FFCP PHASE1:Hg19::chr8:22446541..22446558,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:22446541..22446558,+ to FFCP PHASE1:Hg19::chr8:22446541..22446558,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64236 | |EntrezGene=64236 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13992 | |HGNC=13992 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-104bp_to_uc003xcd.1_5end | |||
|cluster_id=chr8:22446541..22446558,+ | |||
|coexpression_cluster_id=C4124 | |||
|description=CAGE_peak_7_at_PDLIM2_5end | |||
|id=chr8:22446541..22446558,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.19e-14!180;CL:0000359!4.23e-12!32;CL:0000192!1.24e-11!42;CL:0000514!1.24e-11!42;CL:0000680!1.39e-11!57;CL:0000056!1.39e-11!57;CL:0000355!1.39e-11!57;CL:0000183!7.90e-10!59;CL:0000187!9.32e-10!54;CL:0000393!1.14e-08!60;CL:0000211!1.14e-08!60;CL:0002334!2.68e-08!12;CL:0002539!5.47e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0002615;1.14e-15;3!CL:0002579;1.19e-15;3!CL:0002334;2.71e-10;12!CL:0000136;1.74e-09;13!CL:0002595;6.02e-09;5!CL:0002548;5.23e-08;6!CL:0000359;1.89e-07;32!CL:0002494;2.33e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,7.69e-16,3;CL:0002579,9.85e-16,3;CL:0002334,2.33e-10,12;CL:0002595,5.86e-09,5;CL:0000359,2.89e-08,32;CL:0000136,3.13e-08,15;CL:0002548,5.50e-08,6;CL:0002494,2.58e-07,16 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.95e-11;11!UBERON:0009497;4.05e-09;13!UBERON:0006215;2.37e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1192;7.70e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:1192,7.71e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0000475!8.61e-13!365;UBERON:0002385!1.23e-12!63;UBERON:0001015!1.23e-12!63;UBERON:0000383!1.23e-12!63;UBERON:0001134!2.51e-12!61;UBERON:0002036!2.51e-12!61;UBERON:0003082!2.51e-12!61;UBERON:0000914!1.54e-11!83;UBERON:0002329!1.54e-11!83;UBERON:0003077!1.54e-11!83;UBERON:0003059!1.54e-11!83;UBERON:0007282!1.54e-11!83;UBERON:0009618!1.54e-11!83;UBERON:0007285!1.54e-11!83;UBERON:0004290!2.57e-11!70;UBERON:0000025!5.86e-11!194;UBERON:0001637!9.32e-10!42;UBERON:0003509!9.32e-10!42;UBERON:0004572!9.32e-10!42;UBERON:0000486!1.30e-09!82;UBERON:0005256!2.47e-09!143;UBERON:0003688!4.22e-09!6;UBERON:0002358!4.22e-09!6;UBERON:0003684!4.22e-09!6;UBERON:0001178!4.22e-09!6;UBERON:0004573!4.56e-09!33;UBERON:0004571!4.56e-09!33;UBERON:0002100!6.82e-09!216;UBERON:0000483!9.14e-09!309;UBERON:0000119!1.84e-08!312;UBERON:0004111!3.55e-08!241;UBERON:0004733!8.64e-08!12;UBERON:0002028!8.64e-08!12;UBERON:0007277!8.64e-08!12;UBERON:0000481!1.48e-07!347;UBERON:0001135!2.00e-07!15;UBERON:0000490!3.48e-07!138;UBERON:0000477!4.06e-07!286;UBERON:0004872!4.10e-07!84;UBERON:0003076!4.25e-07!15;UBERON:0003057!4.25e-07!15;UBERON:0004732!5.33e-07!13;UBERON:0004237!5.47e-07!10;UBERON:0004695!5.47e-07!10;UBERON:0002111!5.47e-07!10;UBERON:0004178!5.47e-07!10;UBERON:0003914!5.55e-07!118;UBERON:0001981!6.97e-07!60;UBERON:0007500!6.97e-07!60;UBERON:0004537!6.97e-07!60;UBERON:0006965!6.97e-07!60;UBERON:0001049!9.51e-07!57;UBERON:0005068!9.51e-07!57;UBERON:0006241!9.51e-07!57;UBERON:0007135!9.51e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.54e-29;6!UBERON:0002358;1.54e-29;6!UBERON:0003684;1.54e-29;6!UBERON:0001178;1.54e-29;6!UBERON:0004457;1.67e-19;9!UBERON:0000042;1.67e-19;9!UBERON:0005406;6.03e-11;2!UBERON:0003834;6.02e-09;5!UBERON:0001533;6.02e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,8.59e-30,6;UBERON:0002358,8.59e-30,6;UBERON:0003684,8.59e-30,6;UBERON:0001178,8.59e-30,6;UBERON:0004457,1.34e-14,12;UBERON:0000042,1.34e-14,12;UBERON:0005406,4.96e-11,2;UBERON:0002100,1.59e-09,199;UBERON:0003834,5.86e-09,5;UBERON:0001533,5.86e-09,5;UBERON:0003914,5.45e-08,117;UBERON:0002417,9.03e-08,60;UBERON:0000916,9.03e-08,60;UBERON:0009569,1.22e-07,112;UBERON:0005256,1.92e-07,122;UBERON:0002329,3.95e-07,71;UBERON:0003059,3.95e-07,71;UBERON:0007282,3.95e-07,71;UBERON:0004290,3.95e-07,71;UBERON:0009618,3.95e-07,71;UBERON:0001134,4.57e-07,62;UBERON:0002036,4.57e-07,62;UBERON:0003082,4.57e-07,62;UBERON:0003077,5.33e-07,72;UBERON:0007285,5.33e-07,72;UBERON:0007524,7.13e-07,73;UBERON:0002385,8.75e-07,64;UBERON:0001015,8.75e-07,64;UBERON:0000383,8.75e-07,64 | |||
|phase1_expression=5.08699461957559,0.214100523890983,9.16203626623813,3.00219895059391,1.78784437770915,2.61701557230111,0,0,0,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0.246242116153576,0.204000691244253,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02290049474824,0.722878304769133,0.50133791063589,0.144846518960824,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,6.46063537203914,0.759783069987479,0.794455084879313,0,0,4.48542080113846,3.20246987189115,1.2333377420858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0.125118519871964,0.277064115484183,0,1.22595118319608,0.150238058906597,0,0.179389635688862,0,0,0,0,0.515281080091258,0.37223371266318,0,0,0,0.184099797284599,0,0,0.10075209822764,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0.643240938192885,1.38134921352481,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.491953754172454,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.234817388471643,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0.387815147273333,0,0,0.26593811658487,2.08014873822732,0,0,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0.479249710983165,0,0,1.30303176000821,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0.35142424497814,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,5.45837177201309,0.153461973288062,0.280660094433074,7.30393150757495,3.07024349440022,1.44768529029247,2.96836132889982,0.154209693802656,0,0.164254312027618,0,0.116210378459959,0,0,0,0.229628896329213,0,0.131124414959424,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,2.78907329578371,0.31481234683064,0.6970372701606,0.308033580176089,0,0,0.37064843820784,1.28812398067792,0,0,0,0,0,0.318203247925937,0.78494864019923,0.179872457583315,0,0.117812402345686,0.404364963146632,1.58510321173008,0,0,0,0,0.818999468447914,0.848432591722276,0,1.10273068709225,1.32687795048244,1.75380354101505,0,0,1.42037263873893,0.30982349809975,0.281695602532241,0,0,1.78335525740625,0,0.422215270595328,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,0.306806047506464,0,3.73247505194169,0,0,0,0,0,1.11136990144637,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10579259931225,2.36438095162838,0.219385397153973,0,0,0,0.455768223388005,0,0,0,0.31900115973192,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0.30607276163049,0,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0.0882561266915003,0,0,0,0.189932387867636,0,0,0,0,0,0,0.514784993585894,0,0.124252535565433,0,0,0,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,2.52209918479682,0,2.04836273998782,1.2362378757175,1.41547442093788,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0.542999601753713,0.864221491201268,0,0,0,0.170388021785422,0,0.293104467356165,2.65013777824443,0.129282956361551,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0.1251909307065,0.573409195690071,0.110929051536852,0.372578417648301,0,0.124980407962107,0.151649117541648,0,0,0,0,0,0.467426619694449,0,0,0.251567901752575,0,0,0.151230923763239,0.15543720058278,0.147855149989634,0,0,0,0,0,1.04349012362347,0,0,0,0,0,0.464033759878494,0,0.800055529326307,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0.368211900503681,0,0,0.511577485214607,0,0,0,0,0,0,0,3.18004350653419,0,0.80057074828547,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0,0.207471757392654,0.484426936895553,0,0,0,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0,0,0,0.270150338473579,0,0,0.380494861163441,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0,1.22345519358297,0.263091094251396,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0.801711364730253,0,0,0,0,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0,1.94228651156368,0.923965261706223,0,0,0,0.397901550322736,0,0,0,0.301925687133347,0.617393264863557,0.218559560503957,0,0,0,0,0,0.4226557275834,1.69927114687817,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,1.0580536810308,0,0.924351257262837,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 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| ||
|short_description=p7@PDLIM2 | |||
}} | }} |
Latest revision as of 11:59, 17 September 2015
Short description: | p7@PDLIM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PDLIM2_5end |
Coexpression cluster: | C4124_Adipocyte_Preadipocyte_Fibroblast_Ewing_basal_Smooth_neurofibroma |
Association with transcript: | -104bp_to_uc003xcd.1_5end |
EntrezGene: | PDLIM2 |
HGNC: | 13992 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 7.69e-16 | 3 |
omentum preadipocyte | 9.85e-16 | 3 |
preadipocyte | 2.33e-10 | 12 |
smooth muscle cell of the subclavian artery | 5.86e-09 | 5 |
vascular associated smooth muscle cell | 2.89e-08 | 32 |
fat cell | 3.13e-08 | 15 |
cardiac fibroblast | 5.50e-08 | 6 |
cardiocyte | 2.58e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
omentum | 8.59e-30 | 6 |
peritoneum | 8.59e-30 | 6 |
abdominal cavity | 8.59e-30 | 6 |
visceral peritoneum | 8.59e-30 | 6 |
cavity lining | 1.34e-14 | 12 |
serous membrane | 1.34e-14 | 12 |
perirenal fat | 4.96e-11 | 2 |
trunk | 1.59e-09 | 199 |
thoracic segment blood vessel | 5.86e-09 | 5 |
subclavian artery | 5.86e-09 | 5 |
epithelial tube | 5.45e-08 | 117 |
abdominal segment of trunk | 9.03e-08 | 60 |
abdomen | 9.03e-08 | 60 |
subdivision of trunk | 1.22e-07 | 112 |
trunk mesenchyme | 1.92e-07 | 122 |
somite | 3.95e-07 | 71 |
presomitic mesoderm | 3.95e-07 | 71 |
presumptive segmental plate | 3.95e-07 | 71 |
dermomyotome | 3.95e-07 | 71 |
trunk paraxial mesoderm | 3.95e-07 | 71 |
skeletal muscle tissue | 4.57e-07 | 62 |
striated muscle tissue | 4.57e-07 | 62 |
myotome | 4.57e-07 | 62 |
paraxial mesoderm | 5.33e-07 | 72 |
presumptive paraxial mesoderm | 5.33e-07 | 72 |
dense mesenchyme tissue | 7.13e-07 | 73 |
muscle tissue | 8.75e-07 | 64 |
musculature | 8.75e-07 | 64 |
musculature of body | 8.75e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system neoplasm | 7.71e-08 | 3 |