FFCP PHASE1:Hg19::chr19:3574157..3574180,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10362 | |EntrezGene=10362 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5002 | |HGNC=5002 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-110bp_to_ENST00000486028_5end | |association_with_transcript=-110bp_to_ENST00000486028_5end | ||
|cluster_id=chr19:3574157..3574180,+ | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_4_at_HMG20B_5end | |description=CAGE_peak_4_at_HMG20B_5end | ||
|id=chr19:3574157..3574180,+ | |id=chr19:3574157..3574180,+ | ||
|ontology_enrichment_celltype=CL:0000148!5.69e-12!10;CL:0000541!5.69e-12!10;CL:0000990!2.50e-09!8;CL:0000147!1.56e-07!14;CL:0000451!3.94e-07!10;CL:0000453!7.70e-07!5 | |ontology_enrichment_celltype=CL:0000148!5.69e-12!10;CL:0000541!5.69e-12!10;CL:0000990!2.50e-09!8;CL:0000147!1.56e-07!14;CL:0000451!3.94e-07!10;CL:0000453!7.70e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.07e-40;10!CL:0000147;9.47e-29;14!CL:0000453;8.98e-21;5!CL:0002567;1.08e-20;3!CL:0000710;8.91e-20;20!CL:0000075;2.43e-14;27!CL:0000990;1.29e-11;8!CL:0002077;3.06e-10;34!CL:0000451;1.59e-09;10!CL:0002566;5.22e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.35e-40,10;CL:0000541,1.35e-40,10;CL:0000147,1.12e-28,14;CL:0000453,1.05e-20,5;CL:0002567,1.11e-20,3;CL:0000710,9.98e-20,20;CL:0000075,2.64e-14,27;CL:0000990,1.40e-11,8;CL:0002077,4.11e-11,34;CL:0000451,1.70e-09,10;CL:0000333,1.55e-08,41;CL:0002566,5.22e-08,1;CL:0000066,9.39e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.97e-16;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;1.35e-13;2!DOID:5093;3.77e-07;4!DOID:1612;3.77e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.54e-13,2;DOID:305,2.22e-07,106;DOID:5093,3.28e-07,4;DOID:1612,3.28e-07,4;DOID:0050687,8.89e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!5.16e-11!9;UBERON:0001557!7.88e-09!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.98e-54;9!UBERON:0001557;2.98e-54;9!UBERON:0000072;2.37e-13;37!UBERON:0000065;2.20e-11;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.46e-54,9;UBERON:0001557,3.95e-25,19;UBERON:0008947,1.14e-14,38;UBERON:0003258,1.14e-14,38;UBERON:0000072,1.56e-11,47;UBERON:0000065,8.12e-10,54 | |||
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| ||
|short_description=p4@HMG20B | |short_description=p4@HMG20B | ||
}} | }} |
Latest revision as of 11:01, 17 September 2015
Short description: | p4@HMG20B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HMG20B_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | -110bp_to_ENST00000486028_5end |
EntrezGene: | HMG20B |
HGNC: | 5002 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.35e-40 | 10 |
melanoblast | 1.35e-40 | 10 |
pigment cell | 1.12e-28 | 14 |
Langerhans cell | 1.05e-20 | 5 |
light melanocyte | 1.11e-20 | 3 |
neurecto-epithelial cell | 9.98e-20 | 20 |
columnar/cuboidal epithelial cell | 2.64e-14 | 27 |
conventional dendritic cell | 1.40e-11 | 8 |
ecto-epithelial cell | 4.11e-11 | 34 |
dendritic cell | 1.70e-09 | 10 |
migratory neural crest cell | 1.55e-08 | 41 |
dark melanocyte | 5.22e-08 | 1 |
epithelial cell | 9.39e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.46e-54 | 9 |
upper respiratory tract | 3.95e-25 | 19 |
respiratory primordium | 1.14e-14 | 38 |
endoderm of foregut | 1.14e-14 | 38 |
segment of respiratory tract | 1.56e-11 | 47 |
respiratory tract | 8.12e-10 | 54 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.54e-13 | 2 |
carcinoma | 2.22e-07 | 106 |
thoracic cancer | 3.28e-07 | 4 |
breast cancer | 3.28e-07 | 4 |
cell type cancer | 8.89e-07 | 143 |