FFCP PHASE1:Hg19::chr3:194090463..194090479,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=131578 | |EntrezGene=131578 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20818 | |HGNC=20818 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TF66,B3KWI4 | |UniProt=Q8TF66,B3KWI4 | ||
|association_with_transcript=0bp_to_ENST00000347624,NM_001135057,NM_130830,uc003ftt.2,uc003ftu.2_5end | |association_with_transcript=0bp_to_ENST00000347624,NM_001135057,NM_130830,uc003ftt.2,uc003ftu.2_5end | ||
|cluster_id=chr3:194090463..194090479,- | |||
|coexpression_cluster_id=C2107 | |coexpression_cluster_id=C2107 | ||
|description=CAGE_peak_1_at_LRRC15_5end | |description=CAGE_peak_1_at_LRRC15_5end | ||
|id=chr3:194090463..194090479,- | |id=chr3:194090463..194090479,- | ||
|ontology_enrichment_celltype=CL:0000055!7.47e-32!180;CL:0000057!5.41e-18!75;CL:0000359!3.92e-11!32;CL:0000192!4.48e-10!42;CL:0000514!4.48e-10!42;CL:0002334!5.91e-09!12;CL:0000680!8.07e-09!57;CL:0000056!8.07e-09!57;CL:0000355!8.07e-09!57;CL:0000187!1.25e-08!54;CL:0002620!1.44e-08!23;CL:0000393!4.81e-08!60;CL:0000211!4.81e-08!60;CL:0000183!9.55e-08!59;CL:0002539!1.93e-07!10 | |ontology_enrichment_celltype=CL:0000055!7.47e-32!180;CL:0000057!5.41e-18!75;CL:0000359!3.92e-11!32;CL:0000192!4.48e-10!42;CL:0000514!4.48e-10!42;CL:0002334!5.91e-09!12;CL:0000680!8.07e-09!57;CL:0000056!8.07e-09!57;CL:0000355!8.07e-09!57;CL:0000187!1.25e-08!54;CL:0002620!1.44e-08!23;CL:0000393!4.81e-08!60;CL:0000211!4.81e-08!60;CL:0000183!9.55e-08!59;CL:0002539!1.93e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000359;2.14e-14;32!CL:0002334;7.84e-12;12!CL:0002620;6.53e-11;23!CL:0002539;9.84e-10;10!CL:0000192;3.33e-08;43!CL:0000057;2.42e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.71e-20,76;CL:0000359,3.16e-15,32;CL:0002334,7.29e-12,12;CL:0002620,6.44e-11,23;CL:0000192,9.19e-11,43;CL:0000514,9.19e-11,43;CL:0002539,9.28e-10,10;CL:0000048,1.06e-07,427;CL:0000723,3.67e-07,433;CL:0000680,4.86e-07,58;CL:0000056,4.86e-07,58;CL:0000355,4.86e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;3.33e-08;43 | |||
|ontology_enrichment_disease=DOID:2394!4.76e-08!14 | |ontology_enrichment_disease=DOID:2394!4.76e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;9.06e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.18e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004872!1.04e-10!84;UBERON:0002199!2.04e-10!45;UBERON:0002416!2.04e-10!45;UBERON:0001637!2.99e-10!42;UBERON:0003509!2.99e-10!42;UBERON:0004572!2.99e-10!42;UBERON:0000914!6.05e-10!83;UBERON:0002329!6.05e-10!83;UBERON:0003077!6.05e-10!83;UBERON:0003059!6.05e-10!83;UBERON:0007282!6.05e-10!83;UBERON:0009618!6.05e-10!83;UBERON:0007285!6.05e-10!83;UBERON:0004573!7.87e-10!33;UBERON:0004571!7.87e-10!33;UBERON:0004290!1.26e-09!70;UBERON:0002385!1.95e-09!63;UBERON:0001015!1.95e-09!63;UBERON:0000383!1.95e-09!63;UBERON:0001134!3.19e-09!61;UBERON:0002036!3.19e-09!61;UBERON:0003082!3.19e-09!61;UBERON:0003102!3.47e-09!95;UBERON:0002097!9.46e-09!40;UBERON:0000486!2.71e-08!82;UBERON:0001981!4.33e-08!60;UBERON:0007500!4.33e-08!60;UBERON:0004537!4.33e-08!60;UBERON:0006965!4.33e-08!60;UBERON:0000475!4.57e-08!365;UBERON:0004237!1.93e-07!10;UBERON:0004695!1.93e-07!10;UBERON:0002111!1.93e-07!10;UBERON:0004178!1.93e-07!10;UBERON:0000055!2.76e-07!69;UBERON:0004458!2.99e-07!49;UBERON:0000992!3.42e-07!13;UBERON:0000468!4.01e-07!659 | |ontology_enrichment_uberon=UBERON:0004872!1.04e-10!84;UBERON:0002199!2.04e-10!45;UBERON:0002416!2.04e-10!45;UBERON:0001637!2.99e-10!42;UBERON:0003509!2.99e-10!42;UBERON:0004572!2.99e-10!42;UBERON:0000914!6.05e-10!83;UBERON:0002329!6.05e-10!83;UBERON:0003077!6.05e-10!83;UBERON:0003059!6.05e-10!83;UBERON:0007282!6.05e-10!83;UBERON:0009618!6.05e-10!83;UBERON:0007285!6.05e-10!83;UBERON:0004573!7.87e-10!33;UBERON:0004571!7.87e-10!33;UBERON:0004290!1.26e-09!70;UBERON:0002385!1.95e-09!63;UBERON:0001015!1.95e-09!63;UBERON:0000383!1.95e-09!63;UBERON:0001134!3.19e-09!61;UBERON:0002036!3.19e-09!61;UBERON:0003082!3.19e-09!61;UBERON:0003102!3.47e-09!95;UBERON:0002097!9.46e-09!40;UBERON:0000486!2.71e-08!82;UBERON:0001981!4.33e-08!60;UBERON:0007500!4.33e-08!60;UBERON:0004537!4.33e-08!60;UBERON:0006965!4.33e-08!60;UBERON:0000475!4.57e-08!365;UBERON:0004237!1.93e-07!10;UBERON:0004695!1.93e-07!10;UBERON:0002111!1.93e-07!10;UBERON:0004178!1.93e-07!10;UBERON:0000055!2.76e-07!69;UBERON:0004458!2.99e-07!49;UBERON:0000992!3.42e-07!13;UBERON:0000468!4.01e-07!659 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.79e-13;33!UBERON:0004571;2.79e-13;33!UBERON:0001637;1.17e-10;42!UBERON:0003509;1.17e-10;42!UBERON:0004572;1.17e-10;42!UBERON:0004237;9.84e-10;10!UBERON:0004695;9.84e-10;10!UBERON:0002111;9.84e-10;10!UBERON:0004178;9.84e-10;10!UBERON:0002097;6.42e-09;41!UBERON:0002199;5.46e-08;46!UBERON:0002416;5.46e-08;46!UBERON:0000947;6.77e-08;21!UBERON:0010191;6.77e-08;21!UBERON:0000992;1.53e-07;13!UBERON:0003102;2.66e-07;50 | |||
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| ||
|short_description=p1@LRRC15 | |short_description=p1@LRRC15 | ||
}} | }} |
Latest revision as of 12:30, 17 September 2015
Short description: | p1@LRRC15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC15_5end |
Coexpression cluster: | C2107_Fibroblast_Preadipocyte_mesenchymal_Chondrocyte_glioblastoma_Saos2_Smooth |
Association with transcript: | 0bp_to_ENST00000347624, NM_001135057, NM_130830, uc003ftt.2, uc003ftu.2_5end |
EntrezGene: | LRRC15 |
HGNC: | 20818 |
UniProt: | Q8TF66B3KWI4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.71e-20 | 76 |
vascular associated smooth muscle cell | 3.16e-15 | 32 |
preadipocyte | 7.29e-12 | 12 |
skin fibroblast | 6.44e-11 | 23 |
smooth muscle cell | 9.19e-11 | 43 |
smooth muscle myoblast | 9.19e-11 | 43 |
aortic smooth muscle cell | 9.28e-10 | 10 |
multi fate stem cell | 1.06e-07 | 427 |
somatic stem cell | 3.67e-07 | 433 |
muscle precursor cell | 4.86e-07 | 58 |
myoblast | 4.86e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.86e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.18e-09 | 14 |