,0.204000691244253,0.313454721478088,0,0.136874425072884,0,0,0,0,6.68719270643137,7.67658796194425,6.19264493264304,0,0,0,0,0,0,11.0799081706375,4.41197784434312,4.34021741431704,3.80656306207871,1.94336199611388,4.63636021741536,4.07115068582781,4.1566353805769,1.94067248950253,5.81072592264212,2.87817521615278,2.16794459626573,7.19230980805376,7.42866048934392,4.7296445977717,8.96338769915208,3.87290810150296,2.70852973188684,1.69418105588344,2.45615535052061,2.69668181334102,4.59125838556354,1.28371610830437,0.639337125799041,10.5552416059749,7.38015533200038,5.54092175692502,4.64334781805734,3.97169657283798,2.4912889959823,8.03995728821578,4.17186334736161,4.77815458351257,6.65939452896706,6.62899744777616,3.48108626184973,1.26753171787165,2.76385589954557,3.14487968262564,7.07670376222919,8.71025978480737,9.64353520182481,0.570025487482497,0.19891667719909,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,1.24930726552346,1.18388626022008,0,0,0,0,0,0.670700859703636,0.383587685530591,0,0,0.289693037921647,0,0,0.661743720148475,0.443458794925128,0.175669571386252,0.72038491523742,0,0.370784442784429,3.8945687238562,3.48259474598534,2.52620124985844,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1780417436063,23.2668158488995,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0.494533858557114,0,0,0.168336113954066,0,0,0,0.30648779579902,0.600952235626387,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.397589304964456,0.348581828608555,0.207322110030741,0.756962552626885,0.72995471815166,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0.134831308160164,0,0.38474715694639,0,0,0.8231480226628,0,0,0.982827216677626,1.18157981336281,0,0.614942192715568,0.343135620597051,0,0,0.100528972411631,0.0925884451585296,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,4.92434012174795,6.55211942389866,6.39113997841531,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32969058292435,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,2.00902836572851,0,0,0,0,0,0,0,0,0.591092280605782,0,0.385029108839245,0,0,0,0,0,8.98808428736619,8.97484377612075,24.0360997792901,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27444828735176,3.01999881146064,1.81436848265855,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0.308419387605311,0,0,0,0.116210378459959,0.846016147141356,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0.422206515571503,0,0,0.431831832204279,0,0.270946437543853,0,0,0,0.447749509444357,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.721287081534056,0,0,0,0,0,0.193341436584244,0.308097234229289,0.15350367472613,0,0.322260734604821,0.145016693914229,0.426133137080504,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0,0,0.349934720244983,0,0,0,0.753150406214233,0,0,0,0.229723400206959,7.10426652925037,2.29391162142713,1.70894156152249,3.09701308095126,2.46817363851717,7.13320642311989,6.48037724685738,4.75875105776562,0,0,1.47024129588619,0.929015875628594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30998378285754,1.02555725490326,0.970884173996107,0,0,0.47748896947538,0.593929361665277,0,0,0.281338832821026,0,0,0,0.796991953004279,0.276283915531148,0,0,0,0,0,0,0,0.591860433821602,2.3948309234694,0,0,0,0,0.520855522170466,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0.230850775511391,0,1.1528195219403,2.06442582142476,1.3037684630641,0.638002319463839,0.915975934018623,0,0,0,0,0.225595660617181,0.588187602953219,0.503464760927528,0,0,0.210998064528027,0,1.55488378577335,0,2.98578579323551,0.530745387020035,1.22206028986725,0,0,0,0.067401132980677,0.802577647298789,0,0,0.19566461893209,2.42780379534093,1.18375320854817,2.41981432097328,0,2.33790344625405,0,0,0,0,0.313932918407225,1.19472429772959,0.284609546029793,0,0.173559738335131,0.293977192243133,0,0.17472666824203,0,0,0,0,0.775912131907355,0,0.451961481561065,0,0,0,0.782205530939212,1.68333522528221,2.34798294213288,1.79828648623917,2.88180834308212,0,1.37275998289572,0,0.372757606696298,0.942776138467182,0,0,0,0,0.600420288709789,0,0,0,0,0.837847203816763,0.687481272035051,0.717873024576814,1.59743200399193,0.858452096273142,0.89268582976749,1.5452198671947,0,1.16495949527454,0,0,0,2.75596948241297,0,0,0,0.321506296930038,0.137539436597234,0.415440338029185,2.0247650239635,1.5476039091159,0.0607495566580247,0,1.41850273138557,1.10154635083496,0.105600336519406,0,0,5.00286728461357,1.98627591109629,0.76280561296425,0,0,0,0,0,0,0.226624183040251,1.0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| ||
|short_description=p3@PLBD1 | |||
}} | }} |
Latest revision as of 13:24, 17 September 2015
Short description: | p3@PLBD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PLBD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -93bp_to_NM_024829, uc001rcc.1_5end |
EntrezGene: | PLBD1 |
HGNC: | 26215 |
UniProt: | Q6P4A8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.09e-62 | 72 |
macrophage dendritic cell progenitor | 3.73e-57 | 61 |
monopoietic cell | 8.33e-55 | 59 |
monocyte | 8.33e-55 | 59 |
monoblast | 8.33e-55 | 59 |
promonocyte | 8.33e-55 | 59 |
defensive cell | 1.95e-54 | 48 |
phagocyte | 1.95e-54 | 48 |
granulocyte monocyte progenitor cell | 1.50e-50 | 67 |
classical monocyte | 4.84e-49 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.84e-49 | 42 |
myeloid lineage restricted progenitor cell | 2.69e-47 | 66 |
myeloid cell | 3.59e-41 | 108 |
common myeloid progenitor | 3.59e-41 | 108 |
leukocyte | 2.90e-36 | 136 |
nongranular leukocyte | 2.14e-27 | 115 |
hematopoietic stem cell | 1.91e-25 | 168 |
hematopoietic lineage restricted progenitor cell | 2.96e-24 | 120 |
hematopoietic oligopotent progenitor cell | 3.49e-24 | 161 |
hematopoietic multipotent progenitor cell | 3.49e-24 | 161 |
hematopoietic cell | 3.90e-23 | 177 |
granulocyte | 1.05e-14 | 8 |
germ line cell | 2.93e-10 | 7 |
germ cell | 2.93e-10 | 7 |
blood cell | 4.02e-10 | 11 |
conventional dendritic cell | 1.72e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.26e-53 | 98 |
blood island | 1.26e-53 | 98 |
hemolymphoid system | 9.56e-47 | 108 |
bone marrow | 1.33e-42 | 76 |
bone element | 2.80e-38 | 82 |
immune system | 8.34e-35 | 93 |
skeletal element | 2.02e-33 | 90 |
skeletal system | 1.83e-28 | 100 |
lateral plate mesoderm | 1.31e-19 | 203 |
blood | 3.22e-13 | 15 |
haemolymphatic fluid | 3.22e-13 | 15 |
organism substance | 3.22e-13 | 15 |
musculoskeletal system | 1.01e-11 | 167 |
mesoderm | 1.68e-10 | 315 |
mesoderm-derived structure | 1.68e-10 | 315 |
presumptive mesoderm | 1.68e-10 | 315 |