FFCP PHASE1:Hg19::chr11:27528301..27528336,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:27528301..27528336,- to FFCP PHASE1:Hg19::chr11:27528301..27528336,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55327 | |EntrezGene=55327 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17789 | |HGNC=17789 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NUP9,G3V1D4 | |UniProt=Q9NUP9,G3V1D4 | ||
|association_with_transcript=0bp_to_ENST00000278193,ENST00000524596,NM_018362,uc001mrl.2,uc009yii.2_5end | |||
|cluster_id=chr11:27528301..27528336,- | |||
|description=CAGE_peak_1_at_LIN7C_5end | |||
|id=chr11:27528301..27528336,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;9.07e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.65e-16!94;UBERON:0001016!4.65e-16!94;UBERON:0005743!2.91e-15!86;UBERON:0007023!7.56e-15!115;UBERON:0001017!8.94e-15!82;UBERON:0004121!9.53e-14!169;UBERON:0001049!2.24e-13!57;UBERON:0005068!2.24e-13!57;UBERON:0006241!2.24e-13!57;UBERON:0007135!2.24e-13!57;UBERON:0000924!3.47e-13!173;UBERON:0006601!3.47e-13!173;UBERON:0000955!5.80e-13!69;UBERON:0006238!5.80e-13!69;UBERON:0000033!6.07e-13!123;UBERON:0000153!8.23e-13!129;UBERON:0007811!8.23e-13!129;UBERON:0002780!1.04e-12!41;UBERON:0001890!1.04e-12!41;UBERON:0006240!1.04e-12!41;UBERON:0002616!5.37e-12!59;UBERON:0003080!6.32e-12!42;UBERON:0001893!9.78e-11!34;UBERON:0003075!1.67e-10!86;UBERON:0007284!1.67e-10!86;UBERON:0002020!2.40e-10!34;UBERON:0003528!2.40e-10!34;UBERON:0002791!3.45e-10!33;UBERON:0001869!3.91e-10!32;UBERON:0002346!9.16e-10!90;UBERON:0003056!2.60e-08!61;UBERON:0002619!3.70e-08!22;UBERON:0000062!5.55e-08!511;UBERON:0001950!9.99e-08!20;UBERON:0000956!1.65e-07!25;UBERON:0000203!1.65e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.17e-09;41!UBERON:0001890;2.17e-09;41!UBERON:0001893;2.69e-09;34!UBERON:0001869;4.91e-09;32!UBERON:0000073;5.03e-09;53!UBERON:0002616;5.03e-09;53!UBERON:0002791;6.13e-09;32!UBERON:0003528;6.56e-09;34!UBERON:0002020;6.56e-09;34!UBERON:0002619;3.81e-08;22!UBERON:0001950;1.04e-07;20!UBERON:0000956;1.74e-07;25!UBERON:0000203;1.74e-07;25!UBERON:0001017;2.26e-07;75!UBERON:0001016;3.31e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.94e-16,89;UBERON:0001017,2.30e-15,81;UBERON:0007023,2.18e-14,114;UBERON:0001049,4.51e-14,56;UBERON:0005068,4.51e-14,56;UBERON:0006241,4.51e-14,56;UBERON:0007135,4.51e-14,56;UBERON:0000955,1.46e-13,68;UBERON:0006238,1.46e-13,68;UBERON:0011216,2.24e-13,223;UBERON:0000073,2.47e-13,53;UBERON:0002616,2.47e-13,53;UBERON:0004121,9.13e-13,171;UBERON:0000924,9.13e-13,171;UBERON:0006601,9.13e-13,171;UBERON:0002780,1.04e-12,41;UBERON:0001890,1.04e-12,41;UBERON:0003080,1.04e-12,41;UBERON:0006240,1.04e-12,41;UBERON:0001893,9.78e-11,34;UBERON:0003528,2.40e-10,34;UBERON:0002020,2.40e-10,34;UBERON:0001869,3.91e-10,32;UBERON:0002791,6.46e-10,32;UBERON:0003075,1.91e-09,82;UBERON:0007284,1.91e-09,82;UBERON:0010371,3.44e-09,104;UBERON:0002346,9.53e-09,86;UBERON:0003056,2.89e-08,61;UBERON:0002619,3.70e-08,22;UBERON:0001950,9.99e-08,20;UBERON:0000956,1.65e-07,25;UBERON:0000203,1.65e-07,25 | |||
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| ||
|short_description=p1@LIN7C | |||
}} | }} |
Latest revision as of 12:20, 17 September 2015
Short description: | p1@LIN7C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIN7C_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000278193, ENST00000524596, NM_018362, uc001mrl.2, uc009yii.2_5end |
EntrezGene: | LIN7C |
HGNC: | 17789 |
UniProt: | Q9NUP9G3V1D4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 3.94e-16 | 89 |
central nervous system | 2.30e-15 | 81 |
adult organism | 2.18e-14 | 114 |
neural tube | 4.51e-14 | 56 |
neural rod | 4.51e-14 | 56 |
future spinal cord | 4.51e-14 | 56 |
neural keel | 4.51e-14 | 56 |
brain | 1.46e-13 | 68 |
future brain | 1.46e-13 | 68 |
organ system subdivision | 2.24e-13 | 223 |
regional part of nervous system | 2.47e-13 | 53 |
regional part of brain | 2.47e-13 | 53 |
ectoderm-derived structure | 9.13e-13 | 171 |
ectoderm | 9.13e-13 | 171 |
presumptive ectoderm | 9.13e-13 | 171 |
regional part of forebrain | 1.04e-12 | 41 |
forebrain | 1.04e-12 | 41 |
anterior neural tube | 1.04e-12 | 41 |
future forebrain | 1.04e-12 | 41 |
telencephalon | 9.78e-11 | 34 |
brain grey matter | 2.40e-10 | 34 |
gray matter | 2.40e-10 | 34 |
cerebral hemisphere | 3.91e-10 | 32 |
regional part of telencephalon | 6.46e-10 | 32 |
neural plate | 1.91e-09 | 82 |
presumptive neural plate | 1.91e-09 | 82 |
ecto-epithelium | 3.44e-09 | 104 |
neurectoderm | 9.53e-09 | 86 |
pre-chordal neural plate | 2.89e-08 | 61 |
regional part of cerebral cortex | 3.70e-08 | 22 |
neocortex | 9.99e-08 | 20 |
cerebral cortex | 1.65e-07 | 25 |
pallium | 1.65e-07 | 25 |