FFCP PHASE1:Hg19::chr15:39880777..39880827,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:39880777..39880827,+ to FFCP PHASE1:Hg19::chr15:39880777..39880827,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7057 | |EntrezGene=7057 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11785 | |HGNC=11785 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010bbi.2_5end | |||
|cluster_id=chr15:39880777..39880827,+ | |||
|coexpression_cluster_id=C142 | |||
|description=CAGE_peak_3_at_THBS1_5end | |||
|id=chr15:39880777..39880827,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.66e-18!180;CL:0000057!9.16e-17!75;CL:0002371!2.14e-16!591;CL:0000222!3.34e-14!119;CL:0000144!1.90e-13!625;CL:0000220!5.68e-13!246;CL:0000548!8.82e-13!679;CL:0000004!8.82e-13!679;CL:0000255!8.82e-13!679;CL:0002321!1.48e-12!248;CL:0000012!5.04e-12!682;CL:0002139!1.13e-11!24;CL:0000115!3.15e-11!35;CL:0002078!6.57e-10!44;CL:0000071!3.60e-09!18;CL:0002546!3.60e-09!18;CL:0000213!1.31e-08!57;CL:0000215!1.31e-08!57;CL:0002620!1.26e-07!23;CL:0002334!2.07e-07!12;CL:0000063!4.43e-07!578;CL:0000192!6.45e-07!42;CL:0000514!6.45e-07!42;CL:0000359!8.87e-07!32;CL:0000680!9.85e-07!57;CL:0000056!9.85e-07!57;CL:0000355!9.85e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.70e-13;24!CL:0000115;7.97e-11;36!CL:0000071;2.86e-10;18!CL:0002334;2.55e-08;12!CL:0002078;1.24e-07;45!CL:0000349;3.66e-07;19!CL:0002620;9.92e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.55e-16,76;CL:0002139,3.70e-13,24;CL:0000115,8.84e-13,36;CL:0000222,1.28e-12,121;CL:0002078,5.71e-11,45;CL:0002321,1.87e-10,250;CL:0000071,2.75e-10,18;CL:0002546,2.75e-10,18;CL:0000213,7.89e-09,58;CL:0000215,7.89e-09,58;CL:0002334,2.85e-08,12;CL:0000349,3.87e-07,19;CL:0000723,4.76e-07,433;CL:0000048,9.64e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002546;2.86e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!3.54e-18!69;UBERON:0002049!7.86e-18!79;UBERON:0007798!7.86e-18!79;UBERON:0004872!1.34e-17!84;UBERON:0000468!1.70e-17!659;UBERON:0001981!7.57e-17!60;UBERON:0007500!7.57e-17!60;UBERON:0004537!7.57e-17!60;UBERON:0006965!7.57e-17!60;UBERON:0000467!5.46e-16!625;UBERON:0000480!6.58e-16!626;UBERON:0003914!1.59e-14!118;UBERON:0001009!3.97e-14!113;UBERON:0004535!4.38e-14!110;UBERON:0003102!1.13e-12!95;UBERON:0001637!1.96e-12!42;UBERON:0003509!1.96e-12!42;UBERON:0004572!1.96e-12!42;UBERON:0000926!9.02e-11!448;UBERON:0004120!9.02e-11!448;UBERON:0006603!9.02e-11!448;UBERON:0000490!1.51e-10!138;UBERON:0002199!1.51e-09!45;UBERON:0002416!1.51e-09!45;UBERON:0000487!3.34e-09!22;UBERON:0004573!3.37e-09!33;UBERON:0004571!3.37e-09!33;UBERON:0001986!3.60e-09!18;UBERON:0004638!3.60e-09!18;UBERON:0004852!3.60e-09!18;UBERON:0006914!9.04e-09!25;UBERON:0002100!2.53e-08!216;UBERON:0005256!2.73e-08!143;UBERON:0002097!2.94e-08!40;UBERON:0003081!8.36e-08!216;UBERON:0004923!8.65e-08!57;UBERON:0000486!1.11e-07!82;UBERON:0000914!1.24e-07!83;UBERON:0002329!1.24e-07!83;UBERON:0003077!1.24e-07!83;UBERON:0003059!1.24e-07!83;UBERON:0007282!1.24e-07!83;UBERON:0009618!1.24e-07!83;UBERON:0007285!1.24e-07!83;UBERON:0000923!1.57e-07!604;UBERON:0005291!1.57e-07!604;UBERON:0006598!1.57e-07!604;UBERON:0002532!1.57e-07!604;UBERON:0002050!2.39e-07!605;UBERON:0005423!2.39e-07!605;UBERON:0000922!8.49e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.86e-10;18!UBERON:0001986;2.86e-10;18!UBERON:0004852;2.86e-10;18!UBERON:0001637;5.25e-10;42!UBERON:0003509;5.25e-10;42!UBERON:0004572;5.25e-10;42!UBERON:0000487;6.11e-10;22!UBERON:0006914;1.07e-09;25!UBERON:0007500;2.05e-09;56!UBERON:0001981;2.05e-09;56!UBERON:0004537;2.05e-09;56!UBERON:0000055;2.82e-09;65!UBERON:0004573;2.67e-08;33!UBERON:0004571;2.67e-08;33!UBERON:0002097;8.99e-07;41 | |||
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|phase1_expression=63.4057543654243,222.23634379884,40.5948683796397,93.0681674684113,39.7795374040286,76.7657901208324,17.7309914717817,4.42203911398782,0.783556884599516,6.14334841253772,9.07141518364156,11.358951350769,13.7158828678796,1.23766352960047,2.31978163009541,30.2546315903299,40.3805333776065,24.8305430731707,18.0535135552488,0.61560529038394,3.87601313364081,2.5076377718247,0.286235987131057,3.14811177667634,3.13856598987007,0,0,0,0.786728553697808,0.383829398097213,1.08371286321253,0,5.4217065380085,1.84877005083394,0,0,0,0.553995408531877,7.82123345133553,0.651032612147555,0,0,0.257575567634187,8.43309784921475,0.377875943688809,0,27.6590553917765,3.28934310417461,1.85823822537062,35.3861642556245,3.33008918487831,2.36482229888585,12.7555901872549,1.29096936716765,0,20.1419303310587,4.63940455098338,1.12361742222542,41.9334932548137,2.56743221660875,4.47535988059329,15.1731598085889,1.99463657621632,2.13112375266347,54.8495461008024,4.53908179752912,3.73693349397345,25.8786125214446,3.12889751052121,1.3031330682307,55.6967542422699,2.57794345191295,1.58231193720442,0,0.637812899895131,0,0.44931452458598,1.35159203557356,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,5.37022759742827,1.80719576192283,13.536123587169,12.1671075927092,3.9764297352555,11.6792368872633,0.378139268656271,2.4390233720882,0.790513071238134,0.458426764241994,1.82147644146271,4.07862887062872,0,0,0,0,0,0,7.9504962946682,7.74211135595512,21.5227110996708,17.5245461996443,20.9749718104953,60.2508511848748,29.2592953151535,8.26933629341852,5.69226020298736,19.0790749275862,16.516002001475,15.9657142200888,26.3587022152023,22.7951109814439,130.432853608963,13.394959242612,7.85852804191594,11.5989824897822,16.8648301212472,9.49265659568129,13.0073238190589,0,0,4.36094052142534,81.0064281263369,26.212515914568,17.4780118673449,25.5284592466444,8.15737279056221,7.28880880184999,10.6748995729705,62.4068897495415,1.8672662123986,2.96363478553314,10.6250237023748,0.908144565869588,1.72852777344,0,0.936480230490962,0.570471821544449,3.13842229158782,0.352303495931295,0.647491777472526,0.421352420106746,1.83738754129404,3.93069815397658,4.02970546585485,26.1360628602052,94.2087000551302,0,2.15585442544872,0.673344455816265,1.12606667884768,0.831192346452549,17.1201272143527,63.136485934598,36.8083244321162,5.78504134116107,136.515512759224,40.5759038755278,33.6971722843703,38.7117513948879,32.4615467101083,60.0302458306316,29.4064633003912,26.4978841618788,29.7182865741656,39.3796687820819,25.6819217212015,22.4688018978149,76.6820719835887,17.8331213862923,13.0561656079075,3.28543450377605,7.0913991353617,4.87567812161307,0.243947412259191,0,0.232387885739037,0.310983165046111,0,0,37.5478877591558,160.810234548221,16.5761905622977,47.8298965872938,18.0469870417396,1.65629520055781,2.36018566109342,2.16909926895134,2.86764329104224,3.05031221729369,2.84724742933316,1.75280700608214,0.98110732562673,2.69323009862473,9.59602091012043,11.2193419042757,1.2347220339942,2.94017422771084,1.26755034821831,0,0,0,0.245976877086227,1.02940686179115,11.7432805387229,1.1240175325762,8.04231779293047,6.20342582562148,0.651616610620649,3.11980435583874,8.6598805215164,0,0.587043471179108,19.2007375522228,31.0200293426329,39.0021012080926,2.37061319387782,1.71697232418975,0,0,0,2.81201501960331,25.5332834862267,6.52165447314978,6.35865511190223,7.84711633987697,14.1851591291128,0,0.088048434013226,0,0.144119953416961,0,0.253991577168676,0,0,3.4214489204541,4.8328921570562,0,0,0.112131084345361,1.30788020649984,0.4400297149257,4.00742318849111,0,0,16.7541013448468,33.2823798116371,1.28603687131071,0,0.799266537048298,3.14551586047925,1.08524321078289,4.93944202068461,0.977208552881205,1.06617584622764,0,0,0.871533458600294,0.099972991182057,0,0,0,12.9397421965455,6.89171615004683,1.42636905040718,4.92256442669769,6.57524232161227,3.9393411912777,0,0.197030760201927,0,0,0,0,1.54657762555539,0.502548796003046,2.55175500661265,0.749007023947182,2.99161459204025,0,2.33113834266366,3.50119364741774,0.271265023699736,59.27169553628,143.635335981715,77.1164809515941,55.9935963665169,5.41702979509894,15.9185252839189,5.17365356462525,2.65690239414175,4.79359838208428,15.2915161463826,0.195801157462741,2.05886054286514,0.206768026122887,0.647142602455851,0.426910231213777,4.54691357169389,11.6504807657348,18.4458078931105,58.5534426452313,107.269919328356,185.796982514695,31.3940915676467,69.5921858730717,76.7273203855008,20.7785293022987,32.8466647799656,18.2888577072521,2.21743321237285,16.0968873046923,7.43746422143739,0.241718899183244,45.1139558182391,2.4861867012692,4.13332013392584,5.46273504020151,11.0144508565916,0,0.0770153371044148,0,0,0.422206515571503,9.09867072567173,13.6074964221213,12.7390390500262,80.1981713989504,0.812839312631559,0.501689773854853,1.27438136522519,0.831076008928724,1.56712328305525,0.219259876645935,0,0.256450125116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| ||
|short_description=p3@THBS1 | |||
}} | }} |
Latest revision as of 10:49, 17 September 2015
Short description: | p3@THBS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_THBS1_5end |
Coexpression cluster: | C142_Preadipocyte_Fibroblast_hepatic_Ewing_Adipocyte_Olfactory_Hair |
Association with transcript: | 0bp_to_uc010bbi.2_5end |
EntrezGene: | THBS1 |
HGNC: | 11785 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.55e-16 | 76 |
endothelial cell of vascular tree | 3.70e-13 | 24 |
endothelial cell | 8.84e-13 | 36 |
mesodermal cell | 1.28e-12 | 121 |
meso-epithelial cell | 5.71e-11 | 45 |
embryonic cell | 1.87e-10 | 250 |
blood vessel endothelial cell | 2.75e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.75e-10 | 18 |
lining cell | 7.89e-09 | 58 |
barrier cell | 7.89e-09 | 58 |
preadipocyte | 2.85e-08 | 12 |
extraembryonic cell | 3.87e-07 | 19 |
somatic stem cell | 4.76e-07 | 433 |
multi fate stem cell | 9.64e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.34e-17 | 68 |
splanchnic layer of lateral plate mesoderm | 8.43e-17 | 83 |
vasculature | 4.24e-16 | 78 |
vascular system | 4.24e-16 | 78 |
epithelial tube open at both ends | 5.10e-16 | 59 |
blood vessel | 5.10e-16 | 59 |
blood vasculature | 5.10e-16 | 59 |
vascular cord | 5.10e-16 | 59 |
epithelial tube | 1.50e-12 | 117 |
artery | 3.80e-12 | 42 |
arterial blood vessel | 3.80e-12 | 42 |
arterial system | 3.80e-12 | 42 |
cardiovascular system | 1.65e-11 | 109 |
circulatory system | 2.12e-11 | 112 |
surface structure | 2.62e-11 | 99 |
blood vessel endothelium | 2.75e-10 | 18 |
endothelium | 2.75e-10 | 18 |
cardiovascular system endothelium | 2.75e-10 | 18 |
mesoderm | 4.23e-10 | 315 |
mesoderm-derived structure | 4.23e-10 | 315 |
presumptive mesoderm | 4.23e-10 | 315 |
simple squamous epithelium | 5.07e-10 | 22 |
squamous epithelium | 9.01e-10 | 25 |
lateral plate mesoderm | 1.82e-09 | 203 |
integument | 3.99e-09 | 46 |
integumental system | 3.99e-09 | 46 |
systemic artery | 1.45e-08 | 33 |
systemic arterial system | 1.45e-08 | 33 |
unilaminar epithelium | 2.80e-08 | 148 |
organ component layer | 4.28e-08 | 66 |
skin of body | 4.66e-08 | 41 |
extraembryonic membrane | 7.59e-07 | 14 |
membranous layer | 7.59e-07 | 14 |