FFCP PHASE1:Hg19::chr20:61298923..61298943,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=28231 | |EntrezGene=28231 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10953 | |HGNC=10953 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=93bp_to_ENST00000495889_5end | |association_with_transcript=93bp_to_ENST00000495889_5end | ||
|cluster_id=chr20:61298923..61298943,+ | |||
|coexpression_cluster_id=C1872 | |||
|description=CAGE_peak_3_at_SLCO4A1_5end | |description=CAGE_peak_3_at_SLCO4A1_5end | ||
|id=chr20:61298923..61298943,+ | |id=chr20:61298923..61298943,+ | ||
|ontology_enrichment_celltype=CL:0000148!1.50e-22!10;CL:0000541!1.50e-22!10;CL:0000147!8.20e-16!14;CL:0002567!4.66e-15!3;CL:0000710!9.39e-11!20;CL:0000075!1.07e-07!27;CL:0002178!2.67e-07!3 | |ontology_enrichment_celltype=CL:0000148!1.50e-22!10;CL:0000541!1.50e-22!10;CL:0000147!8.20e-16!14;CL:0002567!4.66e-15!3;CL:0000710!9.39e-11!20;CL:0000075!1.07e-07!27;CL:0002178!2.67e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.02e-64;10!CL:0000147;3.76e-46;14!CL:0002567;7.60e-41;3!CL:0000710;3.31e-32;20!CL:0000075;9.38e-24;27!CL:0002178;7.59e-19;3!CL:0002077;1.26e-16;34!CL:0002566;5.42e-15;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,9.77e-65,10;CL:0000541,9.77e-65,10;CL:0000147,3.63e-46,14;CL:0002567,7.60e-41,3;CL:0000710,3.23e-32,20;CL:0000075,9.22e-24,27;CL:0002178,7.94e-19,3;CL:0002077,8.89e-19,34;CL:0002566,5.42e-15,1;CL:0000333,9.59e-15,41;CL:0000133,3.11e-10,59;CL:0000221,2.47e-08,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3493!3.83e-10!2 | |ontology_enrichment_disease=DOID:3493!3.83e-10!2 | ||
|ontology_enrichment_disease_v019=DOID:3493;3.56e-08;2!DOID:1909;7.78e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,3.56e-08,2;DOID:1909,8.04e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001041!1.57e-10!98;UBERON:0000341!1.12e-09!2;UBERON:0003127!1.66e-09!2;UBERON:0002114!1.58e-08!12;UBERON:0000077!5.82e-08!130;UBERON:0001007!1.27e-07!155;UBERON:0001555!1.27e-07!155;UBERON:0007026!1.27e-07!155;UBERON:0001264!1.70e-07!10;UBERON:0003922!1.70e-07!10;UBERON:0003923!1.70e-07!10;UBERON:0003924!1.70e-07!10;UBERON:0003921!1.70e-07!10;UBERON:0002108!2.40e-07!14;UBERON:0004921!5.64e-07!129;UBERON:0004185!5.64e-07!129;UBERON:0001045!8.16e-07!11 | |ontology_enrichment_uberon=UBERON:0001041!1.57e-10!98;UBERON:0000341!1.12e-09!2;UBERON:0003127!1.66e-09!2;UBERON:0002114!1.58e-08!12;UBERON:0000077!5.82e-08!130;UBERON:0001007!1.27e-07!155;UBERON:0001555!1.27e-07!155;UBERON:0007026!1.27e-07!155;UBERON:0001264!1.70e-07!10;UBERON:0003922!1.70e-07!10;UBERON:0003923!1.70e-07!10;UBERON:0003924!1.70e-07!10;UBERON:0003921!1.70e-07!10;UBERON:0002108!2.40e-07!14;UBERON:0004921!5.64e-07!129;UBERON:0004185!5.64e-07!129;UBERON:0001045!8.16e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001264;2.13e-12;10!UBERON:0000945;1.06e-11;5!UBERON:0010039;1.06e-11;5!UBERON:0002075;3.94e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001264,2.13e-12,10;UBERON:0000945,1.23e-07,8;UBERON:0010039,1.23e-07,8;UBERON:0002075,3.94e-07,18 | |||
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| ||
|short_description=p3@SLCO4A1 | |short_description=p3@SLCO4A1 | ||
}} | }} |
Latest revision as of 11:20, 17 September 2015
Short description: | p3@SLCO4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLCO4A1_5end |
Coexpression cluster: | C1872_signet_Melanocyte_large_parotid_submaxillary_salivary_retina |
Association with transcript: | 93bp_to_ENST00000495889_5end |
EntrezGene: | SLCO4A1 |
HGNC: | 10953 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 9.77e-65 | 10 |
melanoblast | 9.77e-65 | 10 |
pigment cell | 3.63e-46 | 14 |
light melanocyte | 7.60e-41 | 3 |
neurecto-epithelial cell | 3.23e-32 | 20 |
columnar/cuboidal epithelial cell | 9.22e-24 | 27 |
epithelial cell of stomach | 7.94e-19 | 3 |
ecto-epithelial cell | 8.89e-19 | 34 |
dark melanocyte | 5.42e-15 | 1 |
migratory neural crest cell | 9.59e-15 | 41 |
neurectodermal cell | 3.11e-10 | 59 |
ectodermal cell | 2.47e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
pancreas | 2.13e-12 | 10 |
stomach | 1.23e-07 | 8 |
food storage organ | 1.23e-07 | 8 |
viscus | 3.94e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 3.56e-08 | 2 |
melanoma | 8.04e-08 | 2 |