FFCP PHASE1:Hg19::chr19:3572925..3573014,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10362 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5002 | |||
|TSSclassifier=strong | |||
|UniProt=B5MDG7,Q9P0W2,F6USE8,C9K049,F8WES5,C9JQA7 | |||
|association_with_transcript=0bp_to_ENST00000262949,ENST00000333651,ENST00000402569,ENST00000417382,ENST00000435022,ENST00000453933,ENST00000488973,NM_006339,uc002lya.2,uc002lyb.2,uc010dtm.1_5end | |||
|cluster_id=chr19:3572925..3573014,+ | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_1_at_HMG20B_5end | |||
|id=chr19:3572925..3573014,+ | |||
|ontology_enrichment_celltype=CL:0000012!2.24e-22!682;CL:0000548!6.34e-22!679;CL:0000004!6.34e-22!679;CL:0000255!6.34e-22!679;CL:0002371!4.88e-19!591;CL:0000144!7.00e-18!625;CL:0000003!1.28e-13!722;CL:0000055!8.98e-10!180;CL:0000063!1.28e-09!578;CL:0002321!3.27e-07!248;CL:0000220!6.96e-07!246 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.54e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!7.42e-08!448;UBERON:0004120!7.42e-08!448;UBERON:0006603!7.42e-08!448;UBERON:0002049!4.48e-07!79;UBERON:0007798!4.48e-07!79 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,3.41e-07,78;UBERON:0007798,3.41e-07,78;UBERON:0004872,8.76e-07,83 | |||
|phase1_expression=23.0731541673607,25.906163390809,19.451707765244,38.0278533741896,26.8176656656373,23.55314015071,43.0609792886128,32.2177135447684,38.3942873453763,28.7508705706765,87.2251459965534,31.4555575867448,45.367920255294,40.3478310649752,55.3433617465619,40.3395087871065,43.3940060177263,29.9427137058823,36.594959909288,52.6958128568652,62.0162101382529,47.3316629431913,33.2033745072026,30.5229967912532,36.7839934012772,23.0768485358813,22.8239638670849,23.2196804875354,29.1089564868189,17.2723229143746,32.8210181430081,56.0846946932146,51.5062121110808,30.3198288336766,30.9868802321207,35.1158004243931,28.772843054815,32.6857291033808,31.2849338053421,30.1645110295034,20.3763081558331,15.223002302892,21.1211965460033,19.9195587128004,25.695564170839,18.436388650274,19.9888971738889,23.8477375052659,22.9182714462377,17.5492359316512,23.5667850006773,15.6078271726466,19.9952494827239,22.5919639254339,25.7310324529249,21.6478690473995,22.1053981546855,17.3037083022715,20.8137046812214,25.3533931390114,23.0161365287655,16.8224163095225,26.528666463677,24.7210355308963,27.5698776697155,23.2627942123367,30.5182902007832,24.8736178604176,27.6385946762707,23.8907729175628,18.1619850790011,27.2525450630798,19.6206680213348,21.9705497764419,21.8982428963995,20.9658645508376,23.364355278471,27.4823713899957,25.3946426981387,23.3710449867824,28.644001516669,18.8144078377573,14.0796995569058,12.561188059029,23.1272406004524,17.9226693477933,15.2150475073685,18.9668305184979,13.2208974556972,17.1729675816366,11.384259382189,19.9660644386119,13.7618362125082,26.4342657158052,22.4203425192614,38.9808445467114,18.0972988504726,18.0784950864616,20.3545484009514,24.5764148224297,15.3183465317787,11.3627473376336,9.74133642039557,20.2767031531016,14.435689466267,15.0643048316862,17.060643417196,17.2923281629661,15.997299749865,16.772666269575,21.0026013517245,17.0983820583681,15.8666622583405,14.1796638887548,26.1338809512442,21.41546576984,18.3945836928922,21.3049016199231,15.1811815211702,17.5210977878253,14.9749194386976,23.7613011112094,21.5322420281215,19.1979916731628,11.2437653897111,19.8892891716974,20.5281999230262,16.3301462012033,18.453373509062,14.7720891960455,21.9426179682566,38.2299490031073,29.2805266621684,26.3850581240733,24.5655576211586,24.62390822334,18.2915767821753,30.6579968290661,33.7489297275722,32.8159508244595,33.2015489920016,25.999346486296,54.6442932438813,41.8986420346405,65.558573518246,51.3682725032838,56.1082593389611,21.7026468117861,11.4398982156026,21.5445350771148,29.8143611050058,32.6889146140327,38.8797361800506,20.3510859092643,39.4329470037312,33.2892830747482,36.365124177405,27.6505932311182,24.547872125383,23.7651635062916,47.9366887359885,27.3697958058665,52.4733423728564,32.7220141507823,43.747665185615,24.7360247346901,38.394522719075,32.6573293401634,30.6633274931766,31.3257667657483,34.8083313467774,31.6273001846552,19.3890132074163,62.7975435085249,18.8849341644221,20.6407734013265,33.2347043841179,33.84672124836,31.2108176334554,26.3518472066884,39.4971284199908,42.4268183277515,27.6977821505792,27.6156877742861,29.586604463536,31.3309875225008,29.9611480729599,41.0062505709144,32.7768080671837,35.9397247573003,35.4193372907769,30.5329696473789,25.2521793214285,24.4384403661912,31.4397423732536,34.8849461165421,31.5143632586085,17.8200428592308,27.4466291499198,48.2385521827154,71.8618141816238,31.9838616512726,36.4094892827416,26.8752192019657,38.1910530166329,31.874730763098,24.7892797195885,28.1311814236852,32.8283033310617,23.9184275476796,16.7426201916054,36.6111137222971,25.5570272511328,31.1745053455211,25.6841261737594,36.2869114318722,26.8926134244908,20.6995694880174,19.3304787148829,28.4497060001109,36.5659880292113,29.3188605842433,32.7251943159241,19.519346169493,21.2741974060851,24.0915860126763,35.7382958959714,40.8191686430175,38.111613261202,38.6655735207332,33.0540314647073,33.2129396759005,32.8544017892614,51.4592750554308,34.5337303381201,35.7563304584624,28.8751792667834,50.6353104170532,45.6864510111656,47.479172887046,52.3896370478871,51.8553076939927,51.487724347108,55.8201615783081,51.9986882582167,48.4781417752452,42.8130163682296,60.3039627354817,50.6236033937622,69.0940943512047,34.2238594018943,18.6737171168749,26.5855458006632,35.317047953172,11.6839016615958,32.0831805258243,29.1935759186944,34.8445435098621,18.3968019513284,30.6467753474733,37.142146805377,50.9568044786993,18.7630744632855,39.0685464766009,25.4776866491733,23.6760974328161,26.3901742168668,23.0207524203864,45.0416506836787,41.2073357805539,27.0838706696137,64.8191814435688,39.6845203310904,19.6841051372232,21.8376766658517,25.661292600872,19.2550823811124,21.2162775115192,45.6225388206601,16.2578868505661,24.5655130896901,9.12243708379397,5.90891809009542,7.70078843900918,172.396783003239,310.938578404438,275.46100094361,188.179690624976,230.025101177335,92.8060048737705,149.773050698423,37.6760443400412,39.2364061949952,21.4881177455384,22.8810936891267,225.3235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| |||
|short_description=p1@HMG20B | |||
}} |
Latest revision as of 10:49, 17 September 2015
Short description: | p1@HMG20B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMG20B_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 0bp_to_ENST00000262949, ENST00000333651, ENST00000402569, ENST00000417382, ENST00000435022, ENST00000453933, ENST00000488973, NM_006339, uc002lya.2, uc002lyb.2, uc010dtm.1_5end |
EntrezGene: | HMG20B |
HGNC: | 5002 |
UniProt: | B5MDG7Q9P0W2F6USE8C9K049F8WES5C9JQA7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.54e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
vasculature | 3.41e-07 | 78 |
vascular system | 3.41e-07 | 78 |
splanchnic layer of lateral plate mesoderm | 8.76e-07 | 83 |