FFCP PHASE1:Hg19::chr11:27722021..27722038,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=627 | |EntrezGene=627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1033 | |HGNC=1033 | ||
|TSSclassifier=strong | |||
|UniProt=P23560 | |UniProt=P23560 | ||
|association_with_transcript=0bp_to_ENST00000356660,ENST00000418212,ENST00000533246,NM_001143813,NM_001143814,NM_001709,uc001mru.2,uc009yjd.2,uc010rdw.1_5end | |association_with_transcript=0bp_to_ENST00000356660,ENST00000418212,ENST00000533246,NM_001143813,NM_001143814,NM_001709,uc001mru.2,uc009yjd.2,uc010rdw.1_5end | ||
|cluster_id=chr11:27722021..27722038,- | |||
|coexpression_cluster_id=C1629 | |coexpression_cluster_id=C1629 | ||
|description=CAGE_peak_2_at_BDNF_5end | |description=CAGE_peak_2_at_BDNF_5end | ||
|id=chr11:27722021..27722038,- | |id=chr11:27722021..27722038,- | ||
|ontology_enrichment_celltype=CL:0000055!7.65e-40!180;CL:0000057!1.35e-18!75;CL:0000192!2.64e-18!42;CL:0000514!2.64e-18!42;CL:0000187!1.76e-16!54;CL:0000359!2.58e-16!32;CL:0000183!3.90e-16!59;CL:0000680!9.88e-16!57;CL:0000056!9.88e-16!57;CL:0000355!9.88e-16!57;CL:0000393!1.87e-15!60;CL:0000211!1.87e-15!60;CL:0000222!9.40e-12!119;CL:0000548!1.01e-09!679;CL:0000004!1.01e-09!679;CL:0000255!1.01e-09!679;CL:0002321!1.15e-09!248;CL:0000220!2.13e-09!246;CL:0000012!3.70e-09!682;CL:0002620!6.16e-08!23 | |ontology_enrichment_celltype=CL:0000055!7.65e-40!180;CL:0000057!1.35e-18!75;CL:0000192!2.64e-18!42;CL:0000514!2.64e-18!42;CL:0000187!1.76e-16!54;CL:0000359!2.58e-16!32;CL:0000183!3.90e-16!59;CL:0000680!9.88e-16!57;CL:0000056!9.88e-16!57;CL:0000355!9.88e-16!57;CL:0000393!1.87e-15!60;CL:0000211!1.87e-15!60;CL:0000222!9.40e-12!119;CL:0000548!1.01e-09!679;CL:0000004!1.01e-09!679;CL:0000255!1.01e-09!679;CL:0002321!1.15e-09!248;CL:0000220!2.13e-09!246;CL:0000012!3.70e-09!682;CL:0002620!6.16e-08!23 | ||
|ontology_enrichment_celltype_v019=CL:0000359;4.41e-19;32!CL:0000192;1.00e-16;43!CL:0000187;1.59e-10;55!CL:0002620;7.40e-09;23!CL:0000393;1.19e-08;61!CL:0000211;1.19e-08;61!CL:0000057;2.39e-08;73!CL:0002539;1.38e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.69e-23,43;CL:0000514,1.69e-23,43;CL:0000359,1.96e-20,32;CL:0000187,5.91e-20,55;CL:0000057,1.96e-19,76;CL:0000680,8.54e-19,58;CL:0000056,8.54e-19,58;CL:0000355,8.54e-19,58;CL:0000393,4.31e-18,61;CL:0000211,4.31e-18,61;CL:0000222,6.82e-13,121;CL:0002620,4.27e-09,23;CL:0002321,5.97e-09,250;CL:0002539,1.25e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;1.00e-16;43!CL:0000355;1.32e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.17e-14!83;UBERON:0002329!1.17e-14!83;UBERON:0003077!1.17e-14!83;UBERON:0003059!1.17e-14!83;UBERON:0007282!1.17e-14!83;UBERON:0009618!1.17e-14!83;UBERON:0007285!1.17e-14!83;UBERON:0001134!1.86e-13!61;UBERON:0002036!1.86e-13!61;UBERON:0003082!1.86e-13!61;UBERON:0005256!1.96e-13!143;UBERON:0004290!2.87e-13!70;UBERON:0002385!4.70e-13!63;UBERON:0001015!4.70e-13!63;UBERON:0000383!4.70e-13!63;UBERON:0000475!1.97e-12!365;UBERON:0000481!3.35e-11!347;UBERON:0000486!3.57e-11!82;UBERON:0001637!5.66e-11!42;UBERON:0003509!5.66e-11!42;UBERON:0004572!5.66e-11!42;UBERON:0002100!2.06e-10!216;UBERON:0004573!1.91e-09!33;UBERON:0004571!1.91e-09!33;UBERON:0002049!2.20e-09!79;UBERON:0007798!2.20e-09!79;UBERON:0003104!6.54e-09!238;UBERON:0009142!6.54e-09!238;UBERON:0003914!2.37e-08!118;UBERON:0004872!6.08e-08!84;UBERON:0000119!9.75e-08!312;UBERON:0000490!1.04e-07!138;UBERON:0000468!1.07e-07!659;UBERON:0000483!1.15e-07!309;UBERON:0001981!1.90e-07!60;UBERON:0007500!1.90e-07!60;UBERON:0004537!1.90e-07!60;UBERON:0006965!1.90e-07!60;UBERON:0001009!2.40e-07!113;UBERON:0004535!2.93e-07!110;UBERON:0001135!5.45e-07!15 | |ontology_enrichment_uberon=UBERON:0000914!1.17e-14!83;UBERON:0002329!1.17e-14!83;UBERON:0003077!1.17e-14!83;UBERON:0003059!1.17e-14!83;UBERON:0007282!1.17e-14!83;UBERON:0009618!1.17e-14!83;UBERON:0007285!1.17e-14!83;UBERON:0001134!1.86e-13!61;UBERON:0002036!1.86e-13!61;UBERON:0003082!1.86e-13!61;UBERON:0005256!1.96e-13!143;UBERON:0004290!2.87e-13!70;UBERON:0002385!4.70e-13!63;UBERON:0001015!4.70e-13!63;UBERON:0000383!4.70e-13!63;UBERON:0000475!1.97e-12!365;UBERON:0000481!3.35e-11!347;UBERON:0000486!3.57e-11!82;UBERON:0001637!5.66e-11!42;UBERON:0003509!5.66e-11!42;UBERON:0004572!5.66e-11!42;UBERON:0002100!2.06e-10!216;UBERON:0004573!1.91e-09!33;UBERON:0004571!1.91e-09!33;UBERON:0002049!2.20e-09!79;UBERON:0007798!2.20e-09!79;UBERON:0003104!6.54e-09!238;UBERON:0009142!6.54e-09!238;UBERON:0003914!2.37e-08!118;UBERON:0004872!6.08e-08!84;UBERON:0000119!9.75e-08!312;UBERON:0000490!1.04e-07!138;UBERON:0000468!1.07e-07!659;UBERON:0000483!1.15e-07!309;UBERON:0001981!1.90e-07!60;UBERON:0007500!1.90e-07!60;UBERON:0004537!1.90e-07!60;UBERON:0006965!1.90e-07!60;UBERON:0001009!2.40e-07!113;UBERON:0004535!2.93e-07!110;UBERON:0001135!5.45e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.20e-11;33!UBERON:0004571;7.20e-11;33!UBERON:0001637;5.48e-09;42!UBERON:0003509;5.48e-09;42!UBERON:0004572;5.48e-09;42!UBERON:0001135;9.02e-09;15!UBERON:0004237;1.38e-07;10!UBERON:0004695;1.38e-07;10!UBERON:0002111;1.38e-07;10!UBERON:0004178;1.38e-07;10!UBERON:0007625;6.31e-07;11 | |||
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| ||
|short_description=p2@BDNF | |short_description=p2@BDNF | ||
}} | }} |
Latest revision as of 12:28, 17 September 2015
Short description: | p2@BDNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_BDNF_5end |
Coexpression cluster: | C1629_hepatic_spindle_Fibroblast_Smooth_liposarcoma_papillary_Ciliary |
Association with transcript: | 0bp_to_ENST00000356660, ENST00000418212, ENST00000533246, NM_001143813, NM_001143814, NM_001709, uc001mru.2, uc009yjd.2, uc010rdw.1_5end |
EntrezGene: | BDNF |
HGNC: | 1033 |
UniProt: | P23560 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.69e-23 | 43 |
smooth muscle myoblast | 1.69e-23 | 43 |
vascular associated smooth muscle cell | 1.96e-20 | 32 |
muscle cell | 5.91e-20 | 55 |
fibroblast | 1.96e-19 | 76 |
muscle precursor cell | 8.54e-19 | 58 |
myoblast | 8.54e-19 | 58 |
multi-potent skeletal muscle stem cell | 8.54e-19 | 58 |
electrically responsive cell | 4.31e-18 | 61 |
electrically active cell | 4.31e-18 | 61 |
mesodermal cell | 6.82e-13 | 121 |
skin fibroblast | 4.27e-09 | 23 |
embryonic cell | 5.97e-09 | 250 |
aortic smooth muscle cell | 1.25e-07 | 10 |