FFCP PHASE1:Hg19::chr10:18629608..18629619,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=783 | |EntrezGene=783 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1402 | |HGNC=1402 | ||
|TSSclassifier=strong | |||
|UniProt=Q08289,Q5QJ99,Q6TME1,Q6TME0 | |UniProt=Q08289,Q5QJ99,Q6TME1,Q6TME0 | ||
|association_with_transcript=0bp_to_NM_201590,uc001ipy.2,uc001ipz.2,uc009xkb.1,uc010qcm.1_5end | |association_with_transcript=0bp_to_NM_201590,uc001ipy.2,uc001ipz.2,uc009xkb.1,uc010qcm.1_5end | ||
|cluster_id=chr10:18629608..18629619,+ | |||
|coexpression_cluster_id=C56 | |||
|description=CAGE_peak_17_at_CACNB2_5end | |description=CAGE_peak_17_at_CACNB2_5end | ||
|id=chr10:18629608..18629619,+ | |id=chr10:18629608..18629619,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004140;1.53e-21;1!UBERON:0010227;2.54e-21;1!UBERON:0000358;4.22e-21;1!UBERON:0010226;4.22e-21;1!UBERON:0005062;6.33e-21;4!UBERON:0007284;6.33e-21;4 | |||
|ontology_enrichment_disease=DOID:114!4.02e-11!2 | |||
|ontology_enrichment_disease_v019=DOID:114;2.72e-40;2!DOID:178;7.72e-21;1!DOID:326;7.72e-21;1!DOID:3978;7.72e-21;1!DOID:3394;7.72e-21;1!DOID:5844;7.72e-21;1!DOID:1287;9.94e-21;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.01e-40,2;DOID:178,7.72e-21,1;DOID:326,7.72e-21,1;DOID:3978,7.72e-21,1;DOID:3394,7.72e-21,1;DOID:5844,7.72e-21,1;DOID:1287,1.05e-20,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.80e-37!115;UBERON:0003075!8.85e-21!86;UBERON:0007284!8.85e-21!86;UBERON:0002346!1.21e-19!90;UBERON:0001049!1.08e-16!57;UBERON:0005068!1.08e-16!57;UBERON:0006241!1.08e-16!57;UBERON:0007135!1.08e-16!57;UBERON:0005743!2.53e-16!86;UBERON:0003978!8.34e-16!3;UBERON:0009751!8.34e-16!3;UBERON:0000946!8.34e-16!3;UBERON:0002523!8.34e-16!3;UBERON:0005983!8.34e-16!3;UBERON:0002165!8.34e-16!3;UBERON:0002062!8.34e-16!3;UBERON:0007280!8.34e-16!3;UBERON:0004151!9.20e-16!3;UBERON:0001017!1.91e-15!82;UBERON:0000073!2.17e-14!94;UBERON:0001016!2.17e-14!94;UBERON:0002616!6.94e-14!59;UBERON:0007100!1.46e-13!27;UBERON:0002780!2.84e-13!41;UBERON:0001890!2.84e-13!41;UBERON:0006240!2.84e-13!41;UBERON:0000955!5.27e-13!69;UBERON:0006238!5.27e-13!69;UBERON:0003080!6.58e-13!42;UBERON:0002081!4.65e-11!2;UBERON:0002133!5.13e-11!2;UBERON:0000007!1.42e-10!2;UBERON:0002360!2.76e-10!2;UBERON:0000094!2.76e-10!2;UBERON:0007645!2.76e-10!2;UBERON:0004121!4.43e-10!169;UBERON:0003056!9.19e-10!61;UBERON:0000924!9.88e-10!173;UBERON:0006601!9.88e-10!173;UBERON:0002791!2.61e-09!33;UBERON:0003103!2.91e-09!69;UBERON:0001871!3.06e-09!7;UBERON:0001893!5.30e-09!34;UBERON:0000349!5.79e-09!5;UBERON:0000033!5.95e-09!123;UBERON:0002619!8.06e-09!22;UBERON:0002342!1.64e-08!14;UBERON:0005062!1.64e-08!14;UBERON:0000025!1.76e-08!194;UBERON:0000153!2.34e-08!129;UBERON:0007811!2.34e-08!129;UBERON:0000956!1.06e-07!25;UBERON:0000203!1.06e-07!25;UBERON:0001869!1.30e-07!32;UBERON:0001896!3.18e-07!3;UBERON:0005290!3.18e-07!3;UBERON:0010096!3.18e-07!3;UBERON:0001950!3.65e-07!20;UBERON:0002020!4.14e-07!34;UBERON:0003528!4.14e-07!34;UBERON:0000948!5.22e-07!24;UBERON:0005498!5.22e-07!24;UBERON:0004140!5.22e-07!24;UBERON:0009881!5.22e-07!24;UBERON:0004141!5.22e-07!24;UBERON:0003084!5.22e-07!24;UBERON:0007005!5.22e-07!24;UBERON:0004139!5.22e-07!24;UBERON:0004291!5.22e-07!24;UBERON:0000062!9.35e-07!511 | |ontology_enrichment_uberon=UBERON:0007023!1.80e-37!115;UBERON:0003075!8.85e-21!86;UBERON:0007284!8.85e-21!86;UBERON:0002346!1.21e-19!90;UBERON:0001049!1.08e-16!57;UBERON:0005068!1.08e-16!57;UBERON:0006241!1.08e-16!57;UBERON:0007135!1.08e-16!57;UBERON:0005743!2.53e-16!86;UBERON:0003978!8.34e-16!3;UBERON:0009751!8.34e-16!3;UBERON:0000946!8.34e-16!3;UBERON:0002523!8.34e-16!3;UBERON:0005983!8.34e-16!3;UBERON:0002165!8.34e-16!3;UBERON:0002062!8.34e-16!3;UBERON:0007280!8.34e-16!3;UBERON:0004151!9.20e-16!3;UBERON:0001017!1.91e-15!82;UBERON:0000073!2.17e-14!94;UBERON:0001016!2.17e-14!94;UBERON:0002616!6.94e-14!59;UBERON:0007100!1.46e-13!27;UBERON:0002780!2.84e-13!41;UBERON:0001890!2.84e-13!41;UBERON:0006240!2.84e-13!41;UBERON:0000955!5.27e-13!69;UBERON:0006238!5.27e-13!69;UBERON:0003080!6.58e-13!42;UBERON:0002081!4.65e-11!2;UBERON:0002133!5.13e-11!2;UBERON:0000007!1.42e-10!2;UBERON:0002360!2.76e-10!2;UBERON:0000094!2.76e-10!2;UBERON:0007645!2.76e-10!2;UBERON:0004121!4.43e-10!169;UBERON:0003056!9.19e-10!61;UBERON:0000924!9.88e-10!173;UBERON:0006601!9.88e-10!173;UBERON:0002791!2.61e-09!33;UBERON:0003103!2.91e-09!69;UBERON:0001871!3.06e-09!7;UBERON:0001893!5.30e-09!34;UBERON:0000349!5.79e-09!5;UBERON:0000033!5.95e-09!123;UBERON:0002619!8.06e-09!22;UBERON:0002342!1.64e-08!14;UBERON:0005062!1.64e-08!14;UBERON:0000025!1.76e-08!194;UBERON:0000153!2.34e-08!129;UBERON:0007811!2.34e-08!129;UBERON:0000956!1.06e-07!25;UBERON:0000203!1.06e-07!25;UBERON:0001869!1.30e-07!32;UBERON:0001896!3.18e-07!3;UBERON:0005290!3.18e-07!3;UBERON:0010096!3.18e-07!3;UBERON:0001950!3.65e-07!20;UBERON:0002020!4.14e-07!34;UBERON:0003528!4.14e-07!34;UBERON:0000948!5.22e-07!24;UBERON:0005498!5.22e-07!24;UBERON:0004140!5.22e-07!24;UBERON:0009881!5.22e-07!24;UBERON:0004141!5.22e-07!24;UBERON:0003084!5.22e-07!24;UBERON:0007005!5.22e-07!24;UBERON:0004139!5.22e-07!24;UBERON:0004291!5.22e-07!24;UBERON:0000062!9.35e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.23e-50;25!UBERON:0003978;1.59e-27;3!UBERON:0000946;1.59e-27;3!UBERON:0004151;1.95e-27;3!UBERON:0000948;8.17e-23;22!UBERON:0002146;1.88e-21;1!UBERON:0005623;1.88e-21;1!UBERON:0002079;2.54e-21;1!UBERON:0002084;4.22e-21;1!UBERON:0002135;4.22e-21;1!UBERON:0002082;4.22e-21;1!UBERON:0002081;2.35e-11;2!UBERON:0002133;3.02e-11;2!UBERON:0003103;4.35e-10;61!UBERON:0010313;5.80e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,1.71e-46,27;UBERON:0003978,1.39e-27,3;UBERON:0009751,1.39e-27,3;UBERON:0000946,1.39e-27,3;UBERON:0002523,1.39e-27,3;UBERON:0005983,1.39e-27,3;UBERON:0002165,1.39e-27,3;UBERON:0002062,1.39e-27,3;UBERON:0007280,1.39e-27,3;UBERON:0004151,1.82e-27,3;UBERON:0002146,1.88e-21,1;UBERON:0005623,1.88e-21,1;UBERON:0002079,2.30e-21,1;UBERON:0002135,3.45e-21,1;UBERON:0002084,4.22e-21,1;UBERON:0002082,4.22e-21,1;UBERON:0010226,4.22e-21,1;UBERON:0000948,5.82e-21,24;UBERON:0005498,5.82e-21,24;UBERON:0004140,5.82e-21,24;UBERON:0009881,5.82e-21,24;UBERON:0004141,5.82e-21,24;UBERON:0003084,5.82e-21,24;UBERON:0007005,5.82e-21,24;UBERON:0004139,5.82e-21,24;UBERON:0004291,5.82e-21,24;UBERON:0003103,2.33e-18,68;UBERON:0004797,2.00e-12,7;UBERON:0002081,2.23e-11,2;UBERON:0010227,2.23e-11,2;UBERON:0002133,2.73e-11,2;UBERON:0001009,5.12e-11,112;UBERON:0010313,5.57e-09,10;UBERON:0002342,5.57e-09,10;UBERON:0005062,5.57e-09,10;UBERON:0007023,2.77e-08,114 | |||
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|short_description=p17@CACNB2 | |short_description=p17@CACNB2 | ||
}} | }} |
Latest revision as of 12:03, 17 September 2015
Short description: | p17@CACNB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_CACNB2_5end |
Coexpression cluster: | C56_heart_left_umbilical_skeletal_penis_diaphragm_tongue |
Association with transcript: | 0bp_to_NM_201590, uc001ipy.2, uc001ipz.2, uc009xkb.1, uc010qcm.1_5end |
EntrezGene: | CACNB2 |
HGNC: | 1402 |
UniProt: | Q08289Q5QJ99Q6TME1Q6TME0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 1.71e-46 | 27 |
valve | 1.39e-27 | 3 |
cardiac mesenchyme | 1.39e-27 | 3 |
cardial valve | 1.39e-27 | 3 |
tunica intima | 1.39e-27 | 3 |
heart layer | 1.39e-27 | 3 |
endocardium | 1.39e-27 | 3 |
endocardial cushion | 1.39e-27 | 3 |
presumptive endocardium | 1.39e-27 | 3 |
cardiac chamber | 1.82e-27 | 3 |
pulmonary valve | 1.88e-21 | 1 |
semi-lunar valve | 1.88e-21 | 1 |
left cardiac atrium | 2.30e-21 | 1 |
mitral valve | 3.45e-21 | 1 |
heart left ventricle | 4.22e-21 | 1 |
cardiac ventricle | 4.22e-21 | 1 |
future cardiac ventricle | 4.22e-21 | 1 |
heart | 5.82e-21 | 24 |
primitive heart tube | 5.82e-21 | 24 |
primary heart field | 5.82e-21 | 24 |
anterior lateral plate mesoderm | 5.82e-21 | 24 |
heart tube | 5.82e-21 | 24 |
heart primordium | 5.82e-21 | 24 |
cardiac mesoderm | 5.82e-21 | 24 |
cardiogenic plate | 5.82e-21 | 24 |
heart rudiment | 5.82e-21 | 24 |
compound organ | 2.33e-18 | 68 |
blood vessel layer | 2.00e-12 | 7 |
cardiac atrium | 2.23e-11 | 2 |
future cardiac atrium | 2.23e-11 | 2 |
atrioventricular valve | 2.73e-11 | 2 |
circulatory system | 5.12e-11 | 112 |
neural crest-derived structure | 5.57e-09 | 10 |
neural crest | 5.57e-09 | 10 |
neural fold | 5.57e-09 | 10 |
adult organism | 2.77e-08 | 114 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.01e-40 | 2 |
vascular disease | 7.72e-21 | 1 |
ischemia | 7.72e-21 | 1 |
extrinsic cardiomyopathy | 7.72e-21 | 1 |
myocardial ischemia | 7.72e-21 | 1 |
myocardial infarction | 7.72e-21 | 1 |
cardiovascular system disease | 1.05e-20 | 4 |