FFCP PHASE1:Hg19::chr19:3572925..3573014,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:3572925..3573014,+
|short_description=p1@HMG20B
|description=CAGE_peak_1_at_HMG20B_5end
|association_with_transcript=0bp_to_ENST00000262949,ENST0000033365...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10362 | |EntrezGene=10362 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5002 | |HGNC=5002 | ||
|TSSclassifier=strong | |||
|UniProt=B5MDG7,Q9P0W2,F6USE8,C9K049,F8WES5,C9JQA7 | |UniProt=B5MDG7,Q9P0W2,F6USE8,C9K049,F8WES5,C9JQA7 | ||
|association_with_transcript=0bp_to_ENST00000262949,ENST00000333651,ENST00000402569,ENST00000417382,ENST00000435022,ENST00000453933,ENST00000488973,NM_006339,uc002lya.2,uc002lyb.2,uc010dtm.1_5end | |||
|cluster_id=chr19:3572925..3573014,+ | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_1_at_HMG20B_5end | |||
|id=chr19:3572925..3573014,+ | |||
|ontology_enrichment_celltype=CL:0000012!2.24e-22!682;CL:0000548!6.34e-22!679;CL:0000004!6.34e-22!679;CL:0000255!6.34e-22!679;CL:0002371!4.88e-19!591;CL:0000144!7.00e-18!625;CL:0000003!1.28e-13!722;CL:0000055!8.98e-10!180;CL:0000063!1.28e-09!578;CL:0002321!3.27e-07!248;CL:0000220!6.96e-07!246 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.54e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!7.42e-08!448;UBERON:0004120!7.42e-08!448;UBERON:0006603!7.42e-08!448;UBERON:0002049!4.48e-07!79;UBERON:0007798!4.48e-07!79 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,3.41e-07,78;UBERON:0007798,3.41e-07,78;UBERON:0004872,8.76e-07,83 | |||
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|short_description=p1@HMG20B | |||
}} | }} |
Latest revision as of 10:49, 17 September 2015
Short description: | p1@HMG20B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMG20B_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 0bp_to_ENST00000262949, ENST00000333651, ENST00000402569, ENST00000417382, ENST00000435022, ENST00000453933, ENST00000488973, NM_006339, uc002lya.2, uc002lyb.2, uc010dtm.1_5end |
EntrezGene: | HMG20B |
HGNC: | 5002 |
UniProt: | B5MDG7Q9P0W2F6USE8C9K049F8WES5C9JQA7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.54e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
vasculature | 3.41e-07 | 78 |
vascular system | 3.41e-07 | 78 |
splanchnic layer of lateral plate mesoderm | 8.76e-07 | 83 |