FFCP PHASE1:Hg19::chr17:73717531..73717550,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3691 | |EntrezGene=3691 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6158 | |HGNC=6158 | ||
|TSSclassifier=strong | |||
|UniProt=P16144,A0AVL6 | |UniProt=P16144,A0AVL6 | ||
|association_with_transcript=15bp_to_ENST00000200181,ENST00000339591,NM_000213,NM_001005731,uc002jpg.2,uc002jph.2_5end | |association_with_transcript=15bp_to_ENST00000200181,ENST00000339591,NM_000213,NM_001005731,uc002jpg.2,uc002jph.2_5end | ||
|cluster_id=chr17:73717531..73717550,+ | |||
|coexpression_cluster_id=C226 | |coexpression_cluster_id=C226 | ||
|description=CAGE_peak_2_at_ITGB4_5end | |description=CAGE_peak_2_at_ITGB4_5end | ||
|id=chr17:73717531..73717550,+ | |id=chr17:73717531..73717550,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.68e-38!254;CL:0002076!1.11e-19!43;CL:0000223!3.93e-16!59;CL:0000076!9.86e-11!62;CL:0002368!1.02e-09!13;CL:0002251!1.51e-09!21;CL:0002202!9.60e-07!9;CL:0002632!9.60e-07!9 | |ontology_enrichment_celltype=CL:0000066!1.68e-38!254;CL:0002076!1.11e-19!43;CL:0000223!3.93e-16!59;CL:0000076!9.86e-11!62;CL:0002368!1.02e-09!13;CL:0002251!1.51e-09!21;CL:0002202!9.60e-07!9;CL:0002632!9.60e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;6.44e-19;42!CL:0002251;3.58e-13;20!CL:0002368;1.10e-10;13!CL:0002202;5.08e-07;9!CL:0002632;5.08e-07;9!CL:0002159;7.42e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.76e-33,253;CL:0002076,3.57e-25,42;CL:0000223,8.17e-19,58;CL:0002251,3.88e-13,20;CL:0002368,1.02e-10,13;CL:0000076,4.20e-08,63;CL:0002202,4.72e-07,9;CL:0002632,4.72e-07,9;CL:0002159,7.45e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000223;3.81e-10;58 | |||
|ontology_enrichment_disease=DOID:305!1.28e-15!106;DOID:0050687!4.61e-09!143;DOID:299!7.48e-09!25;DOID:1749!8.94e-09!14 | |ontology_enrichment_disease=DOID:305!1.28e-15!106;DOID:0050687!4.61e-09!143;DOID:299!7.48e-09!25;DOID:1749!8.94e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:299;2.95e-11;25!DOID:1749;7.80e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.27e-12,106;DOID:299,3.14e-11,25;DOID:1749,7.60e-10,14;DOID:0050687,6.56e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.75e-23!169;UBERON:0000925!5.75e-23!169;UBERON:0006595!5.75e-23!169;UBERON:0001007!9.34e-17!155;UBERON:0001555!9.34e-17!155;UBERON:0007026!9.34e-17!155;UBERON:0000064!2.46e-16!219;UBERON:0004921!2.74e-15!129;UBERON:0004185!2.74e-15!129;UBERON:0000077!5.65e-15!130;UBERON:0000062!2.46e-14!511;UBERON:0000481!4.93e-13!347;UBERON:0000153!2.64e-12!129;UBERON:0007811!2.64e-12!129;UBERON:0000033!5.04e-12!123;UBERON:0001004!7.31e-12!72;UBERON:0007023!9.51e-12!115;UBERON:0004121!1.23e-11!169;UBERON:0000464!1.78e-11!104;UBERON:0001041!3.29e-11!98;UBERON:0000924!6.34e-11!173;UBERON:0006601!6.34e-11!173;UBERON:0000922!1.09e-09!612;UBERON:0000466!2.12e-09!126;UBERON:0001048!2.23e-09!168;UBERON:0000468!2.47e-09!659;UBERON:0000475!4.22e-09!365;UBERON:0003075!4.28e-09!86;UBERON:0007284!4.28e-09!86;UBERON:0002050!7.69e-09!605;UBERON:0005423!7.69e-09!605;UBERON:0000923!1.31e-08!604;UBERON:0005291!1.31e-08!604;UBERON:0006598!1.31e-08!604;UBERON:0002532!1.31e-08!604;UBERON:0000065!1.81e-08!53;UBERON:0005177!2.31e-08!107;UBERON:0000467!2.53e-08!625;UBERON:0000063!2.83e-08!97;UBERON:0002346!3.38e-08!90;UBERON:0000480!3.46e-08!626;UBERON:0005409!4.27e-08!35;UBERON:0000161!5.07e-08!35;UBERON:0005153!7.10e-08!37;UBERON:0000477!1.09e-07!286;UBERON:0005911!1.11e-07!82;UBERON:0000119!1.33e-07!312;UBERON:0005157!1.44e-07!51;UBERON:0002075!2.80e-07!18;UBERON:0000483!2.93e-07!309;UBERON:0001049!6.38e-07!57;UBERON:0005068!6.38e-07!57;UBERON:0006241!6.38e-07!57;UBERON:0007135!6.38e-07!57;UBERON:0004111!9.03e-07!241 | |ontology_enrichment_uberon=UBERON:0004119!5.75e-23!169;UBERON:0000925!5.75e-23!169;UBERON:0006595!5.75e-23!169;UBERON:0001007!9.34e-17!155;UBERON:0001555!9.34e-17!155;UBERON:0007026!9.34e-17!155;UBERON:0000064!2.46e-16!219;UBERON:0004921!2.74e-15!129;UBERON:0004185!2.74e-15!129;UBERON:0000077!5.65e-15!130;UBERON:0000062!2.46e-14!511;UBERON:0000481!4.93e-13!347;UBERON:0000153!2.64e-12!129;UBERON:0007811!2.64e-12!129;UBERON:0000033!5.04e-12!123;UBERON:0001004!7.31e-12!72;UBERON:0007023!9.51e-12!115;UBERON:0004121!1.23e-11!169;UBERON:0000464!1.78e-11!104;UBERON:0001041!3.29e-11!98;UBERON:0000924!6.34e-11!173;UBERON:0006601!6.34e-11!173;UBERON:0000922!1.09e-09!612;UBERON:0000466!2.12e-09!126;UBERON:0001048!2.23e-09!168;UBERON:0000468!2.47e-09!659;UBERON:0000475!4.22e-09!365;UBERON:0003075!4.28e-09!86;UBERON:0007284!4.28e-09!86;UBERON:0002050!7.69e-09!605;UBERON:0005423!7.69e-09!605;UBERON:0000923!1.31e-08!604;UBERON:0005291!1.31e-08!604;UBERON:0006598!1.31e-08!604;UBERON:0002532!1.31e-08!604;UBERON:0000065!1.81e-08!53;UBERON:0005177!2.31e-08!107;UBERON:0000467!2.53e-08!625;UBERON:0000063!2.83e-08!97;UBERON:0002346!3.38e-08!90;UBERON:0000480!3.46e-08!626;UBERON:0005409!4.27e-08!35;UBERON:0000161!5.07e-08!35;UBERON:0005153!7.10e-08!37;UBERON:0000477!1.09e-07!286;UBERON:0005911!1.11e-07!82;UBERON:0000119!1.33e-07!312;UBERON:0005157!1.44e-07!51;UBERON:0002075!2.80e-07!18;UBERON:0000483!2.93e-07!309;UBERON:0001049!6.38e-07!57;UBERON:0005068!6.38e-07!57;UBERON:0006241!6.38e-07!57;UBERON:0007135!6.38e-07!57;UBERON:0004111!9.03e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;3.58e-09;33!UBERON:0002075;2.64e-08;18!UBERON:0001041;1.15e-07;14!UBERON:0000161;1.16e-07;19!UBERON:0000166;1.16e-07;19!UBERON:0005911;2.86e-07;36!UBERON:0005910;4.63e-07;6!UBERON:0001264;9.45e-07;10 | |||
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| ||
|short_description=p2@ITGB4 | |short_description=p2@ITGB4 | ||
}} | }} |
Latest revision as of 11:58, 17 September 2015
Short description: | p2@ITGB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITGB4_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 15bp_to_ENST00000200181, ENST00000339591, NM_000213, NM_001005731, uc002jpg.2, uc002jph.2_5end |
EntrezGene: | ITGB4 |
HGNC: | 6158 |
UniProt: | P16144A0AVL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.76e-33 | 253 |
endo-epithelial cell | 3.57e-25 | 42 |
endodermal cell | 8.17e-19 | 58 |
epithelial cell of alimentary canal | 3.88e-13 | 20 |
respiratory epithelial cell | 1.02e-10 | 13 |
squamous epithelial cell | 4.20e-08 | 63 |
epithelial cell of tracheobronchial tree | 4.72e-07 | 9 |
epithelial cell of lower respiratory tract | 4.72e-07 | 9 |
general ecto-epithelial cell | 7.45e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.57e-18 | 160 |
endoderm | 1.57e-18 | 160 |
presumptive endoderm | 1.57e-18 | 160 |
digestive system | 2.74e-12 | 145 |
digestive tract | 2.74e-12 | 145 |
primitive gut | 2.74e-12 | 145 |
anterior region of body | 7.33e-11 | 62 |
craniocervical region | 7.33e-11 | 62 |
subdivision of digestive tract | 1.01e-10 | 118 |
head | 1.83e-10 | 56 |
orifice | 2.05e-10 | 36 |
respiratory system | 2.54e-10 | 74 |
subdivision of head | 8.24e-09 | 49 |
organ system subdivision | 9.09e-09 | 223 |
viscus | 2.78e-08 | 18 |
extraembryonic membrane | 2.78e-08 | 14 |
membranous layer | 2.78e-08 | 14 |
epithelial bud | 2.88e-08 | 37 |
ectoderm-derived structure | 5.87e-08 | 171 |
ectoderm | 5.87e-08 | 171 |
presumptive ectoderm | 5.87e-08 | 171 |
oral opening | 7.43e-08 | 22 |
endo-epithelium | 1.42e-07 | 82 |
renal system | 3.08e-07 | 48 |
epithelial fold | 3.12e-07 | 47 |
ecto-epithelium | 3.74e-07 | 104 |
transitional epithelium | 4.65e-07 | 6 |
urinary system structure | 5.53e-07 | 47 |
trunk region element | 9.86e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.27e-12 | 106 |
adenocarcinoma | 3.14e-11 | 25 |
squamous cell carcinoma | 7.60e-10 | 14 |
cell type cancer | 6.56e-07 | 143 |