FFCP PHASE1:Hg19::chr11:27723079..27723100,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:27723079..27723100,- to FFCP PHASE1:Hg19::chr11:27723079..27723100,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=627 | |EntrezGene=627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1033 | |HGNC=1033 | ||
|TSSclassifier=strong | |||
|UniProt=P23560 | |UniProt=P23560 | ||
|association_with_transcript=79bp_to_ENST00000395980,NM_170733,uc001mrv.2_5end | |||
|cluster_id=chr11:27723079..27723100,- | |||
|coexpression_cluster_id=C1629 | |||
|description=CAGE_peak_4_at_BDNF_5end | |||
|id=chr11:27723079..27723100,- | |||
|ontology_enrichment_celltype=CL:0000055!7.97e-32!180;CL:0000192!3.06e-18!42;CL:0000514!3.06e-18!42;CL:0000359!6.81e-18!32;CL:0000187!2.99e-16!54;CL:0000057!9.15e-16!75;CL:0000680!1.52e-15!57;CL:0000056!1.52e-15!57;CL:0000355!1.52e-15!57;CL:0000183!3.07e-14!59;CL:0000393!1.20e-13!60;CL:0000211!1.20e-13!60;CL:0000222!4.83e-11!119;CL:0002620!7.06e-09!23;CL:0002539!3.77e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.25e-17;32!CL:0000192;2.88e-14;43!CL:0002620;9.62e-13;23!CL:0002595;2.40e-09;5!CL:0000057;8.21e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.50e-19,32;CL:0000192,4.08e-19,43;CL:0000514,4.08e-19,43;CL:0000057,9.25e-14,76;CL:0000187,3.36e-13,55;CL:0000680,4.03e-13,58;CL:0000056,4.03e-13,58;CL:0000355,4.03e-13,58;CL:0002620,1.49e-12,23;CL:0000393,3.71e-11,61;CL:0000211,3.71e-11,61;CL:0002595,2.37e-09,5;CL:0000222,5.92e-09,121;CL:0000048,8.16e-08,427;CL:0000723,2.04e-07,433;CL:0000034,6.56e-07,441 | |||
|ontology_enrichment_development_v019=CL:0000514;2.88e-14;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;8.28e-08;5!DOID:450;8.28e-08;5!DOID:66;8.28e-08;5!DOID:423;8.28e-08;5!DOID:0080000;8.28e-08;5!DOID:11722;8.28e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.26e-07,5;DOID:450,1.26e-07,5;DOID:66,1.26e-07,5;DOID:423,1.26e-07,5;DOID:0080000,1.26e-07,5;DOID:11722,1.26e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.77e-14!83;UBERON:0002329!1.77e-14!83;UBERON:0003077!1.77e-14!83;UBERON:0003059!1.77e-14!83;UBERON:0007282!1.77e-14!83;UBERON:0009618!1.77e-14!83;UBERON:0007285!1.77e-14!83;UBERON:0004290!5.48e-14!70;UBERON:0001134!1.83e-13!61;UBERON:0002036!1.83e-13!61;UBERON:0003082!1.83e-13!61;UBERON:0002385!4.38e-13!63;UBERON:0001015!4.38e-13!63;UBERON:0000383!4.38e-13!63;UBERON:0000486!3.43e-12!82;UBERON:0001637!1.31e-11!42;UBERON:0003509!1.31e-11!42;UBERON:0004572!1.31e-11!42;UBERON:0004573!1.67e-10!33;UBERON:0004571!1.67e-10!33;UBERON:0000475!2.26e-10!365;UBERON:0005256!3.00e-09!143;UBERON:0002049!1.34e-08!79;UBERON:0007798!1.34e-08!79;UBERON:0001135!2.22e-08!15;UBERON:0001981!1.97e-07!60;UBERON:0007500!1.97e-07!60;UBERON:0004537!1.97e-07!60;UBERON:0006965!1.97e-07!60;UBERON:0004535!2.44e-07!110;UBERON:0004237!3.77e-07!10;UBERON:0004695!3.77e-07!10;UBERON:0002111!3.77e-07!10;UBERON:0004178!3.77e-07!10;UBERON:0000481!4.15e-07!347;UBERON:0002097!5.99e-07!40;UBERON:0004872!7.77e-07!84;UBERON:0000483!8.13e-07!309;UBERON:0001009!9.74e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.93e-12;33!UBERON:0004571;5.93e-12;33!UBERON:0003834;2.40e-09;5!UBERON:0001533;2.40e-09;5!UBERON:0001637;3.57e-09;42!UBERON:0003509;3.57e-09;42!UBERON:0004572;3.57e-09;42!UBERON:0001135;2.32e-07;15!UBERON:0002097;2.86e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.96e-14,42;UBERON:0003509,2.96e-14,42;UBERON:0004572,2.96e-14,42;UBERON:0004573,5.87e-13,33;UBERON:0004571,5.87e-13,33;UBERON:0007524,1.61e-12,73;UBERON:0002329,4.66e-12,71;UBERON:0003059,4.66e-12,71;UBERON:0007282,4.66e-12,71;UBERON:0004290,4.66e-12,71;UBERON:0009618,4.66e-12,71;UBERON:0003077,8.99e-12,72;UBERON:0007285,8.99e-12,72;UBERON:0001134,9.07e-12,62;UBERON:0002036,9.07e-12,62;UBERON:0003082,9.07e-12,62;UBERON:0002385,3.68e-11,64;UBERON:0001015,3.68e-11,64;UBERON:0000383,3.68e-11,64;UBERON:0000486,6.06e-11,83;UBERON:0007503,3.16e-10,78;UBERON:0003834,2.37e-09,5;UBERON:0001533,2.37e-09,5;UBERON:0002049,2.42e-09,78;UBERON:0007798,2.42e-09,78;UBERON:0007500,2.51e-09,59;UBERON:0001981,2.51e-09,59;UBERON:0004537,2.51e-09,59;UBERON:0006965,2.51e-09,59;UBERON:0002097,3.22e-09,41;UBERON:0000490,9.95e-09,148;UBERON:0005256,2.32e-08,122;UBERON:0002199,1.12e-07,46;UBERON:0002416,1.12e-07,46;UBERON:0004872,1.91e-07,83;UBERON:0001135,2.10e-07,15;UBERON:0000055,2.91e-07,68;UBERON:0004535,7.39e-07,109 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0.662794751455832,0.672325146451775,1.80808358407193,1.46062018077475,0.487932798790507,0,0,0,0,0,0.125542639594803,0.0764134057479513,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,0.722878304769133,1.50401373190767,1.88300474649071,0,0.973269740605272,0.756278537312543,3.32594096193846,2.81071314218003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0.993943903390637,1.13967460498122,5.42877641334197,3.72887606973458,0.354668382198357,1.12135520028461,5.33744978648525,1.48000529050296,0.311211035399766,0.269421344139376,0.163461903113459,0.151357427644931,0,0.234321431833797,0,0,0.149448680551801,0.117434498643765,0,0.140450806702248,0.408308342509787,0.245668634623536,0.103325781175765,4.75201142912821,4.45080472701402,0,0,0.336672227908132,0,0,0.877955241761676,3.0648779579902,9.16452159330241,1.36118619792025,5.74046834204358,1.49490172172997,1.05965950579781,5.40163972951924,1.23663035086127,3.09168648054755,2.60563598864226,3.54430297706659,4.57953924257634,4.03894038790583,1.10459878370759,2.7479829659198,14.9104028856978,6.7503905812519,5.76506013855658,0,0,0.286804595389004,0,0,0,0,0,0,1.56449532329816,1.92972281457866,1.38134921352481,0,0,0.118306800039844,0,0.482022059766964,0.220587945464788,0.435758888184812,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54411029268673,0,0,0,0,0.325808305310325,0,4.3299402607582,0,4.69634776943287,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0,0.503946384596579,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0.822619941626588,0,0,0,0,0,4.65378176728,0,0,0.797814349754612,0,0.514414748524284,0,0,3.14551586047925,1.62786481617433,0,0,3.909311436168,0,0.602878754119172,4.35766729300147,4.29883862082845,0,0,0,0.958499421966331,0,0,1.01346914667305,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0.24538298343828,0,0.271265023699736,0.623912584592421,0,0.315404830067869,0.234282829985426,0.902838299183157,0,1.03473071292505,1.99267679560631,1.29058417979192,1.30325421702124,0,0,0,0,0,0,0,0,0.744323423456331,2.60885354589706,1.40330047216537,0.640695746278505,4.09365799253363,2.0911009748669,0,0.154209693802656,0,0.574890092096664,0,0.581051892299796,0.120859449591622,0,0,7.69256802702865,1.45672934405374,1.57349297951309,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0.254876273045038,0,0.447749509444357,0,0,0,0.328014645699706,0.325378394664303,0,1.92295876118521,2.47528499761764,0,0,0,0.580024309752732,0,0.15350367472613,0,0.214840489736547,0.290033387828457,0.0852266274161009,0.178064071293475,0,0,0.127612712494584,0,2.32422774648643,29.2775482552495,4.1822236209636,0.924100740528266,0.532306030317022,2.60979897622522,2.40921484835096,2.57624796135584,0.372158369359667,2.84741482246853,2.85945290885737,0,0.42793898803392,1.27281299170375,2.35484592059769,2.69808686374972,5.4907405947211,4.00562167975334,1.81964233415984,0,0.842516912477962,0,4.14312932373184,8.45201174054043,0.818999468447914,4.24216295861138,0,3.85955740482287,8.62470667813585,4.38450885253763,0,0.655894752046633,4.26111791621678,1.8589409885985,0.281695602532241,0.430234056612155,4.71595396862982,4.9933947207375,0,5.06658324714394,0,0,0.699869440489966,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.747768497892312,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,1.2847046008296,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0.121360521749513,0,0,0,0,0,0.994147647766298,0.422008249231538,0.333926115068718,0.16480387422676,0,0,0,0,0.409074730008619,0,4.3545542272653,0.0898683511473268,0,0,0,0,1.11136990144637,0,0.278304294485554,0,0,0,0,0.1137934482855,0,0,0,0.291604613383254,0,0,0,0,0.110579259931225,0,1.75508317723178,0,0.139423744278603,0,1.93701494939902,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,1.30586246527318,0.424059214301822,0,0,0,0,0.296521128680622,0,0.208843899010911,0.134802265961354,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0.664653872707185,0.661983911750998,0,0,0,0.554698692052555,0,0,0.69647365264322,0,2.0638323896594,0,0,0,0,0,0,0.411125773940253,0.397429223405979,1.01297273529406,0,1.20238230377301,0,0,0,0.114536596165916,0.171594997861965,0.14405479798815,1.98804056904692,0,0.407712618220842,0.523014231561666,0,1.44475294950759,0,0,0,2.14882720709979,0,0,0,0,0,0,0,0.0671834724867263,18.0149941771202,0,0,0,0,0.0984274815147488,0,0.795229689809303,0,0,0.137539436597234,0,0,0,1.09349201984444,0,0,0,4.22401346077626,4.12360880465543,0,0,0,0,1.08599920350743,5.18532894720761,0.653174720218818,0,0,12.7791016339066,0.566560457600628,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628216385000937,0,0.610131324509816,0,0,0,0.310482014706917,0.138348634936231,0.249960815924213,0,0,0,0.936669811613763,0.434763085832475,0.149254802886874,0,0,2.46223906857616,1.006271607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| ||
|short_description=p4@BDNF | |||
}} | }} |
Latest revision as of 12:33, 17 September 2015
Short description: | p4@BDNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_BDNF_5end |
Coexpression cluster: | C1629_hepatic_spindle_Fibroblast_Smooth_liposarcoma_papillary_Ciliary |
Association with transcript: | 79bp_to_ENST00000395980, NM_170733, uc001mrv.2_5end |
EntrezGene: | BDNF |
HGNC: | 1033 |
UniProt: | P23560 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.50e-19 | 32 |
smooth muscle cell | 4.08e-19 | 43 |
smooth muscle myoblast | 4.08e-19 | 43 |
fibroblast | 9.25e-14 | 76 |
muscle cell | 3.36e-13 | 55 |
muscle precursor cell | 4.03e-13 | 58 |
myoblast | 4.03e-13 | 58 |
multi-potent skeletal muscle stem cell | 4.03e-13 | 58 |
skin fibroblast | 1.49e-12 | 23 |
electrically responsive cell | 3.71e-11 | 61 |
electrically active cell | 3.71e-11 | 61 |
smooth muscle cell of the subclavian artery | 2.37e-09 | 5 |
mesodermal cell | 5.92e-09 | 121 |
multi fate stem cell | 8.16e-08 | 427 |
somatic stem cell | 2.04e-07 | 433 |
stem cell | 6.56e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.26e-07 | 5 |
myotonic disease | 1.26e-07 | 5 |
muscle tissue disease | 1.26e-07 | 5 |
myopathy | 1.26e-07 | 5 |
muscular disease | 1.26e-07 | 5 |
myotonic dystrophy | 1.26e-07 | 5 |